jgi.p|Nanoce1779_2|590527, mRNA_5844 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590527
Unique NamemRNA_5844
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1214
Alignment locationscaffold_11:718084..719297 +

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Properties
Property NameValue
TranscriptId590613
TrackFilteredModels2
ProteinId590527
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:718084..719297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590527gene_5844Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590527mRNA_5844-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5844CDS_5844Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5844 ID=mRNA_5844|Name=jgi.p|Nanoce1779_2|590527|organism=Nannochloropsis oceanica|type=mRNA|length=1214bp
ACAGCGGGACCATGCTAAGACTAGCTCCAGCAGCCATGGCGTGCCTTGCC
ACTTCCCTGGTTCTGCTTCAGTTGGTGTGCTCCTCCATGGCCTTCCTTCT
TCCCTCCCTCCCCTCCAACTCCCTCCTCCACCAGCAGCAGCTCCTCCAAC
ATCGGTCCAGCCGCCTGATCATGCCGGCGCGCAAAGGCGGTGGCGGTGGT
GGAGACTCTGGTGGGGGTTATGCGGAGAAACAGGAGTACATGCCTCCGAC
TGACCCTCGACTGGGCCCTCCTCCTGATCTTCCTTCTCTGCTCTTGCACA
ACCGCATAGTTTACTTGGGCATGGCCTTGGTACCTGCGGTGACAGAATTA
ATCATCGCGGAGCTGTTGTACTTGAATTATGAGAGTCAGGATCGCCCTAT
TTATATGTATATCAACAGCCCGGGGATCTCTACTCCGGATGGAAGGGCGA
TGGGTTTCGATACTGAGGCTTTCGCAATTGCTGACGTGATGTCTTATATC
CGCGCCCCGATCGCCACGGTGTGTGTAGGGCAGTGTTTTGGGTCTGCAGC
AATGCTGCTTGCGTGCGGGACGAAAGGGCAGAGGTACAGCTTGCCGAATG
GGAGTATTATGTTGCATCAGCCTAGGTCCTTGGCTAGGGGGCAGGCGTCT
GACATTGCTATCAAAGCGAGGGAGGTGATGAGGAACAGGAAGATCAATTC
GGAGATGCTCGCAAAGGCGTGTGGTAAGCCCTTGGATGTTATTATCAAGG
ATGCGAGTCGAAAGCGGTATTTTTCCCCCGAGGAGGCGTGTGAGTATGGA
TTGATCGACCAAGTATTGGAGAGCACGAACGACCTGCCCATGGGCCTGAT
TCCGCGGAGGCAGGGGGGGAACGAGCCAGAGAACGACTTAAACATGGCTG
ATGTAAGGGGGTACAGTAATCCGGCAGGGTATGGGGATAGCGCGGATGGT
GGTTTGCCGACAACGCCGTTTGGGTGAGAGTGAGGGGGAGGGGGAGGGTG
GACTTGAGAGTGTGGAAGTGAGTGAGGGTAGAAGATAGAGTAAGGATGGC
AGACAAGATGACGATAAAGAAGACGTGGAAGAGAGGGAAATACACGTACA
AAGGAAGAAAACAAGAAAAGGAAAAAGAGGAAAAAATAAACGCAGGCGGA
ATTACTCACTGTTGAAATGGTCTCTCGTCCTGACACGGAAGTTGTACGAA
CAACACGCATGCAC
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protein sequence of jgi.p|Nanoce1779_2|590527

