jgi.p|Nanoce1779_2|555746, mRNA_5849 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|555746
Unique NamemRNA_5849
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1574
Alignment locationscaffold_11:727580..729354 -

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Properties
Property NameValue
TranscriptId555832
TrackFilteredModels2
ProteinId555746
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:727580..729354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555746gene_5849Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555746mRNA_5849-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5849CDS_5849Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5849 ID=mRNA_5849|Name=jgi.p|Nanoce1779_2|555746|organism=Nannochloropsis oceanica|type=mRNA|length=1574bp
ATGCCCAGCGTTAGCGTGAGCAATGACACTCAAAGTTTACAAGACGCGTT
GGCACCCTTGGCCGTGCTAGGGCGAGGGACAGGTGGCACTGTTTGGCAAG
GTATCCACGTTCCCAGCCTGCGCTTGGTGGCTGTGAAAACCATTCTGGTG
TTTGAAGAAGGAAGGCGGCATCAGATGGTGAGAGAACTGAGAGCTCTATA
CGCAAATTTAGCTCCGTTAGGCCGGCCTACTCCTACTCCTCCTGCTGCAG
CAGCAGCAGTAGCGGCGGCGGCGACAGCTGGATGTCCCCAATTGGTATCG
TTTTATGACGCGTACGTCAGCCCTACTGAAGGGACCGTGAGCATCGTCCA
GGAATACATGGATGGAGGCTCACTGCAAGAAATAGTCGATGGCGGGGGCT
GTGCTGCCGAAGCCGTCCTGTCCCATATCGCCCGCGAGGTCCTGGAGGGG
CTGGCCTTCCTGCATGAACGGCGACAGATCCATCGTGACATCAAGCCGGC
CAACCTCCTGCTCAATCACAAGGGGCAGGTCAAAATTAGCGACTTTGGCT
TGGTCCGCCACCTGGATTCCTCTATTTCCCAGGCGGACACATTTGTGGGG
ACTTTTACGTACATGTCGCCAGAACGCATCTGCGGAGAAGAGTACAGCTA
TTCCGCCGACGTCTGGGGCGTGGGATTGACGCTTGTCACATGCGCCATGG
GCCGGTTTCCTTACGATCACTCAGGAGGGTATTGGGGGCTGGTCTCGGCG
TTGAGGGAGATGGACTCTCCTTCCCTCCCGCCCTCGTTCTCCCCTTCTTT
TCGAGATTTTGTGCGGCAGTGTTTGAATAAAGATCCGAAGAAGAGGCCGA
CGGCCAGGTATCTGTTAAAGCACCATCCATTTTTGCAGAGGGGAGGGGAG
GGAGGAAGAGAGGGAGGGAGCCGATGGGTTGTCCCTCCGGCATCGCCGGG
GGGGTATGGGGCCGAGGAGGAGGAGGAGGAAGAGGAGGAGGGAGGGATGG
GAGGGGGGTCGGTGAGCGCGAGGAGAGAATTGATGGATATAGTGCAGGTC
GTGAAGGCGTACTACCGTCGTTTGTGGAACGACAGCAGCAGCAGCAGCTG
CAGTAGTAGTAATAGTAGTACTAGTAGTAGAACTAGTACTAGTACTAGTG
GTAGCAGGAGTGGTGGTGCCCAAGGAGGAATATTGTTGTTGCCTAATACG
CAAGCACAGGCCTTAGCGGGGCTGGCGAGGCAGCTGGGGGTGCCATCGAG
GGTCGTGAGGGAGGCGTTTCGAATGATGCTGAGAGAGCTGATCGAGGAGC
