jgi.p|Nanoce1779_2|590531, mRNA_5846 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590531
Unique Name	mRNA_5846
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1685
Alignment location	scaffold_11:721864..723548 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590617
Track	FilteredModels2
ProteinId	590531

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:721864..723548 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590531	gene_5846	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590531	mRNA_5846-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5846	CDS_5846	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:721864..723548+
coding sequence from alignment at scaffold_11:721864..723548+

mRNA sequence

>mRNA_5846 ID=mRNA_5846|Name=jgi.p|Nanoce1779_2|590531|organism=Nannochloropsis oceanica|type=mRNA|length=1685bp
ACAGAACAACACAGATCCAGGCCGATCTATACTTCAACATTGGGTAAATC
TAAGCTTAAACTGCCGACTACCCTGTTATTTTTCATCATACTTGGACGAG
TCTGGCCCCACTTTACAAAAAGCCCGCCGCGCCTCGCCCGTTGCCACCAC
GCCATTGGTGGAAACATGCAGCACTGCGTCCTGCTCATCCTGCTTCTCCT
TGTTATCATTACCCTCCACTTCACTACCGCCGAACTTCTGCTTTCTTACG
TGGTTCTTCGTCATGGTGCCCGACATGTCCTTGCTAAGACAAGCACTCTT
GGGGAGACAGGCATCTTTGGGGGGCCCACCCTCTTGCCGCAGGGCAAAAA
ACAATGCTATCAAGCCGGACAAGCCTTTCGTGCGCGATACCTTGATCCAA
TCACCTGCAACACTACCAATACATGTTTGAATCGGGCAGGTGCCGCGGGA
TCGAGGTACGGCATTGTCGATGAGAGAAACGATGACACGAATTTCAACAA
CTACAACTCTCTGGTCAACTCCTCCGCCTTGCACCGCACGATCCTAAGCG
CCAGTAGCTTCTTGCTTGGTGCCTTCTCCGAAGGTGACACATTTACAAGG
AGAGTAAATGAGCCATATCTGATACAGCAAACCCCTCCCGTGTTCTCAAC
CGAGGACGGACAAGACTGGCGTATTCGCCCGTACACTAAATGCCCCTCTT
ATAGGCGTGATTTGCAAAATTGGTTCTTGAGCGCTGAATTTTTAGAGAAA
GAAGCCGAGTCCGCATCTTTGCGCATGCAGATTCAGTCTCTTCTTGGGCC
GAGCCTGAATGCCTCCCTTGCGAATTGGTGGAACATATATGATAATTTTA
ATATCTGGCACACGTACCACGTGGGTGACGCCATGCCCCCGCTCGACGAT
AGTCTATACGCACGCGTCATCTCCCTTGCCGTGTGGCTCGAGACCACCAA
AATGAAATCCTCCCTTGTCCAGAACCGCCTCGGTGGGGGCCTTCTCGCGG
ATGTCCTGGGACGAATGGAACAAGCCGTCCAGCACCGCGAGACCGGCTAC
CCAACCCATATCTACAAGCTCCTGACTATTGCCGGGCACTTTAGTACACA
GCTCGGCGTCCTTGCCGCGTTACAAGCCGATAAGGTCACAAATAGCACCT
TACCCTGGCTGGGGGAGAAAATTCCCTCCCCTGCTTCAGTCCTTGTTTTT
GAGTTGCATCACCGACCTGCCTCTGGGAAGGGGCAAGGGGAAGCAGCGAG
GGAGGAGGGATACTACGTCCGGATAGTTATTCAGGATGGTGCCGGACAAG
GGTACCAAGAGGTGCCTTTGCTGTGCAGTCGTGGATCGGAGGGCAGGGGA
GTGGGAGGCAAGGGGGGAAAGGACGAGGGGACAACTTTTGAATGTCCGCT
GGAAGATTTCTTCAAGCTGGCGGCGCCACAGGCCTTGAGTATGAGGGAAT
GGTGTGCGGTGTGCGAAAATGATGATATGCTGGCTTGCAAGGTGGCGAAA
GAAGAGAAGGGAGGGAGGCGGAAGATGACGCGGTAGATGAGGAGGAGGAG
TAGGAGGAGGAGGAGAAGAAGAAAGATAAGGAGGAGGTTCTCATCTTCCC
TTCTTCCCCTATGTAGTTTCCTATTGTCTCAATAAGGAGCAATAGATGAG
ACAAACCAACATACTGGTGTATATTTAAACACTTA