>mRNA_5844-protein ID=mRNA_5844-protein|Name=jgi.p|Nanoce1779_2|590527|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MLRLAPAAMACLATSLVLLQLVCSSMAFLLPSLPSNSLLHQQQLLQHRSS
RLIMPARKGGGGGGDSGGGYAEKQEYMPPTDPRLGPPPDLPSLLLHNRIV
YLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISTPDGRAMGFD
TEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIM
LHQPRSLARGQASDIAIKAREVMRNRKINSEMLAKACGKPLDVIIKDASR
KRYFSPEEACEYGLIDQVLESTNDLPMGLIPRRQGGNEPENDLNMADVRG
YSNPAGYGDSADGGLPTTPFG*
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mRNA from alignment at scaffold_11:718084..719297+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5844 ID=mRNA_5844|Name=jgi.p|Nanoce1779_2|590527|organism=Nannochloropsis oceanica|type=mRNA|length=1214bp|location=Sequence derived from alignment at scaffold_11:718084..719297+ (Nannochloropsis oceanica)
ACAGCGGGACCATGCTAAGACTAGCTCCAGCAGCCATGGCGTGCCTTGCC
ACTTCCCTGGTTCTGCTTCAGTTGGTGTGCTCCTCCATGGCCTTCCTTCT
TCCCTCCCTCCCCTCCAACTCCCTCCTCCACCAGCAGCAGCTCCTCCAAC
ATCGGTCCAGCCGCCTGATCATGCCGGCGCGCAAAGGCGGTGGCGGTGGT
GGAGACTCTGGTGGGGGTTATGCGGAGAAACAGGAGTACATGCCTCCGAC
TGACCCTCGACTGGGCCCTCCTCCTGATCTTCCTTCTCTGCTCTTGCACA
ACCGCATAGTTTACTTGGGCATGGCCTTGGTACCTGCGGTGACAGAATTA
ATCATCGCGGAGCTGTTGTACTTGAATTATGAGAGTCAGGATCGCCCTAT
TTATATGTATATCAACAGCCCGGGGATCTCTACTCCGGATGGAAGGGCGA
TGGGTTTCGATACTGAGGCTTTCGCAATTGCTGACGTGATGTCTTATATC
CGCGCCCCGATCGCCACGGTGTGTGTAGGGCAGTGTTTTGGGTCTGCAGC
AATGCTGCTTGCGTGCGGGACGAAAGGGCAGAGGTACAGCTTGCCGAATG
GGAGTATTATGTTGCATCAGCCTAGGTCCTTGGCTAGGGGGCAGGCGTCT
GACATTGCTATCAAAGCGAGGGAGGTGATGAGGAACAGGAAGATCAATTC
GGAGATGCTCGCAAAGGCGTGTGGTAAGCCCTTGGATGTTATTATCAAGG
ATGCGAGTCGAAAGCGGTATTTTTCCCCCGAGGAGGCGTGTGAGTATGGA
TTGATCGACCAAGTATTGGAGAGCACGAACGACCTGCCCATGGGCCTGAT
TCCGCGGAGGCAGGGGGGGAACGAGCCAGAGAACGACTTAAACATGGCTG
ATGTAAGGGGGTACAGTAATCCGGCAGGGTATGGGGATAGCGCGGATGGT
GGTTTGCCGACAACGCCGTTTGGGTGAGAGTGAGGGGGAGGGGGAGGGTG
GACTTGAGAGTGTGGAAGTGAGTGAGGGTAGAAGATAGAGTAAGGATGGC
AGACAAGATGACGATAAAGAAGACGTGGAAGAGAGGGAAATACACGTACA
AAGGAAGAAAACAAGAAAAGGAAAAAGAGGAAAAAATAAACGCAGGCGGA
ATTACTCACTGTTGAAATGGTCTCTCGTCCTGACACGGAAGTTGTACGAA
CAACACGCATGCAC
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Coding sequence (CDS) from alignment at scaffold_11:718084..719297+

>mRNA_5844 ID=mRNA_5844|Name=jgi.p|Nanoce1779_2|590527|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_11:718084..719297+ (Nannochloropsis oceanica)
ATGCTAAGACTAGCTCCAGCAGCCATGGCGTGCCTTGCCACTTCCCTGGT
TCTGCTTCAGTTGGTGTGCTCCTCCATGGCCTTCCTTCTTCCCTCCCTCC
CCTCCAACTCCCTCCTCCACCAGCAGCAGCTCCTCCAACATCGGTCCAGC
CGCCTGATCATGCCGGCGCGCAAAGGCGGTGGCGGTGGTGGAGACTCTGG
TGGGGGTTATGCGGAGAAACAGGAGTACATGCCTCCGACTGACCCTCGAC
TGGGCCCTCCTCCTGATCTTCCTTCTCTGCTCTTGCACAACCGCATAGTT
TACTTGGGCATGGCCTTGGTACCTGCGGTGACAGAATTAATCATCGCGGA
GCTGTTGTACTTGAATTATGAGAGTCAGGATCGCCCTATTTATATGTATA
TCAACAGCCCGGGGATCTCTACTCCGGATGGAAGGGCGATGGGTTTCGAT
ACTGAGGCTTTCGCAATTGCTGACGTGATGTCTTATATCCGCGCCCCGAT
CGCCACGGTGTGTGTAGGGCAGTGTTTTGGGTCTGCAGCAATGCTGCTTG
CGTGCGGGACGAAAGGGCAGAGGTACAGCTTGCCGAATGGGAGTATTATG
TTGCATCAGCCTAGGTCCTTGGCTAGGGGGCAGGCGTCTGACATTGCTAT
CAAAGCGAGGGAGGTGATGAGGAACAGGAAGATCAATTCGGAGATGCTCG
CAAAGGCGTGTGGTAAGCCCTTGGATGTTATTATCAAGGATGCGAGTCGA
AAGCGGTATTTTTCCCCCGAGGAGGCGTGTGAGTATGGATTGATCGACCA
AGTATTGGAGAGCACGAACGACCTGCCCATGGGCCTGATTCCGCGGAGGC
AGGGGGGGAACGAGCCAGAGAACGACTTAAACATGGCTGATGTAAGGGGG
TACAGTAATCCGGCAGGGTATGGGGATAGCGCGGATGGTGGTTTGCCGAC
AACGCCGTTTGGGTGA
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Synonyms
Publications