jgi.p|Nanoce1779_2|630603, mRNA_5845 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|630603
Unique NamemRNA_5845
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1498
Alignment locationscaffold_11:719306..721341 -

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Properties
Property NameValue
TranscriptId630689
TrackFilteredModels2
ProteinId630603
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:719306..721341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630603gene_5845Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630603mRNA_5845-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5845CDS_5845Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5845 ID=mRNA_5845|Name=jgi.p|Nanoce1779_2|630603|organism=Nannochloropsis oceanica|type=mRNA|length=1498bp
AACAGCAAATCAGCATCATGCAAAAGGACTACCGCTCCCTCAAGCTTTTG
GGCGAAGGGGCCTTTGGGCAAGTATATCTGATGCGCCATGTTCCCACGCA
GCACCTCGTGTGTGTCAAGGCCTGCAAGGAAGGCAAGGACGGCCCGGTGC
CGTGGCGAGAGGTCAATATAATGCAAAGTCTCTGCCACCCGTGCATTGTC
CGGTACCGAGACAACTTTGGCGCGGGCGGTATGTTGTACATTGTGATGCA
ATACGCTGACAAGGGCGACTTGTCTTTCAAGCTCAAGGCCGCCCGTCGTT
CTACTCCTCGTATGCACTTTCCCGAATCACAAATTTGGCATTGGTTCAGT
CAGCTTTGTCTGGCCTTGGAATATATGCACGCTCGCAAGATTATCCATCG
CGACATTAAGCCGCCCAACATCTTTTTGCTCGGCCCGGACGAACGATTGG
TCTTGGGGGACGTCGGCGTGGCCAAGAACCTCGACACCACTAAGGCATTT
GCCCACACGGGTATTGGCACCCCCTATTATATGGCCCCGGAGATTTTTGC
CAACAAAGGGCATAACACGAAGGCGGACGTGTGGTCGCTGGGAGTACTGC
TGTATGAGCTTGCCTACCTCCGGCAAGCATTCGACGGCGAGTCCGTTCAA
GAAATAGGCAACAAAGTAGTAAGTGGCCGATTCCATCCCGTGATGTCCGA
GGACAATCATCGATACAGCAGTGCTCTGGGCGATGTATTGATTGAATTGT
TAAACGTTAATCCGAATCGGCGCCCTCCAGTTGCAGATTTACTCAAGACA
CGACCGGTCATTACGCGGCGTGCACAGGAGTGGAGCAAGCAGGTGCTTTT
AGCGGCAGCTGACCCAGAAATTGAGAAAGTGCGGCCCGAAACAACTATGT
GCGTTTCCCCGAAAGCCAAGAGAGTAAGAGGGCCGTGCGCTCCATCAGCA
GCGGAGGCAGGCCAACTGCCTCTGGGACGGCCAGCACGATAAATACGGAG
GAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAGCAAATCCTGGCGATGACGATGAGTGGGCGCATACAAGAGTCG
CGTGACTTTCTAATTCGGGTTTTGGGAAATGAAATGTTCGAAGAGGTGCA
CAGCCGAAGCGGGAAGAGTGAGGAGGGGGAGGAGAGGTTGGAGAGCCTGT
TTGTGGGTGATAAGGCGAAGTACTTCGGGCTGTTTCAGCAGTTGTTGGCA
ATGGAGGCGGCACAGCGGGGCGATATTTCCCTCTTGCTTGAATCAGTGGG
GACAAGAGGAAGAGGAAAAGGTTTGCGCGCAAGGGCAGAGGGGGGGCAAT
CGTGAGAAAGGAGATCAATTTTGTTCGTGGCTTGTGGGAAGTGGAATGTG
GGTAGCAGCAAATAGCAAATAGTCTTTATTTAGAACACAGAAGAAGAG
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protein sequence of jgi.p|Nanoce1779_2|630603

>mRNA_5845-protein ID=mRNA_5845-protein|Name=jgi.p|Nanoce1779_2|630603|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MQKDYRSLKLLGEGAFGQVYLMRHVPTQHLVCVKACKEGKDGPVPWREVN
