jgi.p|Nanoce1779_2|590546, mRNA_5850 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590546
Unique NamemRNA_5850
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1878
Alignment locationscaffold_11:728184..730061 +

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Properties
Property NameValue
TranscriptId590632
TrackFilteredModels2
ProteinId590546
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:728184..730061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590546gene_5850Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590546mRNA_5850-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5850CDS_5850Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5850 ID=mRNA_5850|Name=jgi.p|Nanoce1779_2|590546|organism=Nannochloropsis oceanica|type=mRNA|length=1878bp
CCTCCTCGGCCCCATACCCCCCCGGCGATGCCGGAGGGACAACCCATCGG
CTCCCTCCCTCTCTTCCTCCCTCCCCTCCCCTCTGCAAAAATGGATGGTG
CTTTAACAGATACCTGGCCGTCGGCCTCTTCTTCGGATCTTTATTCAAAC
ACTGCCGCACAAAATCTCGAAAAGAAGGGGAGAACGAGGGCGGGAGGGAA
GGAGAGTCCATCTCCCTCAACGCCGAGACCAGCCCCCAATACCCTCCTGA
GTGATCGTAAGGAAACCGGCCCATGGCGCATGTGACAAGCGTCAATCCCA
CGCCCCAGACGTCGGCGGAATAGCTGTACTCTTCTCCGCAGATGCGTTCT
GGCGACATGTACGTAAAAGTCCCCACAAATGTGTCCGCCTGGGAAATAGA
GGAATCCAGGTGGCGGACCAAGCCAAAGTCGCTAATTTTGACCTGCCCCT
TGTGATTGAGCAGGAGGTTGGCCGGCTTGATGTCACGATGGATCTGTCGC
CGTTCATGCAGGAAGGCCAGCCCCTCCAGGACCTCGCGGGCGATATGGGA
CAGGACGGCTTCGGCAGCACAGCCCCCGCCATCGACTATTTCTTGCAGTG
AGCCTCCATCCATGTATTCCTGGACGATGCTCACGGTCCCTTCAGTAGGG
CTGACGTACGCGTCATAAAACGATACCAATTGGGGACATCCAGCTGTCGC
CGCCGCCGCTACTGCTGCTGCTGCTGTTGCTTGTGTAGGTGGAGTCTTGC
CAACGGCAGCCGCAGCCGCGGCGGCCGCAGCAGCCGCCTCTTTACTTAAC
CCTCCTGCGAACAAATCCTCATGCTCTACTGCGGTTTTCCTCTGGGCTTT
ACCCTTCCCACTGCCTTTCCGACAATTTTTTGACGGATACCCTGTTCCTG
CTGGTGCTGCAGCGGCAGCAGCACCAGCAGGAGGAGTAGGAGTAGGCCGG
CCTAACGGAGCTAAATTTGCGTATAGAGCTCTCAGTTCTCTCACCATCTG
ATGCCGCCTTCCTTCTTCAAACACCAGAATGGTTTTCACAGCCACCAAGC
GCAGGCTGGGAACGTGGATACCTTGCCAAACAGTGCCACCTGTCCCTCGC
CCTAGCACGGCCAAGGGTGCCAACGCGTCTTGTAAACTTTGAGTGTCATT
GCTCACGCTAACGCTGGGCATGTTGCGACCACTGTCATTTGTGGAAAATG
GGGACATGGGCTCACCAGAACGGCCAGGGCCATTACTCAAGATGAAGGAG
GGGGAGGCGGCGCCATTACTGCTCTCTCCCCAGGAGCCGGAGGAGGGCGT
GGTGGAAAGCTGCCCGCCAATGCTGCTGTTGTGTTTGTAGTATATTGGCT
GGCTTGTCTGGGTCAGTCCAGACTTGCGGATCTCGAAGCCAGCGATATGG
ATGGAGCCGCTCTTGGAAATACTAAGCGTCTTGGAGTCGCTCTTGTTGCT
GGTGGCGTGTCTGCGCTTCGAGGACGAGGACATTCCGCCCGACGACCCCC
CCCCTGACGTGGCCCCGCCGTTGCTGCCATCGTGTTGCCGGTTACCGCCA
CATCCGCTATCGTCGCTCCCGCACCCACTGCTGCTACTCCCTGTGGCGAT
CTCCAGGCGTAAGGGACTAAAGGCCGTGCCCGTCCCGATGGTCAATGGGG
GTGGCGTCGGGTCGACATCAACCTCTAGCGTAAGCTTCTGTGCAAAGTCC
TCCTGGATCCTGGGGAGCGGCGGGAGGGCCATTCCAACCTACCCAGGACA
GTGGCACTTTTCAGTGCGCGCTTGTAATGGTTTGAATTTTGTGAGTGGTC
AAAAAGGGAAGTGAAGCGGACGAACAAACAGACAGGAGATGTGCGGGAGA
AGAAGCGAAGCTGAAAGAAAGCGCGGCT
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protein sequence of jgi.p|Nanoce1779_2|590546