AGGTGGAGGGCGGGAGGGAGAAGGAGGAGGAGGATGGGGCGGAGGCAAGA
AGGAGGAGAGGGAGTGAGTAAGTGAGTGCAGATTTTTTTCCTTCTTCCTT
CAATAAGAGATATGGAAACGGGAGATATTGAGGGGAAAAGGGAGGGACAC
ATACAGGCATGACGTGAATATCTTCATAAATATACATATATTATGTACAC
ACACACACATATTATCTTTCAACACTAGAGTCTGAACGAAAACACTAGGA
AGTGAATCATAGACTTTTTGGAAA
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protein sequence of jgi.p|Nanoce1779_2|555746

>mRNA_5849-protein ID=mRNA_5849-protein|Name=jgi.p|Nanoce1779_2|555746|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MPSVSVSNDTQSLQDALAPLAVLGRGTGGTVWQGIHVPSLRLVAVKTILV
FEEGRRHQMVRELRALYANLAPLGRPTPTPPAAAAAVAAAATAGCPQLVS
FYDAYVSPTEGTVSIVQEYMDGGSLQEIVDGGGCAAEAVLSHIAREVLEG
LAFLHERRQIHRDIKPANLLLNHKGQVKISDFGLVRHLDSSISQADTFVG
TFTYMSPERICGEEYSYSADVWGVGLTLVTCAMGRFPYDHSGGYWGLVSA
LREMDSPSLPPSFSPSFRDFVRQCLNKDPKKRPTARYLLKHHPFLQRGGE
GGREGGSRWVVPPASPGGYGAEEEEEEEEEGGMGGGSVSARRELMDIVQV
VKAYYRRLWNDSSSSSCSSSNSSTSSRTSTSTSGSRSGGAQGGILLLPNT
QAQALAGLARQLGVPSRVVREAFRMMLRELIEEQVEGGREKEEEDGAEAR
RRRGSE*
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mRNA from alignment at scaffold_11:727580..729354-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5849 ID=mRNA_5849|Name=jgi.p|Nanoce1779_2|555746|organism=Nannochloropsis oceanica|type=mRNA|length=1775bp|location=Sequence derived from alignment at scaffold_11:727580..729354- (Nannochloropsis oceanica)
ATGCCCAGCGTTAGCGTGAGCAATGACACTCAAAGTTTACAAGACGCGTT
GGCACCCTTGGCCGTGCTAGGGCGAGGGACAGGTGGCACTGTTTGGCAAG
GTATCCACGTTCCCAGCCTGCGCTTGGTGGCTGTGAAAACCATTCTGGTG
TTTGAAGAAGGAAGGCGGCATCAGATGGTGAGAGAACTGAGAGCTCTATA
CGCAAATTTAGCTCCGTTAGGCCGGCCTACTCCTACTCCTCCTGCTGGTG
CTGCTGCCGCTGCAGCACCAGCAGGAACAGGGTATCCGTCAAAAAATTGT
CGGAAAGGCAGTGGGAAGGGTAAAGCCCAGAGGAAAACCGCAGTAGAGCA
TGAGGATTTGTTCGCAGGAGGGTTAAGTAAAGAGGCGGCTGCTGCGGCCG
CCGCGGCTGCGGCTGCCGTTGGCAAGACTCCACCTACACAAGCAACAGCA
GCAGCAGCAGTAGCGGCGGCGGCGACAGCTGGATGTCCCCAATTGGTATC
GTTTTATGACGCGTACGTCAGCCCTACTGAAGGGACCGTGAGCATCGTCC
AGGAATACATGGATGGAGGCTCACTGCAAGAAATAGTCGATGGCGGGGGC
TGTGCTGCCGAAGCCGTCCTGTCCCATATCGCCCGCGAGGTCCTGGAGGG
GCTGGCCTTCCTGCATGAACGGCGACAGATCCATCGTGACATCAAGCCGG
CCAACCTCCTGCTCAATCACAAGGGGCAGGTCAAAATTAGCGACTTTGGC