IMQSLCHPCIVRYRDNFGAGGMLYIVMQYADKGDLSFKLKAARRSTPRMH
FPESQIWHWFSQLCLALEYMHARKIIHRDIKPPNIFLLGPDERLVLGDVG
VAKNLDTTKAFAHTGIGTPYYMAPEIFANKGHNTKADVWSLGVLLYELAY
LRQAFDGESVQEIGNKVVSGRFHPVMSEDNHRYSSALGDVLIELLNVNPN
RRPPVADLLKTRPVITRRAQEWSKQVLLAAADPEIEKVRPETTMCVSPKA
KRVRGPCAPSAAEAGQLPLGRPAR*
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mRNA from alignment at scaffold_11:719306..721341-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5845 ID=mRNA_5845|Name=jgi.p|Nanoce1779_2|630603|organism=Nannochloropsis oceanica|type=mRNA|length=2036bp|location=Sequence derived from alignment at scaffold_11:719306..721341- (Nannochloropsis oceanica)
AACAGCAAATCAGCATCATGCAAAAGGACTACCGCTCCCTCAAGCTTTTG
GGCGAAGGGGCCTTTGGGCAAGTATATCTGATGCGCCATGTTCCCACGCA
GCACCTCGTGTGTGTCAAGGCCTGCAAGGAAGGCAAGGACGGCCCGGTGC
CGTGGCGAGAGGTCAATATAATGCAAAGTCTCTGCCACCCGTGCATTGTC
CGGTACCGAGACAACTTTGGCGCGGGCGGTATGTTGTACATTGTGATGCA
ATACGCTGACAAGGGCGACTTGTCTTTCAAGCTCAAGGCCGCCCGTCGTT
CTACTCCTCGTATGCACTTTCCCGAATCACAAATTTGGCATTGGTTCAGT
CAGCTTTGTCTGGCCTTGGAATATATGCACGCTCGCAAGATTATCCATCG
CGACATTAAGCCGCCCAACATCTTTTTGCTCGGCCCGGACGAACGATTGG
TCTTGGGGGACGTCGGCGTGGCCAAGAACCTCGACACCACTAAGGCATTT
GCCCACACGGGTATTGGCACCCCCTATTATATGGCCCCGGAGATTTTTGC
CAACAAAGGGCATAACACGAAGGCGGACGTGTGGTCGCTGGGAGTACTGC
TGTATGAGCTTGCCTACCTCCGGCAAGCATTCGACGGCGAGTCCGTTCAA
GAAATAGGCAACAAAGTAGTAAGTGGCCGATTCCATCCCGTGATGTCCGA
GGACAATCATCGATACAGCAGTGCTCTGGGCGATGTATTGATTGAATTGT
TAAACGTTAATCCGAATCGGCGCCCTCCAGTTGCAGATTTACTCAAGACA
CGACCGGTCATTACGCGGCGTGCACAGGAGTGGAGCAAGCAGGTGCTTTT
AGCGGCAGCTGACCCAGAAATTGAGAAAGGTGTGGATGTCAGCGCGGAGC
AGAAATTGGCTTTGCAACTACAGATCAAGATGCTCTGGCCGGCGGTGGCG
TTTGCTGCATCCGTGCCATCAGCGTCGTCGTCTTCATTCTCCTACCCCAC
TCTCTCCCTCCCCTCCTCGTCCTCCTCTTCCTCGTCGTCATTCCCATCTC
ACTCTTCTTCCGCAACGCCGAGGCAACCCAAATCCTCCTTCTATTCGTTA
TCGTCATCATCATCATCATCATCAGTAGCAGCAGCAGCAGCAGTGGATGC
GAAGAGACAGTCCACGGCATTTCAAGAATCCGATCTGCAGCAGGTGCTTG
AAAAATTGCGAAAGGAGCGATCGGCACGATTAGAAAGCAGCCTCATGACG
ATGTCAATCTCGGAGGCGCCTTTGATGAGTCAGAAGGAGCCCGAGAAGGA
CGGGCGGGCCGAAAGGTGGGAAGAGCAGAAAGTGGGCGATGTAGGAGGGA
TCAGCAAGTCAGATTGGCTGCCCACGTCCGTCCCTGAAACCTCATCGGAT
CTGTTTCCTCTTGCAAGTGCGGCCCGAAACAACTATGTGCGTTTCCCCGA
AAGCCAAGAGAGTAAGAGGGCCGTGCGCTCCATCAGCAGCGGAGGCAGGC
CAACTGCCTCTGGGACGGCCAGCACGATAAATACGGAGGAGCAGCAGCAG
CAGCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAAA
TCCTGGCGATGACGATGAGTGGGCGCATACAAGAGTCGCGTGACTTTCTA
ATTCGGGTTTTGGGAAATGAAATGTTCGAAGAGGTGCACAGCCGAAGCGG
GAAGAGTGAGGAGGGGGAGGAGAGGTTGGAGAGCCTGTTTGTGGGTGATA
AGGCGAAGTACTTCGGGCTGTTTCAGCAGTTGTTGGCAATGGAGGCGGCA
CAGCGGGGCGATATTTCCCTCTTGCTTGAATCAGTGGGGACAAGAGGAAG
