jgi.p|Nanoce1779_2|38881, mRNA_5840 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|38881
Unique Name	mRNA_5840
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1412
Alignment location	scaffold_11:704064..706409 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	38967
Track	FilteredModels2
ProteinId	38881

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:704064..706409 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|38881	gene_5840	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|38881	mRNA_5840-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5840	CDS_5840	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:704064..706409+
coding sequence from alignment at scaffold_11:704064..706409+

mRNA sequence

>mRNA_5840 ID=mRNA_5840|Name=jgi.p|Nanoce1779_2|38881|organism=Nannochloropsis oceanica|type=mRNA|length=1412bp
CATGTTGACCTCCCCCACTATGTCCAATCTTAGATATCGAGAAAGACTCC
GGAGCTTGCCCTTGGCATCGGGTGACATCGGATAAGTTGAGGAGAGGAGA
CTATTGCCCTTGACAATGACATATCTAGCTCTCACAAAGTTGCACGCATT
ATAGTCATCAGGTGCCCTCCTCTGAGTCTGCAATATCGGTCGCGGCAATA
GCGATAACGTTGGCGAGTGGAAGATTACCGTGACCCTCACATCCTCTGCC
TCACCTCCCCTGTCACACGACGGTCGCGCGCCTCATGGCCATGCTGCTTT
CGAAAAATAACCACACGCCCCATACGCACATGCCCCAGCCGCGTCCTCCT
ACTTACAGTATATAGTACATCCTTCTTACCATTCACACACAGGGACCTGG
AAGCTCCTCGTTGTCGGCCGTCTTGCTTGGGATATACACCGTTGTCGTCC
TTGCCGGGCTGCCTGGTGATTTAGGAGCAGTAATAGCAAGAGCAAGCTGT
ACCTGGCAGTGGGCGGGCTGGCAGCACTGAGCTATTTTATGCATTGGATT
TACACTCGGTCCGAGAAACGGACCTTGCGGCATGAGGCCCGAAATGCGAC
TTTGCTCGAGCAGATGTCGGTGAGGGACTACGTTGCGTCTTACTTGGAAG
ATCCCGCGATGAAGAGGCAGTTCATGCGGCAGGTGGAGCTCGTGCGAGAG
AGCTGGAACCGCCTCAAGCCCAACCGGCTCGAGCTGACGGCCCATGTGAT
GTACCAAAAGCTGCGTCAAGAGGACCCAAGCACCCAGGAAGTCTTCGACA
AGCGACTGGACTGGAGCAGCCAAGAACGTATCTTTACCGTTATGATCGGA
AACCTAATTAGCCGTCTAGGCGACCCTTCAGAAGAGGCATTTTTGGGGAT
GCTCGTTCGCCTGGGCAAGCGGCACCAGGCATTGGGCGTGAAGCCACAGC
AGTACAGCAGCATGCGACGTTCGATCTTGGCCAGTTTGGAGGAACTGTTG
GGGCATGAATGGAACAGTGAGTACAGCGATGCGTGGGCGAGTGTATTTAA
TTTCATTTCGCACGTGATGATTAAGGCGGCGCAGGAGGAGGGGCAGCGAA
TCGCCAAGGGAGGGAAGGAGGAAGAGGCAGGGAATGTTATTGGGCGGGAG
CTACCGGGAGTGCCTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTCAGG
GTGTCCATTCGCGGCGGCAGCGCGGATGCCAGTAAATAAGGTATTGAGTG
GGTTGCAGCTTGACGATGCGTTGAAAGGCAACAACGTTGAGACGGACGGG
CATTTTTTACACCAGGCGGTGGCGAGTTTGGAGGGAGGGGGAGGGGCTGC
TGGCAGTAGCAGTAGTGGTAGAAGTAGTTGAAGCAGTAAATGTCTTAGTT
AATTATTAATTG

