jgi.p|Nanoce1779_2|590523, mRNA_5843 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590523
Unique NamemRNA_5843
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1195
Alignment locationscaffold_11:715808..717373 +

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Properties
Property NameValue
TranscriptId590609
TrackFilteredModels2
ProteinId590523
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:715808..717373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590523gene_5843Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590523mRNA_5843-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5843CDS_5843Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5843 ID=mRNA_5843|Name=jgi.p|Nanoce1779_2|590523|organism=Nannochloropsis oceanica|type=mRNA|length=1195bp
AGGTGAATTCAAGTAAGGCAAGTGCGCAGCTATTGCAGTCGTTTTGGGGG
GCACTCCAAGGCGTAAAAAAGGATCGTCGGGAGCGGCTTTCTCCTTCTAG
TTAGTTGCAGCAGCATGCAGCGCCACCACGACGTGGCTGGCACCAGTCTA
CCCTTACTTATTTTGTGCCTAGGACTGATGGCACAAAAGTGTTCCCATGC
CTTCCTGCAGACCCGCCTTCCGTTCACCCTATCCTGTGGCTCCTACGGTC
TACAAGCCTACACCCCTCCCTCCCTACATTCATCCTCCTCCCCTCTCCTC
CGCCGCCGTGCCCGTCTTTCCACCTCCCTCGCCGCCGGTCCGACCGAAGG
CGCCCCAACCGATATTCCCATCCCTGCTTCCAGCGACGATGTGGTCTTCG
AAGGACCGATTAAGACGGAGAACACCGAGCGATTCATTTGTGATATCTCG
ATCCCGGAGCCCATCGCGGCTGAATTGGAGGAGACGAACTTGGTGAAGAT
TGTAAAGCTGGCGTGTAAGGACGAGGAGGTTAATTGGTTGGCGTGGAAGT
GTCTCGGCTACCGCTACGTCCCCACGGAAGGCCGGTGGGACAACAGTAAC
GTCTTCCCCAAGTGGCGCGCCCGCTACCCCGAGCCGCCAGACCTAGTGGG
CGTCACCCGCATCTACGAGAAAGAGGTGGACGCCCCTGTAAAGCGTGCTA
ATACTGCCCTTGTTCGGTCTGTCCCCAAGATGTACAAACAATCATTGAAA
GAACTCCTGGCACCGTATGGCTTCAAAGGTTTTAAAATTGCGGAGCTCAC
CCCGAATCGAACACGCAGGGCCCAAGTATGTAACTGGTTATTGTACTTCA
AGAGGGAATTGTGGGGGGTGAGTCTGGAAAAACTGATTGAGAACAAGGAG
GCTGTCACGTCGGTGACGAGGGAGGGAGAGACCTCTGAGCAGTTGGCCAA
GAAAATGGTTTATTAGATGAGAGGATAAATTTGCTTCGAATTAGTAGTGA
GATGAGAGTTTTTCTAAGAAATGCATGATGACATATGTATGTTGACTTTA
TTTTGATGTGCGGGGATTAAGTGAACGGGGGTAGGATGATGGGACGAGTT
GGATTGCAGCAAGGCGGTGTGATTGATTTCGGGGAAACGAAACTTGAAAA
AGACGACAATAAATGTGACAAAAAGAATGAGCGCAACAACAACGA
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protein sequence of jgi.p|Nanoce1779_2|590523

>mRNA_5843-protein ID=mRNA_5843-protein|Name=jgi.p|Nanoce1779_2|590523|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MQRHHDVAGTSLPLLILCLGLMAQKCSHAFLQTRLPFTLSCGSYGLQAYT
PPSLHSSSSPLLRRRARLSTSLAAGPTEGAPTDIPIPASSDDVVFEGPIK
TENTERFICDISIPEPIAAELEETNLVKIVKLACKDEEVNWLAWKCLGYR
YVPTEGRWDNSNVFPKWRARYPEPPDLVGVTRIYEKEVDAPVKRANTALV
RSVPKMYKQSLKELLAPYGFKGFKIAELTPNRTRRAQVCNWLLYFKRELW