protein sequence of jgi.p|Nanoce1779_2|590531

>mRNA_5846-protein ID=mRNA_5846-protein|Name=jgi.p|Nanoce1779_2|590531|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MQHCVLLILLLLVIITLHFTTAELLLSYVVLRHGARHVLAKTSTLGETGI
FGGPTLLPQGKKQCYQAGQAFRARYLDPITCNTTNTCLNRAGAAGSRYGI
VDERNDDTNFNNYNSLVNSSALHRTILSASSFLLGAFSEGDTFTRRVNEP
YLIQQTPPVFSTEDGQDWRIRPYTKCPSYRRDLQNWFLSAEFLEKEAESA
SLRMQIQSLLGPSLNASLANWWNIYDNFNIWHTYHVGDAMPPLDDSLYAR
VISLAVWLETTKMKSSLVQNRLGGGLLADVLGRMEQAVQHRETGYPTHIY
KLLTIAGHFSTQLGVLAALQADKVTNSTLPWLGEKIPSPASVLVFELHHR
PASGKGQGEAAREEGYYVRIVIQDGAGQGYQEVPLLCSRGSEGRGVGGKG
GKDEGTTFECPLEDFFKLAAPQALSMREWCAVCENDDMLACKVAKEEKGG
RRKMTR*

mRNA from alignment at scaffold_11:721864..723548+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5846 ID=mRNA_5846|Name=jgi.p|Nanoce1779_2|590531|organism=Nannochloropsis oceanica|type=mRNA|length=1685bp|location=Sequence derived from alignment at scaffold_11:721864..723548+ (Nannochloropsis oceanica)
ACAGAACAACACAGATCCAGGCCGATCTATACTTCAACATTGGGTAAATC
TAAGCTTAAACTGCCGACTACCCTGTTATTTTTCATCATACTTGGACGAG
TCTGGCCCCACTTTACAAAAAGCCCGCCGCGCCTCGCCCGTTGCCACCAC
GCCATTGGTGGAAACATGCAGCACTGCGTCCTGCTCATCCTGCTTCTCCT
TGTTATCATTACCCTCCACTTCACTACCGCCGAACTTCTGCTTTCTTACG
TGGTTCTTCGTCATGGTGCCCGACATGTCCTTGCTAAGACAAGCACTCTT
GGGGAGACAGGCATCTTTGGGGGGCCCACCCTCTTGCCGCAGGGCAAAAA
ACAATGCTATCAAGCCGGACAAGCCTTTCGTGCGCGATACCTTGATCCAA
TCACCTGCAACACTACCAATACATGTTTGAATCGGGCAGGTGCCGCGGGA
TCGAGGTACGGCATTGTCGATGAGAGAAACGATGACACGAATTTCAACAA
CTACAACTCTCTGGTCAACTCCTCCGCCTTGCACCGCACGATCCTAAGCG
CCAGTAGCTTCTTGCTTGGTGCCTTCTCCGAAGGTGACACATTTACAAGG
AGAGTAAATGAGCCATATCTGATACAGCAAACCCCTCCCGTGTTCTCAAC
CGAGGACGGACAAGACTGGCGTATTCGCCCGTACACTAAATGCCCCTCTT
ATAGGCGTGATTTGCAAAATTGGTTCTTGAGCGCTGAATTTTTAGAGAAA
GAAGCCGAGTCCGCATCTTTGCGCATGCAGATTCAGTCTCTTCTTGGGCC
GAGCCTGAATGCCTCCCTTGCGAATTGGTGGAACATATATGATAATTTTA
ATATCTGGCACACGTACCACGTGGGTGACGCCATGCCCCCGCTCGACGAT
AGTCTATACGCACGCGTCATCTCCCTTGCCGTGTGGCTCGAGACCACCAA
AATGAAATCCTCCCTTGTCCAGAACCGCCTCGGTGGGGGCCTTCTCGCGG
ATGTCCTGGGACGAATGGAACAAGCCGTCCAGCACCGCGAGACCGGCTAC
CCAACCCATATCTACAAGCTCCTGACTATTGCCGGGCACTTTAGTACACA
GCTCGGCGTCCTTGCCGCGTTACAAGCCGATAAGGTCACAAATAGCACCT
TACCCTGGCTGGGGGAGAAAATTCCCTCCCCTGCTTCAGTCCTTGTTTTT
GAGTTGCATCACCGACCTGCCTCTGGGAAGGGGCAAGGGGAAGCAGCGAG
GGAGGAGGGATACTACGTCCGGATAGTTATTCAGGATGGTGCCGGACAAG
GGTACCAAGAGGTGCCTTTGCTGTGCAGTCGTGGATCGGAGGGCAGGGGA
GTGGGAGGCAAGGGGGGAAAGGACGAGGGGACAACTTTTGAATGTCCGCT
GGAAGATTTCTTCAAGCTGGCGGCGCCACAGGCCTTGAGTATGAGGGAAT
GGTGTGCGGTGTGCGAAAATGATGATATGCTGGCTTGCAAGGTGGCGAAA
GAAGAGAAGGGAGGGAGGCGGAAGATGACGCGGTAGATGAGGAGGAGGAG
TAGGAGGAGGAGGAGAAGAAGAAAGATAAGGAGGAGGTTCTCATCTTCCC
TTCTTCCCCTATGTAGTTTCCTATTGTCTCAATAAGGAGCAATAGATGAG
ACAAACCAACATACTGGTGTATATTTAAACACTTA