TTGGTCCGCCACCTGGATTCCTCTATTTCCCAGGCGGACACATTTGTGGG
GACTTTTACGTACATGTCGCCAGAACGCATCTGCGGAGAAGAGTACAGCT
ATTCCGCCGACGTCTGGGGCGTGGGATTGACGCTTGTCACATGCGCCATG
GGCCGGTTTCCTTACGATCACTCAGGAGGGTATTGGGGGCTGGTCTCGGC
GTTGAGGGAGATGGACTCTCCTTCCCTCCCGCCCTCGTTCTCCCCTTCTT
TTCGAGATTTTGTGCGGCAGTGTTTGAATAAAGATCCGAAGAAGAGGCCG
ACGGCCAGGTATCTGTTAAAGCACCATCCATTTTTGCAGAGGGGAGGGGA
GGGAGGAAGAGAGGGAGGGAGCCGATGGGTTGTCCCTCCGGCATCGCCGG
GGGGGTATGGGGCCGAGGAGGAGGAGGAGGAAGAGGAGGAGGGAGGGATG
GGAGGGGGGTCGGTGAGCGCGAGGAGAGAATTGATGGATATAGTGCAGGT
CGTGAAGGCGTACTACCGTCGTTTGTGGAACGACAGCAGCAGCAGCAGCT
GCAGTAGTAGTAATAGTAGTACTAGTAGTAGAACTAGTACTAGTACTAGT
GGTAGCAGGAGTGGTGGTGCCCAAGGAGGAATATTGTTGTTGCCTAATAC
GCAAGCACAGGCCTTAGCGGGGCTGGCGAGGCAGCTGGGGGTGCCATCGA
GGGTCGTGAGGGAGGCGTTTCGAATGATGCTGAGAGAGCTGATCGAGGAG
CAGGTGGAGGGCGGGAGGGAGAAGGAGGAGGAGGATGGGGCGGAGGCAAG
AAGGAGGAGAGGGAGTGAGTAAGTGAGTGCAGATTTTTTTCCTTCTTCCT
TCAATAAGAGATATGGAAACGGGAGATATTGAGGGGAAAAGGGAGGGACA
CATACAGGCATGACGTGAATATCTTCATAAATATACATATATTATGTACA
CACACACACATATTATCTTTCAACACTAGAGTCTGAACGAAAACACTAGG
AAGTGAATCATAGACTTTTTGGAAA
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Coding sequence (CDS) from alignment at scaffold_11:727580..729354-

>mRNA_5849 ID=mRNA_5849|Name=jgi.p|Nanoce1779_2|555746|organism=Nannochloropsis oceanica|type=CDS|length=2742bp|location=Sequence derived from alignment at scaffold_11:727580..729354- (Nannochloropsis oceanica)
CAGCAGCAGCAGTAGCGGCGGCGGCGACAGCTGGATGTCCCCAATTGGTA
TCGTTTTATGACGCGTACGTCAGCCCTACTGAAGGGACCGTGAGCATCGT
CCAGGAATACATGGATGGAGGCTCACTGCAAGAAATAGTCGATGGCGGGG
GCTGTGCTGCCGAAGCCGTCCTGTCCCATATCGCCCGCGAGGTCCTGGAG
GGGCTGGCCTTCCTGCATGAACGGCGACAGATCCATCGTGACATCAAGCC
GGCCAACCTCCTGCTCAATCACAAGGGGCAGGTCAAAATTAGCGACTTTG
GCTTGGTCCGCCACCTGGATTCCTCTATTTCCCAGGCGGACACATTTGTG
GGGACTTTTACGTACATGTCGCCAGAACGCATCTGCGGAGAAGAGTACAG
CTATTCCGCCGACGTCTGGGGCGTGGGATTGACGCTTGTCACATGCGCCA
TGGGCCGGTTTCCTTACGATCACTCAGGAGGGTATTGGGGGCTGGTCTCG
GCGTTGAGGGAGATGGACTCTCCTTCCCTCCCGCCCTCGTTCTCCCCTTC
TTTTCGAGATTTTGTGCGGCAGTGTTTGAATAAAGATCCGAAGAAGAGGC
CGACGGCCAGGTATCTGTTAAAGCACCATCCATTTTTGCAGAGGGGAGGG
GAGGGAGGAAGAGAGGGAGGGAGCCGATGGGTTGTCCCTCCGGCATCGCC
GGGGGGGTATGGGGCCGAGGAGGAGGAGGAGGAAGAGGAGGAGGGAGGGA