GVSLEKLIENKEAVTSVTREGETSEQLAKKMVY*
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mRNA from alignment at scaffold_11:715808..717373+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5843 ID=mRNA_5843|Name=jgi.p|Nanoce1779_2|590523|organism=Nannochloropsis oceanica|type=mRNA|length=1566bp|location=Sequence derived from alignment at scaffold_11:715808..717373+ (Nannochloropsis oceanica)
AGGTGAATTCAAGTAAGGCAAGTGCGCAGCTATTGCAGTCGTTTTGGGGG
GCACTCCAAGGCGTAAAAAAGGATCGTCGGGAGCGGCTTTCTCCTTCTAG
TTAGTTGCAGCAGCATGCAGCGCCACCACGACGTGGCTGGCACCAGTCTA
CCCTTACTTATTTTGTGCCTAGGACTGATGGCACAAAAGTGTTCCCATGC
CTTCCTGCAGACCCGCCTTCCGTTCACCCTATCCTGTGGCTCCTACGGTC
TACAAGCCTACACCCCTCCCTCCCTACATTCATCCTCCTCCCCTCTCCTC
CGCCGCCGTGCCCGTCTTTCCACCTCCCTCGCCGCCGGTCCGACCGAAGG
CGCCCCAACCGATATTCCCATCCCTGCTTCCAGCGACGATGTGGTCTTCG
AAGGACCGATTAAGACGGAGAACACCGAGCGATTCATTTGTGATATCTCG
ATCCCGGAGCCCATCGCGGCTGAATTGGAGGAGACGAACTTGGTGAAGAT
TGTAAAGCTGGCGTGTAAGGACGAGGAGGTTAATTGGTTGGCGTGGAAGT
GTCTCGGTGCGTTGGAGGGGGCGTGAGAGAATGAGGGAGGGAGAGATGGT
GGCTGGCCACTGCATTTAAGATATGGCCGAAGATCGGCCCGTAGTACCCA
TTCACTTTCTAAGCTCTTTATTTCTCAGGAATGCCCACTTATAGAAACCC
ACTCTTTATCAATCCCTTTTCCCTACGCCAGGCTACCGCTACGTCCCCAC
GGAAGGCCGGTGGGACAACAGTAACGTCTTCCCCAAGTGGCGCGCCCGCT
ACCCCGAGCCGCCAGACCTAGTGGGCGTCACCCGCATCTACGAGAAGTAA
GCTTTTAATGAGGGGTGTGAAGTAATGTGCTTTCGAATCAGATAAGATAT
TCGTATCGAGGAATGCGTGTATGGCGCTGTAGTCGAGTCTCTTTCCTCAA
TATCCTTTTTAGTTTCTCTTCACATCCCACTTCGTTCTCCCTGTCACTTA
CTCGCTTTCTCCCTTTCCTTGTATCCCCCTCATTGTAAACAGAGAGGTGG
ACGCCCCTGTAAAGCGTGCTAATACTGCCCTTGTTCGGTCTGTCCCCAAG
ATGTACAAACAATCATTGAAAGAACTCCTGGCACCGTATGGCTTCAAAGG
TTTTAAAATTGCGGAGCTCACCCCGAATCGAACACGCAGGGCCCAAGTAT
GTAACTGGTTATTGTACTTCAAGAGGGAATTGTGGGGGGTGAGTCTGGAA
AAACTGATTGAGAACAAGGAGGCTGTCACGTCGGTGACGAGGGAGGGAGA
GACCTCTGAGCAGTTGGCCAAGAAAATGGTTTATTAGATGAGAGGATAAA
TTTGCTTCGAATTAGTAGTGAGATGAGAGTTTTTCTAAGAAATGCATGAT
GACATATGTATGTTGACTTTATTTTGATGTGCGGGGATTAAGTGAACGGG
GGTAGGATGATGGGACGAGTTGGATTGCAGCAAGGCGGTGTGATTGATTT
CGGGGAAACGAAACTTGAAAAAGACGACAATAAATGTGACAAAAAGAATG
AGCGCAACAACAACGA
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Coding sequence (CDS) from alignment at scaffold_11:715808..717373+

>mRNA_5843 ID=mRNA_5843|Name=jgi.p|Nanoce1779_2|590523|organism=Nannochloropsis oceanica|type=CDS|length=2556bp|location=Sequence derived from alignment at scaffold_11:715808..717373+ (Nannochloropsis oceanica)
ATGCAGCGCCACCACGACGTGGCTGGCACCAGTCTACCCTTACTTATTTT
GTGCCTAGGACTGATGGCACAAAAGTGTTCCCATGCCTTCCTGCAGACCC
GCCTTCCGTTCACCCTATCCTGTGGCTCCTACGGTCTACAAGCCTACACC
CCTCCCTCCCTACATTCATCCTCCTCCCCTCTCCTCCGCCGCCGTGCCCG