AGGAAAAGGTTTGCGCGCAAGGGCAGAGGGGGGGCAATCGTGAGAAAGGA
GATCAATTTTGTTCGTGGCTTGTGGGAAGTGGAATGTGGGTAGCAGCAAA
TAGCAAATAGTCTTTATTTAGAACACAGAAGAAGAG
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Coding sequence (CDS) from alignment at scaffold_11:719306..721341-

>mRNA_5845 ID=mRNA_5845|Name=jgi.p|Nanoce1779_2|630603|organism=Nannochloropsis oceanica|type=CDS|length=1950bp|location=Sequence derived from alignment at scaffold_11:719306..721341- (Nannochloropsis oceanica)
TGCGGCCCGAAACAACTATGTGCGTTTCCCCGAAAGCCAAGAGAGTAAGA
GGGCCGTGCGCTCCATCAGCAGCGGAGGCAGGCCAACTGCCTCTGGGACG
GCCAGCACGATAAATGCAAAAGGACTACCGCTCCCTCAAGCTTTTGGGCG
AAGGGGCCTTTGGGCAAGTATATCTGATGCGCCATGTTCCCACGCAGCAC
CTCGTGTGTGTCAAGGCCTGCAAGGAAGGCAAGGACGGCCCGGTGCCGTG
GCGAGAGGTCAATATAATGCAAAGTCTCTGCCACCCGTGCATTGTCCGGT
ACCGAGACAACTTTGGCGCGGGCGGTATGTTGTACATTGTGATGCAATAC
GCTGACAAGGGCGACTTGTCTTTCAAGCTCAAGGCCGCCCGTCGTTCTAC
TCCTCGTATGCACTTTCCCGAATCACAAATTTGGCATTGGTTCAGTCAGC
TTTGTCTGGCCTTGGAATATATGCACGCTCGCAAGATTATCCATCGCGAC
ATTAAGCCGCCCAACATCTTTTTGCTCGGCCCGGACGAACGATTGGTCTT
GGGGGACGTCGGCGTGGCCAAGAACCTCGACACCACTAAGGCATTTGCCC
ACACGGGTATTGGCACCCCCTATTATATGGCCCCGGAGATTTTTGCCAAC
AAAGGGCATAACACGAAGGCGGACGTGTGGTCGCTGGGAGTACTGCTGTA
TGAGCTTGCCTACCTCCGGCAAGCATTCGACGGCGAGTCCGTTCAAGAAA
TAGGCAACAAAGTAGTAAGTGGCCGATTCCATCCCGTGATGTCCGAGGAC
AATCATCGATACAGCAGTGCTCTGGGCGATGTATTGATTGAATTGTTAAA
CGTTAATCCGAATCGGCGCCCTCCAGTTGCAGATTTACTCAAGACACGAC
CGGTCATTACGCGGCGTGCACAGGAGTGGAGCAAGCAGGTGCTTTTAGCG
GCAGCTGACCCAGAAATTGAGAAAGTGCGGCCCGAAACAACTATGTGCGT
TTCCCCGAAAGCCAAGAGAGTAAGAGGGCCGTGCGCTCCATCAGCAGCGG
AGGCAGGCCAACTGCCTCTGGGACGGCCAGCACGATAAATGCAAAAGGAC
TACCGCTCCCTCAAGCTTTTGGGCGAAGGGGCCTTTGGGCAAGTATATCT
GATGCGCCATGTTCCCACGCAGCACCTCGTGTGTGTCAAGGCCTGCAAGG
AAGGCAAGGACGGCCCGGTGCCGTGGCGAGAGGTCAATATAATGCAAAGT
CTCTGCCACCCGTGCATTGTCCGGTACCGAGACAACTTTGGCGCGGGCGG
TATGTTGTACATTGTGATGCAATACGCTGACAAGGGCGACTTGTCTTTCA
AGCTCAAGGCCGCCCGTCGTTCTACTCCTCGTATGCACTTTCCCGAATCA
CAAATTTGGCATTGGTTCAGTCAGCTTTGTCTGGCCTTGGAATATATGCA
CGCTCGCAAGATTATCCATCGCGACATTAAGCCGCCCAACATCTTTTTGC
TCGGCCCGGACGAACGATTGGTCTTGGGGGACGTCGGCGTGGCCAAGAAC
CTCGACACCACTAAGGCATTTGCCCACACGGGTATTGGCACCCCCTATTA
TATGGCCCCGGAGATTTTTGCCAACAAAGGGCATAACACGAAGGCGGACG
TGTGGTCGCTGGGAGTACTGCTGTATGAGCTTGCCTACCTCCGGCAAGCA
TTCGACGGCGAGTCCGTTCAAGAAATAGGCAACAAAGTAGTAAGTGGCCG
ATTCCATCCCGTGATGTCCGAGGACAATCATCGATACAGCAGTGCTCTGG
GCGATGTATTGATTGAATTGTTAAACGTTAATCCGAATCGGCGCCCTCCA
GTTGCAGATTTACTCAAGACACGACCGGTCATTACGCGGCGTGCACAGGA
GTGGAGCAAGCAGGTGCTTTTAGCGGCAGCTGACCCAGAAATTGAGAAAG
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Synonyms
Publications