jgi.p|Nanoce1779_2|577856, mRNA_585 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577856
Unique NamemRNA_585
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length824
Alignment locationscaffold_3:1456365..1457188 +

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Properties
Property NameValue
TranscriptId577942
TrackFilteredModels2
ProteinId577856
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1456365..1457188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577856gene_585Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577856mRNA_585-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_585CDS_585Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_585 ID=mRNA_585|Name=jgi.p|Nanoce1779_2|577856|organism=Nannochloropsis oceanica|type=mRNA|length=824bp
GGCGCGATGATCCTCCGGGGCCTGTTGGAAGAAGGGATGGTGGGAATGGT
CGGACGCTTGGACTTGCGGTATCGGCTTGTGTCGACGAAGGCCCAGCGGG
ATGGGGGAGGGGAGGAGGGAGGGATGGAGGCGGGTGAGGAGGAGGCGATG
GTACCTTTCATGCCGATGGACCAGGAGGTACTCCTCTCCCTCACAACCTT
TTGGGAGGGGCTGCTGCAGCATTCCTTCTATGCCTCCACCCAGGTCAGAC
ACGCCCCAGTCACTGCGTCATTGCTTGTACGGCTCTCTCTGGCCCACCCC
GCTGTTTCAGCCCTCTATCGCCTCCTCGCCCTCCTTCTACGTGCCCTCCA
AGCCACCCGCATATTTCATCATGATGGGGAGGACGAGGGAGGAAGGGAGG
GAGGACGACCTTCTAGAGGCACTGGTGGGATCATCTTCCCTACCTCCTCC
TTCTTCTCCCCCTCCACCTCCACTTCCCTGCTCTCGCGTGCCGAGACCCG
CGCCCTCCACCGGCTCCTCTCCCACTACCTCCCTCAAGTCCTCCGCCGCC
TAGACTCCTACCAAGACGAACTCCTCGCCTCTGCCCTGAAGATGCTTCTC
TCCTCTCCCCTCCTCCTTCTTCCCCTCCCTCGCCTTCTGCCCGCCCTCCG
TCGGGCCCTCACAACCGGAGTGGGCCACATTCCAACTGCCCGGGTGGCGG
CCGAGGCCTTAGAGCGATGGCAGCTGGCAGCGAGGGAGGAAGGGCAGGAG
GGAGTGAAGGAGGGAGGGAGTGTGGCACAAGCGTTCGAAGCGGCTCTCCC
CCGCGTTCTTCCTCTCTTCGATCT
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protein sequence of jgi.p|Nanoce1779_2|577856

>mRNA_585-protein ID=mRNA_585-protein|Name=jgi.p|Nanoce1779_2|577856|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MGEGRREGWRRVRRRRWYLSCRWTRRYSSPSQPFGRGCCSIPSMPPPRSD
TPQSLRHCLYGSLWPTPLFQPSIASSPSFYVPSKPPAYFIMMGRTREEGR
EDDLLEALVGSSSLPPPSSPPPPPLPCSRVPRPAPSTGSSPTTSLKSSAA
*
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mRNA from alignment at scaffold_3:1456365..1457188+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_585 ID=mRNA_585|Name=jgi.p|Nanoce1779_2|577856|organism=Nannochloropsis oceanica|type=mRNA|length=824bp|location=Sequence derived from alignment at scaffold_3:1456365..1457188+ (Nannochloropsis oceanica)
GGCGCGATGATCCTCCGGGGCCTGTTGGAAGAAGGGATGGTGGGAATGGT
CGGACGCTTGGACTTGCGGTATCGGCTTGTGTCGACGAAGGCCCAGCGGG
ATGGGGGAGGGGAGGAGGGAGGGATGGAGGCGGGTGAGGAGGAGGCGATG
GTACCTTTCATGCCGATGGACCAGGAGGTACTCCTCTCCCTCACAACCTT
TTGGGAGGGGCTGCTGCAGCATTCCTTCTATGCCTCCACCCAGGTCAGAC
ACGCCCCAGTCACTGCGTCATTGCTTGTACGGCTCTCTCTGGCCCACCCC
GCTGTTTCAGCCCTCTATCGCCTCCTCGCCCTCCTTCTACGTGCCCTCCA
AGCCACCCGCATATTTCATCATGATGGGGAGGACGAGGGAGGAAGGGAGG
GAGGACGACCTTCTAGAGGCACTGGTGGGATCATCTTCCCTACCTCCTCC
TTCTTCTCCCCCTCCACCTCCACTTCCCTGCTCTCGCGTGCCGAGACCCG
CGCCCTCCACCGGCTCCTCTCCCACTACCTCCCTCAAGTCCTCCGCCGCC
TAGACTCCTACCAAGACGAACTCCTCGCCTCTGCCCTGAAGATGCTTCTC
TCCTCTCCCCTCCTCCTTCTTCCCCTCCCTCGCCTTCTGCCCGCCCTCCG
TCGGGCCCTCACAACCGGAGTGGGCCACATTCCAACTGCCCGGGTGGCGG
CCGAGGCCTTAGAGCGATGGCAGCTGGCAGCGAGGGAGGAAGGGCAGGAG
GGAGTGAAGGAGGGAGGGAGTGTGGCACAAGCGTTCGAAGCGGCTCTCCC
CCGCGTTCTTCCTCTCTTCGATCT
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Coding sequence (CDS) from alignment at scaffold_3:1456365..1457188+

>mRNA_585 ID=mRNA_585|Name=jgi.p|Nanoce1779_2|577856|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_3:1456365..1457188+ (Nannochloropsis oceanica)
ATGGGGGAGGGGAGGAGGGAGGGATGGAGGCGGGTGAGGAGGAGGCGATG
GTACCTTTCATGCCGATGGACCAGGAGGTACTCCTCTCCCTCACAACCTT
TTGGGAGGGGCTGCTGCAGCATTCCTTCTATGCCTCCACCCAGGTCAGAC
ACGCCCCAGTCACTGCGTCATTGCTTGTACGGCTCTCTCTGGCCCACCCC
GCTGTTTCAGCCCTCTATCGCCTCCTCGCCCTCCTTCTACGTGCCCTCCA
AGCCACCCGCATATTTCATCATGATGGGGAGGACGAGGGAGGAAGGGAGG
GAGGACGACCTTCTAGAGGCACTGGTGGGATCATCTTCCCTACCTCCTCC
TTCTTCTCCCCCTCCACCTCCACTTCCCTGCTCTCGCGTGCCGAGACCCG
CGCCCTCCACCGGCTCCTCTCCCACTACCTCCCTCAAGTCCTCCGCCGCC
TAG
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Synonyms
Publications