TCTTTCCACCTCCCTCGCCGCCGGTCCGACCGAAGGCGCCCCAACCGATA
TTCCCATCCCTGCTTCCAGCGACGATGTGGTCTTCGAAGGACCGATTAAG
ACGGAGAACACCGAGCGATTCATTTGTGATATCTCGATCCCGGAGCCCAT
CGCGGCTGAATTGGAGGAGACGAACTTGGTGAAGATTGTAAAGCTGGCGT
GTAAGGACGAGGAGGTTAATTGGTTGGCGTGGAAGTGTCTCGGCTACCGC
TACGTCCCCACGGAAGGCCGGTGGGACAACAGTAACGTCTTCCCCAAGTG
GCGCGCCCGCTACCCCGAGCCGCCAGACCTAGTGGGCGTCACCCGCATCT
ACGAGAAAGAGGTGGACGCCCCTGTAAAGCGTGCTAATACTGCCCTTGTT
CGGTCTGTCCCCAAGATGTACAAACAATCATTGAAAGAACTCCTGGCACC
GTATGGCTTCAAAGGTTTTAAAATTGCGGAGCTCACCCCGAATCGAACAC
GCAGGGCCCAAGTATGTAACTGGTTATTGTACTTCAAGAGGGAATTGTGG
GGGGTGAGTCTGGAAAAACTGATTGAGAACAAGGAGGCTGTCACGTCGGT
GACGAGGGAGGGAGAGACCTCTGAGCAGTTGGCCAAGAAAATGGTTTATT
AGATGCAGCGCCACCACGACGTGGCTGGCACCAGTCTACCCTTACTTATT
TTGTGCCTAGGACTGATGGCACAAAAGTGTTCCCATGCCTTCCTGCAGAC
CCGCCTTCCGTTCACCCTATCCTGTGGCTCCTACGGTCTACAAGCCTACA
CCCCTCCCTCCCTACATTCATCCTCCTCCCCTCTCCTCCGCCGCCGTGCC
CGTCTTTCCACCTCCCTCGCCGCCGGTCCGACCGAAGGCGCCCCAACCGA
TATTCCCATCCCTGCTTCCAGCGACGATGTGGTCTTCGAAGGACCGATTA
AGACGGAGAACACCGAGCGATTCATTTGTGATATCTCGATCCCGGAGCCC
ATCGCGGCTGAATTGGAGGAGACGAACTTGGTGAAGATTGTAAAGCTGGC
GTGTAAGGACGAGGAGGTTAATTGGTTGGCGTGGAAGTGTCTCGGCTACC
GCTACGTCCCCACGGAAGGCCGGTGGGACAACAGTAACGTCTTCCCCAAG
TGGCGCGCCCGCTACCCCGAGCCGCCAGACCTAGTGGGCGTCACCCGCAT
CTACGAGAAAGAGGTGGACGCCCCTGTAAAGCGTGCTAATACTGCCCTTG
TTCGGTCTGTCCCCAAGATGTACAAACAATCATTGAAAGAACTCCTGGCA
CCGTATGGCTTCAAAGGTTTTAAAATTGCGGAGCTCACCCCGAATCGAAC
ACGCAGGGCCCAAGTATGTAACTGGTTATTGTACTTCAAGAGGGAATTGT
GGGGGGTGAGTCTGGAAAAACTGATTGAGAACAAGGAGGCTGTCACGTCG
GTGACGAGGGAGGGAGAGACCTCTGAGCAGTTGGCCAAGAAAATGGTTTA
TTAGATGCAGCGCCACCACGACGTGGCTGGCACCAGTCTACCCTTACTTA
TTTTGTGCCTAGGACTGATGGCACAAAAGTGTTCCCATGCCTTCCTGCAG
ACCCGCCTTCCGTTCACCCTATCCTGTGGCTCCTACGGTCTACAAGCCTA
CACCCCTCCCTCCCTACATTCATCCTCCTCCCCTCTCCTCCGCCGCCGTG
CCCGTCTTTCCACCTCCCTCGCCGCCGGTCCGACCGAAGGCGCCCCAACC
GATATTCCCATCCCTGCTTCCAGCGACGATGTGGTCTTCGAAGGACCGAT
TAAGACGGAGAACACCGAGCGATTCATTTGTGATATCTCGATCCCGGAGC
CCATCGCGGCTGAATTGGAGGAGACGAACTTGGTGAAGATTGTAAAGCTG
GCGTGTAAGGACGAGGAGGTTAATTGGTTGGCGTGGAAGTGTCTCGGCTA
CCGCTACGTCCCCACGGAAGGCCGGTGGGACAACAGTAACGTCTTCCCCA
AGTGGCGCGCCCGCTACCCCGAGCCGCCAGACCTAGTGGGCGTCACCCGC
ATCTACGAGAAAGAGGTGGACGCCCCTGTAAAGCGTGCTAATACTGCCCT
TGTTCGGTCTGTCCCCAAGATGTACAAACAATCATTGAAAGAACTCCTGG
CACCGTATGGCTTCAAAGGTTTTAAAATTGCGGAGCTCACCCCGAATCGA
ACACGCAGGGCCCAAGTATGTAACTGGTTATTGTACTTCAAGAGGGAATT
GTGGGGGGTGAGTCTGGAAAAACTGATTGAGAACAAGGAGGCTGTCACGT
CGGTGACGAGGGAGGGAGAGACCTCTGAGCAGTTGGCCAAGAAAATGGTT
TATTAG
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Synonyms
Publications