Coding sequence (CDS) from alignment at scaffold_11:721864..723548+

>mRNA_5846 ID=mRNA_5846|Name=jgi.p|Nanoce1779_2|590531|organism=Nannochloropsis oceanica|type=CDS|length=1371bp|location=Sequence derived from alignment at scaffold_11:721864..723548+ (Nannochloropsis oceanica)
ATGCAGCACTGCGTCCTGCTCATCCTGCTTCTCCTTGTTATCATTACCCT
CCACTTCACTACCGCCGAACTTCTGCTTTCTTACGTGGTTCTTCGTCATG
GTGCCCGACATGTCCTTGCTAAGACAAGCACTCTTGGGGAGACAGGCATC
TTTGGGGGGCCCACCCTCTTGCCGCAGGGCAAAAAACAATGCTATCAAGC
CGGACAAGCCTTTCGTGCGCGATACCTTGATCCAATCACCTGCAACACTA
CCAATACATGTTTGAATCGGGCAGGTGCCGCGGGATCGAGGTACGGCATT
GTCGATGAGAGAAACGATGACACGAATTTCAACAACTACAACTCTCTGGT
CAACTCCTCCGCCTTGCACCGCACGATCCTAAGCGCCAGTAGCTTCTTGC
TTGGTGCCTTCTCCGAAGGTGACACATTTACAAGGAGAGTAAATGAGCCA
TATCTGATACAGCAAACCCCTCCCGTGTTCTCAACCGAGGACGGACAAGA
CTGGCGTATTCGCCCGTACACTAAATGCCCCTCTTATAGGCGTGATTTGC
AAAATTGGTTCTTGAGCGCTGAATTTTTAGAGAAAGAAGCCGAGTCCGCA
TCTTTGCGCATGCAGATTCAGTCTCTTCTTGGGCCGAGCCTGAATGCCTC
CCTTGCGAATTGGTGGAACATATATGATAATTTTAATATCTGGCACACGT
ACCACGTGGGTGACGCCATGCCCCCGCTCGACGATAGTCTATACGCACGC
GTCATCTCCCTTGCCGTGTGGCTCGAGACCACCAAAATGAAATCCTCCCT
TGTCCAGAACCGCCTCGGTGGGGGCCTTCTCGCGGATGTCCTGGGACGAA
TGGAACAAGCCGTCCAGCACCGCGAGACCGGCTACCCAACCCATATCTAC
AAGCTCCTGACTATTGCCGGGCACTTTAGTACACAGCTCGGCGTCCTTGC
CGCGTTACAAGCCGATAAGGTCACAAATAGCACCTTACCCTGGCTGGGGG
AGAAAATTCCCTCCCCTGCTTCAGTCCTTGTTTTTGAGTTGCATCACCGA
CCTGCCTCTGGGAAGGGGCAAGGGGAAGCAGCGAGGGAGGAGGGATACTA
CGTCCGGATAGTTATTCAGGATGGTGCCGGACAAGGGTACCAAGAGGTGC
CTTTGCTGTGCAGTCGTGGATCGGAGGGCAGGGGAGTGGGAGGCAAGGGG
GGAAAGGACGAGGGGACAACTTTTGAATGTCCGCTGGAAGATTTCTTCAA
GCTGGCGGCGCCACAGGCCTTGAGTATGAGGGAATGGTGTGCGGTGTGCG
AAAATGATGATATGCTGGCTTGCAAGGTGGCGAAAGAAGAGAAGGGAGGG
AGGCGGAAGATGACGCGGTAG

Synonyms

Publications