TGGGAGGGGGGTCGGTGAGCGCGAGGAGAGAATTGATGGATATAGTGCAG
GTCGTGAAGGCGTACTACCGTCGTTTGTGGAACGACAGCAGCAGCAGCAG
CTGCAGTAGTAGTAATAGTAGTACTAGTAGTAGAACTAGTACTAGTACTA
GTGGTAGCAGGAGTGGTGGTGCCCAAGGAGGAATATTGTTGTTGCCTAAT
ACGCAAGCACAGGCCTTAGCGGGGCTGGCGAGGCAGCTGGGGGTGCCATC
GAGGGTCGTGAGGGAGGCGTTTCGAATGATGCTGAGAGAGCTGATCGAGG
AGCAGGTGGAGGGCGGGAGGGAGAAGGAGGAGGAGGATGGGGCGGAGGCA
AGAAGGAGGAGAGGGAGTGAGTAAATGCCCAGCGTTAGCGTGAGCAATGA
CACTCAAAGTTTACAAGACGCGTTGGCACCCTTGGCCGTGCTAGGGCGAG
GGACAGGTGGCACTGTTTGGCAAGGTATCCACGTTCCCAGCCTGCGCTTG
GTGGCTGTGAAAACCATTCTGGTGTTTGAAGAAGGAAGGCGGCATCAGAT
GGTGAGAGAACTGAGAGCTCTATACGCAAATTTAGCTCCGTTAGGCCGGC
CTACTCCTACTCCTCCTGCTGCAGCAGCAGCAGTAGCGGCGGCGGCGACA
GCTGGATGTCCCCAATTGGTATCGTTTTATGACGCGTACGTCAGCCCTAC
TGAAGGGACCGTGAGCATCGTCCAGGAATACATGGATGGAGGCTCACTGC
AAGAAATAGTCGATGGCGGGGGCTGTGCTGCCGAAGCCGTCCTGTCCCAT
ATCGCCCGCGAGGTCCTGGAGGGGCTGGCCTTCCTGCATGAACGGCGACA
GATCCATCGTGACATCAAGCCGGCCAACCTCCTGCTCAATCACAAGGGGC
AGGTCAAAATTAGCGACTTTGGCTTGGTCCGCCACCTGGATTCCTCTATT
TCCCAGGCGGACACATTTGTGGGGACTTTTACGTACATGTCGCCAGAACG
CATCTGCGGAGAAGAGTACAGCTATTCCGCCGACGTCTGGGGCGTGGGAT
TGACGCTTGTCACATGCGCCATGGGCCGGTTTCCTTACGATCACTCAGGA
GGGTATTGGGGGCTGGTCTCGGCGTTGAGGGAGATGGACTCTCCTTCCCT
CCCGCCCTCGTTCTCCCCTTCTTTTCGAGATTTTGTGCGGCAGTGTTTGA
ATAAAGATCCGAAGAAGAGGCCGACGGCCAGGTATCTGTTAAAGCACCAT
CCATTTTTGCAGAGGGGAGGGGAGGGAGGAAGAGAGGGAGGGAGCCGATG
GGTTGTCCCTCCGGCATCGCCGGGGGGGTATGGGGCCGAGGAGGAGGAGG
AGGAAGAGGAGGAGGGAGGGATGGGAGGGGGGTCGGTGAGCGCGAGGAGA
GAATTGATGGATATAGTGCAGGTCGTGAAGGCGTACTACCGTCGTTTGTG
GAACGACAGCAGCAGCAGCAGCTGCAGTAGTAGTAATAGTAGTACTAGTA
GTAGAACTAGTACTAGTACTAGTGGTAGCAGGAGTGGTGGTGCCCAAGGA
GGAATATTGTTGTTGCCTAATACGCAAGCACAGGCCTTAGCGGGGCTGGC
GAGGCAGCTGGGGGTGCCATCGAGGGTCGTGAGGGAGGCGTTTCGAATGA
TGCTGAGAGAGCTGATCGAGGAGCAGGTGGAGGGCGGGAGGGAGAAGGAG
GAGGAGGATGGGGCGGAGGCAAGAAGGAGGAGAGGGAGTGAGTAAATGCC
CAGCGTTAGCGTGAGCAATGACACTCAAAGTTTACAAGACGCGTTGGCAC
CCTTGGCCGTGCTAGGGCGAGGGACAGGTGGCACTGTTTGGCAAGGTATC
CACGTTCCCAGCCTGCGCTTGGTGGCTGTGAAAACCATTCTGGTGTTTGA
AGAAGGAAGGCGGCATCAGATGGTGAGAGAACTGAGAGCTCTATACGCAA
ATTTAGCTCCGTTAGGCCGGCCTACTCCTACTCCTCCTGCTG
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Synonyms
Publications