protein sequence of jgi.p|Nanoce1779_2|38881

>mRNA_5840-protein ID=mRNA_5840-protein|Name=jgi.p|Nanoce1779_2|38881|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MHWIYTRSEKRTLRHEARNATLLEQMSVRDYVASYLEDPAMKRQFMRQVE
LVRESWNRLKPNRLELTAHVMYQKLRQEDPSTQEVFDKRLDWSSQERIFT
VMIGNLISRLGDPSEEAFLGMLVRLGKRHQALGVKPQQYSSMRRSILASL
EELLGHEWNSEYSDAWASVFNFISHVMIKAAQEEGQRIAKGGKEEEAGNV
IGRELPGVPGGGGGGGGGGSGCPFAAAARMPVNKVLSGLQLDDALKGNNV
ETDGHFLHQAVASLEGGGGAAGSSSSGRSS*

mRNA from alignment at scaffold_11:704064..706409+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5840 ID=mRNA_5840|Name=jgi.p|Nanoce1779_2|38881|organism=Nannochloropsis oceanica|type=mRNA|length=2346bp|location=Sequence derived from alignment at scaffold_11:704064..706409+ (Nannochloropsis oceanica)
CATGTTGACCTCCCCCACTATGTCCAATCTTAGATATCGAGAAAGACTCC
GGAGCTTGCCCTTGGCATCGGGTGACATCGGATAAGTTGAGGAGAGGAGA
CTATTGCCCTTGACAATGACATATCTAGCTCTCACAAAGTTGCACGCATT
ATAGTCATCAGGTGCCCTCCTCTGAGTCTGCAATATCGGTCGCGGCAATA
GCGATAACGTTGGCGAGTGGAAGATTACCGTGACCCTCACATCCTCTGCC
TCACCTCCCCTGTCACACGACGGTCGCGCGCCTCATGGCCATGCTGCTTT
CGAAAAATAACCACACGCCCCATACGCACATGCCCCAGCCGCGTCCTCCT
ACTTACAGTATATAGTACATCCTTCTTACCATTCACACACAGGGACCTGG
AAGCTCCTCGTTGTCGGCCGTCTTGCTTGGGATATACACCGTTGTCGTCC
TTGCCGGGCTGCCTGGTGATTTAGGTCCAACGCGAAGTATCACCACTACC
CCTAACTATCGCTCCACTGAATAGCAACAGGCCTTTATTCCTCTTCGTTC
CGTTTATTCCTCGTCTTGATCTCCCTCGTCCTTCCACCTTTCAAAATGGT
TGGCAGCAGGAGCAGTAATAGCAAGAGCAAGCTGTACCTGGCAGTGGGCG
GGCTGGCAGCACTGAGCTATTTTATGCATGTACGTGGCCCCAATAATTAT
CCTCCCATCCTTCGTATTCCCACCCATGCCATTTCATTTCATGATGACCC
ACTGACCCCCTTCCTTCCCCCCTTCCTTCCCCACTTTCTCCCTCCATTCC