>mRNA_5850-protein ID=mRNA_5850-protein|Name=jgi.p|Nanoce1779_2|590546|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MEPLLEILSVLESLLLLVACLRFEDEDIPPDDPPPDVAPPLLPSCCRLPP
HPLSSLPHPLLLLPVAISRRKGLKAVPVPMVNGGGVGSTSTSSVSFCAKS
SWILGSGGRAIPTYPGQWHFSVRACNGLNFVSGQKGK*
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mRNA from alignment at scaffold_11:728184..730061+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5850 ID=mRNA_5850|Name=jgi.p|Nanoce1779_2|590546|organism=Nannochloropsis oceanica|type=mRNA|length=1878bp|location=Sequence derived from alignment at scaffold_11:728184..730061+ (Nannochloropsis oceanica)
CCTCCTCGGCCCCATACCCCCCCGGCGATGCCGGAGGGACAACCCATCGG CTCCCTCCCTCTCTTCCTCCCTCCCCTCCCCTCTGCAAAAATGGATGGTG CTTTAACAGATACCTGGCCGTCGGCCTCTTCTTCGGATCTTTATTCAAAC ACTGCCGCACAAAATCTCGAAAAGAAGGGGAGAACGAGGGCGGGAGGGAA GGAGAGTCCATCTCCCTCAACGCCGAGACCAGCCCCCAATACCCTCCTGA GTGATCGTAAGGAAACCGGCCCATGGCGCATGTGACAAGCGTCAATCCCA CGCCCCAGACGTCGGCGGAATAGCTGTACTCTTCTCCGCAGATGCGTTCT GGCGACATGTACGTAAAAGTCCCCACAAATGTGTCCGCCTGGGAAATAGA GGAATCCAGGTGGCGGACCAAGCCAAAGTCGCTAATTTTGACCTGCCCCT TGTGATTGAGCAGGAGGTTGGCCGGCTTGATGTCACGATGGATCTGTCGC CGTTCATGCAGGAAGGCCAGCCCCTCCAGGACCTCGCGGGCGATATGGGA CAGGACGGCTTCGGCAGCACAGCCCCCGCCATCGACTATTTCTTGCAGTG AGCCTCCATCCATGTATTCCTGGACGATGCTCACGGTCCCTTCAGTAGGG CTGACGTACGCGTCATAAAACGATACCAATTGGGGACATCCAGCTGTCGC CGCCGCCGCTACTGCTGCTGCTGCTGTTGCTTGTGTAGGTGGAGTCTTGC CAACGGCAGCCGCAGCCGCGGCGGCCGCAGCAGCCGCCTCTTTACTTAAC CCTCCTGCGAACAAATCCTCATGCTCTACTGCGGTTTTCCTCTGGGCTTT ACCCTTCCCACTGCCTTTCCGACAATTTTTTGACGGATACCCTGTTCCTG CTGGTGCTGCAGCGGCAGCAGCACCAGCAGGAGGAGTAGGAGTAGGCCGG CCTAACGGAGCTAAATTTGCGTATAGAGCTCTCAGTTCTCTCACCATCTG ATGCCGCCTTCCTTCTTCAAACACCAGAATGGTTTTCACAGCCACCAAGC GCAGGCTGGGAACGTGGATACCTTGCCAAACAGTGCCACCTGTCCCTCGC CCTAGCACGGCCAAGGGTGCCAACGCGTCTTGTAAACTTTGAGTGTCATT GCTCACGCTAACGCTGGGCATGTTGCGACCACTGTCATTTGTGGAAAATG GGGACATGGGCTCACCAGAACGGCCAGGGCCATTACTCAAGATGAAGGAG GGGGAGGCGGCGCCATTACTGCTCTCTCCCCAGGAGCCGGAGGAGGGCGT GGTGGAAAGCTGCCCGCCAATGCTGCTGTTGTGTTTGTAGTATATTGGCT GGCTTGTCTGGGTCAGTCCAGACTTGCGGATCTCGAAGCCAGCGATATGG ATGGAGCCGCTCTTGGAAATACTAAGCGTCTTGGAGTCGCTCTTGTTGCT GGTGGCGTGTCTGCGCTTCGAGGACGAGGACATTCCGCCCGACGACCCCC CCCCTGACGTGGCCCCGCCGTTGCTGCCATCGTGTTGCCGGTTACCGCCA CATCCGCTATCGTCGCTCCCGCACCCACTGCTGCTACTCCCTGTGGCGAT CTCCAGGCGTAAGGGACTAAAGGCCGTGCCCGTCCCGATGGTCAATGGGG GTGGCGTCGGGTCGACATCAACCTCTAGCGTAAGCTTCTGTGCAAAGTCC TCCTGGATCCTGGGGAGCGGCGGGAGGGCCATTCCAACCTACCCAGGACA GTGGCACTTTTCAGTGCGCGCTTGTAATGGTTTGAATTTTGTGAGTGGTC AAAAAGGGAAGTGAAGCGGACGAACAAACAGACAGGAGATGTGCGGGAGA AGAAGCGAAGCTGAAAGAAAGCGCGGCT
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Coding sequence (CDS) from alignment at scaffold_11:728184..730061+

>mRNA_5850 ID=mRNA_5850|Name=jgi.p|Nanoce1779_2|590546|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_11:728184..730061+ (Nannochloropsis oceanica)
ATGGAGCCGCTCTTGGAAATACTAAGCGTCTTGGAGTCGCTCTTGTTGCT
GGTGGCGTGTCTGCGCTTCGAGGACGAGGACATTCCGCCCGACGACCCCC
CCCCTGACGTGGCCCCGCCGTTGCTGCCATCGTGTTGCCGGTTACCGCCA
CATCCGCTATCGTCGCTCCCGCACCCACTGCTGCTACTCCCTGTGGCGAT
CTCCAGGCGTAAGGGACTAAAGGCCGTGCCCGTCCCGATGGTCAATGGGG
GTGGCGTCGGGTCGACATCAACCTCTAGCGTAAGCTTCTGTGCAAAGTCC
TCCTGGATCCTGGGGAGCGGCGGGAGGGCCATTCCAACCTACCCAGGACA
GTGGCACTTTTCAGTGCGCGCTTGTAATGGTTTGAATTTTGTGAGTGGTC
AAAAAGGGAAGTGA
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Synonyms
Publications