CTCCCTCCATTCCACCAGTGGATTTACACTCGGTCCGAGAAACGGACCTT
GCGGCATGAGGCCCGAAATGCGACTTTGCTCGAGCAGATGTCGGTGAGGG
ACTACGTTGCGTCTTACTTGGAAGATCCCGCGATGAAGAGGCAGTTCATG
CGGCAGGTAGGCAAGGAGGGAGGGAGGGACGAAGGGGGAAAGGAGGGATG
AACGGTGGGAGGCATTTAGCTACAGCGTCAATCGCCGTTGTTGTAAGTGC
CCTTTATCGGCCTGTCACAGGATGAGGAAAGTTTTGCCTGAGAGAGGAAC
AGGGGAGGCAGGGAGGGCATGATGCCAGGTATATATAGACAAACATACAT
ATTTGCCACACACTTATTATTCGGTAATCTTCTGTGCACGGCGGCATATT
TGTGATTGATAGTATCACCCCTTTCTCTTTCTCATTTCCACCCACTCTCT
CTCGTGGACCAAACAGGTGGAGCTCGTGCGAGAGAGCTGGAACCGCCTCA
AGCCCAACCGGCTCGAGCTGACGGCCCATGTGATGTACCAAAAGCTGCGT
CAAGAGGACCCAAGCACCCAGGAAGTGTAAGTCATATACATATGATATAC
ATGTTTGTATAAATGTACACGTATATATACATATTATGTATGAAAATATT
CATATGGAATTACATACACACATTCGGTTTTTGAGTTTGAATATTCGTTG
CAGCCGGTCATGTGGAGGTGTTGATTATTTTTCTCCATCGGTTTTCCCCC
TCCACTCCCTTCTTCAGCTTCGACAAGCGACTGGACTGGAGCAGCCAAGA
ACGTATCTTTACCGTTATGATCGGAAACCTAATTAGCCGTCTAGGCGACC
CTTCAGAAGAGGCATTTTTGGGTACGGAGGGAGGGAGGGAGGGAGGGAGG
GGGAGGGGGGGGGAGGAAGAAAATTGTGACAGACGATGTCAGGCATATTG
AAATGCTGGTACTGTGACTGCTTCCAGTCACGCGTTACAATCTTCCTTGC
TCACTCCTTCCCCTCCATTCCCTCTTGCAGGGATGCTCGTTCGCCTGGGC
AAGCGGCACCAGGCATTGGGCGTGAAGCCACAGCAGTACAGCAGCATGCG
ACGTTCGATCTTGGCCAGTTTGGAGGAACTGTTGGGGCATGAATGGAACA
GTGAGTACAGCGATGCGTGGGCGAGTGTATTTAATTTCATTTCGCACGTG
ATGATTAAGGCGGCGCAGGAGGAGGGGCAGCGAATCGCCAAGGGAGGGAA
GGAGGAAGAGGCAGGGAATGTTATTGGGCGGGAGCTACCGGGAGTGCCTG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGTTCAGGGTGTCCATTCGCGGCG
GCAGCGCGGATGCCAGTAAATAAGGTATTGAGTGGGTTGCAGCTTGACGA
TGCGTTGAAAGGCAACAACGTTGAGACGGACGGGCATTTTTTACACCAGG
CGGTGGCGAGTTTGGAGGGAGGGGGAGGGGCTGCTGGCAGTAGCAGTAGT
GGTAGAAGTAGTTGAAGCAGTAAATGTCTTAGTTAATTATTAATTG

Coding sequence (CDS) from alignment at scaffold_11:704064..706409+

>mRNA_5840 ID=mRNA_5840|Name=jgi.p|Nanoce1779_2|38881|organism=Nannochloropsis oceanica|type=CDS|length=4215bp|location=Sequence derived from alignment at scaffold_11:704064..706409+ (Nannochloropsis oceanica)
ATGCATTGGATTTACACTCGGTCCGAGAAACGGACCTTGCGGCATGAGGC
CCGAAATGCGACTTTGCTCGAGCAGATGTCGGTGAGGGACTACGTTGCGT
CTTACTTGGAAGATCCCGCGATGAAGAGGCAGTTCATGCGGCAGGTGGAG
CTCGTGCGAGAGAGCTGGAACCGCCTCAAGCCCAACCGGCTCGAGCTGAC
GGCCCATGTGATGTACCAAAAGCTGCGTCAAGAGGACCCAAGCACCCAGG
AAGTCTTCGACAAGCGACTGGACTGGAGCAGCCAAGAACGTATCTTTACC
GTTATGATCGGAAACCTAATTAGCCGTCTAGGCGACCCTTCAGAAGAGGC
ATTTTTGGGGATGCTCGTTCGCCTGGGCAAGCGGCACCAGGCATTGGGCG
TGAAGCCACAGCAGTACAGCAGCATGCGACGTTCGATCTTGGCCAGTTTG
GAGGAACTGTTGGGGCATGAATGGAACAGTGAGTACAGCGATGCGTGGGC
GAGTGTATTTAATTTCATTTCGCACGTGATGATTAAGGCGGCGCAGGAGG
AGGGGCAGCGAATCGCCAAGGGAGGGAAGGAGGAAGAGGCAGGGAATGTT
ATTGGGCGGGAGCTACCGGGAGTGCCTGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGTTCAGGGTGTCCATTCGCGGCGGCAGCGCGGATGCCAGTAAATA
AGGTATTGAGTGGGTTGCAGCTTGACGATGCGTTGAAAGGCAACAACGTT
GAGACGGACGGGCATTTTTTACACCAGGCGGTGGCGAGTTTGGAGGGAGG
GGGAGGGGCTGCTGGCAGTAGCAGTAGTGGTAGAAGTAGTTGAATGCATT
GGATTTACACTCGGTCCGAGAAACGGACCTTGCGGCATGAGGCCCGAAAT
GCGACTTTGCTCGAGCAGATGTCGGTGAGGGACTACGTTGCGTCTTACTT
GGAAGATCCCGCGATGAAGAGGCAGTTCATGCGGCAGGTGGAGCTCGTGC
GAGAGAGCTGGAACCGCCTCAAGCCCAACCGGCTCGAGCTGACGGCCCAT
GTGATGTACCAAAAGCTGCGTCAAGAGGACCCAAGCACCCAGGAAGTCTT
CGACAAGCGACTGGACTGGAGCAGCCAAGAACGTATCTTTACCGTTATGA
TCGGAAACCTAATTAGCCGTCTAGGCGACCCTTCAGAAGAGGCATTTTTG
GGGATGCTCGTTCGCCTGGGCAAGCGGCACCAGGCATTGGGCGTGAAGCC
ACAGCAGTACAGCAGCATGCGACGTTCGATCTTGGCCAGTTTGGAGGAAC
TGTTGGGGCATGAATGGAACAGTGAGTACAGCGATGCGTGGGCGAGTGTA
TTTAATTTCATTTCGCACGTGATGATTAAGGCGGCGCAGGAGGAGGGGCA
GCGAATCGCCAAGGGAGGGAAGGAGGAAGAGGCAGGGAATGTTATTGGGC
GGGAGCTACCGGGAGTGCCTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGT
TCAGGGTGTCCATTCGCGGCGGCAGCGCGGATGCCAGTAAATAAGGTATT
GAGTGGGTTGCAGCTTGACGATGCGTTGAAAGGCAACAACGTTGAGACGG
ACGGGCATTTTTTACACCAGGCGGTGGCGAGTTTGGAGGGAGGGGGAGGG
GCTGCTGGCAGTAGCAGTAGTGGTAGAAGTAGTTGAATGCATTGGATTTA
CACTCGGTCCGAGAAACGGACCTTGCGGCATGAGGCCCGAAATGCGACTT
TGCTCGAGCAGATGTCGGTGAGGGACTACGTTGCGTCTTACTTGGAAGAT
CCCGCGATGAAGAGGCAGTTCATGCGGCAGGTGGAGCTCGTGCGAGAGAG
CTGGAACCGCCTCAAGCCCAACCGGCTCGAGCTGACGGCCCATGTGATGT
ACCAAAAGCTGCGTCAAGAGGACCCAAGCACCCAGGAAGTCTTCGACAAG
CGACTGGACTGGAGCAGCCAAGAACGTATCTTTACCGTTATGATCGGAAA
CCTAATTAGCCGTCTAGGCGACCCTTCAGAAGAGGCATTTTTGGGGATGC
TCGTTCGCCTGGGCAAGCGGCACCAGGCATTGGGCGTGAAGCCACAGCAG
TACAGCAGCATGCGACGTTCGATCTTGGCCAGTTTGGAGGAACTGTTGGG
GCATGAATGGAACAGTGAGTACAGCGATGCGTGGGCGAGTGTATTTAATT
TCATTTCGCACGTGATGATTAAGGCGGCGCAGGAGGAGGGGCAGCGAATC
GCCAAGGGAGGGAAGGAGGAAGAGGCAGGGAATGTTATTGGGCGGGAGCT
ACCGGGAGTGCCTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTCAGGGT
GTCCATTCGCGGCGGCAGCGCGGATGCCAGTAAATAAGGTATTGAGTGGG
TTGCAGCTTGACGATGCGTTGAAAGGCAACAACGTTGAGACGGACGGGCA
TTTTTTACACCAGGCGGTGGCGAGTTTGGAGGGAGGGGGAGGGGCTGCTG
GCAGTAGCAGTAGTGGTAGAAGTAGTTGAATGCATTGGATTTACACTCGG
TCCGAGAAACGGACCTTGCGGCATGAGGCCCGAAATGCGACTTTGCTCGA
GCAGATGTCGGTGAGGGACTACGTTGCGTCTTACTTGGAAGATCCCGCGA
TGAAGAGGCAGTTCATGCGGCAGGTGGAGCTCGTGCGAGAGAGCTGGAAC
CGCCTCAAGCCCAACCGGCTCGAGCTGACGGCCCATGTGATGTACCAAAA
GCTGCGTCAAGAGGACCCAAGCACCCAGGAAGTCTTCGACAAGCGACTGG
ACTGGAGCAGCCAAGAACGTATCTTTACCGTTATGATCGGAAACCTAATT
AGCCGTCTAGGCGACCCTTCAGAAGAGGCATTTTTGGGGATGCTCGTTCG
CCTGGGCAAGCGGCACCAGGCATTGGGCGTGAAGCCACAGCAGTACAGCA
GCATGCGACGTTCGATCTTGGCCAGTTTGGAGGAACTGTTGGGGCATGAA
TGGAACAGTGAGTACAGCGATGCGTGGGCGAGTGTATTTAATTTCATTTC
GCACGTGATGATTAAGGCGGCGCAGGAGGAGGGGCAGCGAATCGCCAAGG
GAGGGAAGGAGGAAGAGGCAGGGAATGTTATTGGGCGGGAGCTACCGGGA
GTGCCTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTCAGGGTGTCCATT
CGCGGCGGCAGCGCGGATGCCAGTAAATAAGGTATTGAGTGGGTTGCAGC
TTGACGATGCGTTGAAAGGCAACAACGTTGAGACGGACGGGCATTTTTTA
CACCAGGCGGTGGCGAGTTTGGAGGGAGGGGGAGGGGCTGCTGGCAGTAG
CAGTAGTGGTAGAAGTAGTTGAATGCATTGGATTTACACTCGGTCCGAGA
AACGGACCTTGCGGCATGAGGCCCGAAATGCGACTTTGCTCGAGCAGATG
TCGGTGAGGGACTACGTTGCGTCTTACTTGGAAGATCCCGCGATGAAGAG
GCAGTTCATGCGGCAGGTGGAGCTCGTGCGAGAGAGCTGGAACCGCCTCA
AGCCCAACCGGCTCGAGCTGACGGCCCATGTGATGTACCAAAAGCTGCGT
CAAGAGGACCCAAGCACCCAGGAAGTCTTCGACAAGCGACTGGACTGGAG
CAGCCAAGAACGTATCTTTACCGTTATGATCGGAAACCTAATTAGCCGTC
TAGGCGACCCTTCAGAAGAGGCATTTTTGGGGATGCTCGTTCGCCTGGGC
AAGCGGCACCAGGCATTGGGCGTGAAGCCACAGCAGTACAGCAGCATGCG
ACGTTCGATCTTGGCCAGTTTGGAGGAACTGTTGGGGCATGAATGGAACA
GTGAGTACAGCGATGCGTGGGCGAGTGTATTTAATTTCATTTCGCACGTG
ATGATTAAGGCGGCGCAGGAGGAGGGGCAGCGAATCGCCAAGGGAGGGAA
GGAGGAAGAGGCAGGGAATGTTATTGGGCGGGAGCTACCGGGAGTGCCTG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGTTCAGGGTGTCCATTCGCGGCG
GCAGCGCGGATGCCAGTAAATAAGGTATTGAGTGGGTTGCAGCTTGACGA
TGCGTTGAAAGGCAACAACGTTGAGACGGACGGGCATTTTTTACACCAGG
CGGTGGCGAGTTTGGAGGGAGGGGGAGGGGCTGCTGGCAGTAGCAGTAGT
GGTAGAAGTAGTTGA

Synonyms

Publications