jgi.p|Nanoce1779_2|528569, mRNA_5839 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|528569
Unique NamemRNA_5839
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1389
Alignment locationscaffold_11:702317..703705 -

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Properties
Property NameValue
TranscriptId528655
TrackFilteredModels2
ProteinId528569
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:702317..703705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528569gene_5839Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5839CDS_5839Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528569mRNA_5839-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5839 ID=mRNA_5839|Name=jgi.p|Nanoce1779_2|528569|organism=Nannochloropsis oceanica|type=mRNA|length=1389bp
ATGAACCACTTGTTCTACCGCGAGACCCACGGCGCCGGTAATTTAGGTCC
TCACCATCGCTTCGCGCGCGCCGCATTAAACGGAGTCAATCTCCACCCCA
CGTCCCTAGCGGGAGCCGTGGGAGGTTTTCAGTCAGCCCTCTTCAGTGCG
AGCTTTAGCAGGGATGGACAAATGGTCTTCACGGCCTGTCAAGACGGCAC
CATCAACCTGTACGACCTCGACCAGTTGTTATATGCCCAAGCACAGCACC
AACATCGCCTTTCCCTGCCCATGGCGGGCGGTCGGAGCGCACCACGTATG
TACTCGGGTCTTTTCTCGTCTATTTCCTCCTCCTCGTCCTCCTCCTCGTC
CTCCGCCCATCCTGTGATTCGTCCGAAGAAACGCATCCGTTGTCAAGACA
TAGGCTGGTCTATTGTCGGTTCTGCTTTCAGCCCCGACGCCAAATGGATT
GCTTATTCGTCTTGGTCGCGCTATCTTCACCTTACCAACACCTTTGGACA
GCACGAGTTGCATGAGCGGGTAAGTGTCTCCCCTCATCGGAGCGCTAATT
TCTGTTTGTTTTCCCTGGCTTTCTCCGCTGATGGGGCCCAGGTGATTGGG
GGCGGAAACGATGGATGCCTTCACCTGATCCAGTTGGAGCGCAAGGCTGT
TTCTCGTATCGAGCAAGCGCATTATGATGATGTAAATACCGTGTGTTTTG
TTGACCCTGTCCATTCTCCCTCCCTCGTGCTGTCGGGAGCCGACGACGGG
TTGATAAAATTGTGGGATTTGAGGACGGAGGGCGCGGTGGGGTTACTAGC
AGGTCATACCAGTGGGATCACCAACGTATGTTCTAAAGATGGAGGGGGAG
GGGGGGGAGGAGGGAGGGGGGGAGGGAGGCTGGTGGTGAGCAATGGGAAG
GACCAGACAAGCAAATTGTGGGACTTGAGGAAGATGGTCGAGGCGGGGAG
GGGGGCGGAGGAGAGGTATGCGGTGGATGTAGATGTGGACTATAGGTTTG
ACATCGCCGAGCAGCCGTTGGGGGGGAGGAGAGGGAGGCGGCAGAGGCAT
CCCGTGAGTGACCATTCAATCAAAACGTGGTGGGGGCATCGGGTGACGCG
GACGTTGATCCAGGCGACGTTTTCGTCGGAAGAGCTTACGGGGGGTAGGT
TTGTAGTGACCGGCAGTGCCGGAGGGGGAGTATTTGTATACGATATAATG
GGAGAGGGAGCGGGGGAGGGAGAAAGGGAGAGAGAGGGAGGGTGCGCTCT
GGCTAGGTTGGATTTCCATAAGGATTGTGTGCGAACGGTGGCGTGTGCGC
CGCATCATGACTTGATGATCTCAGCGGGATGGGACGGGAGACTGGGATTA
TGGTGCTGGCAGGGGCGAGAGGATGAGGAGGAGGCGTGA
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protein sequence of jgi.p|Nanoce1779_2|528569

>mRNA_5839-protein ID=mRNA_5839-protein|Name=jgi.p|Nanoce1779_2|528569|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MNHLFYRETHGAGNLGPHHRFARAALNGVNLHPTSLAGAVGGFQSALFSA
SFSRDGQMVFTACQDGTINLYDLDQLLYAQAQHQHRLSLPMAGGRSAPRM
YSGLFSSISSSSSSSSSSAHPVIRPKKRIRCQDIGWSIVGSAFSPDAKWI
AYSSWSRYLHLTNTFGQHELHERVSVSPHRSANFCLFSLAFSADGAQVIG
GGNDGCLHLIQLERKAVSRIEQAHYDDVNTVCFVDPVHSPSLVLSGADDG
LIKLWDLRTEGAVGLLAGHTSGITNVCSKDGGGGGGGGRGGGRLVVSNGK
DQTSKLWDLRKMVEAGRGAEERYAVDVDVDYRFDIAEQPLGGRRGRRQRH
PVSDHSIKTWWGHRVTRTLIQATFSSEELTGGRFVVTGSAGGGVFVYDIM
GEGAGEGEREREGGCALARLDFHKDCVRTVACAPHHDLMISAGWDGRLGL
WCWQGREDEEEA*
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mRNA from alignment at scaffold_11:702317..703705-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5839 ID=mRNA_5839|Name=jgi.p|Nanoce1779_2|528569|organism=Nannochloropsis oceanica|type=mRNA|length=1389bp|location=Sequence derived from alignment at scaffold_11:702317..703705- (Nannochloropsis oceanica)
ATGAACCACTTGTTCTACCGCGAGACCCACGGCGCCGGTAATTTAGGTCC
TCACCATCGCTTCGCGCGCGCCGCATTAAACGGAGTCAATCTCCACCCCA
CGTCCCTAGCGGGAGCCGTGGGAGGTTTTCAGTCAGCCCTCTTCAGTGCG
AGCTTTAGCAGGGATGGACAAATGGTCTTCACGGCCTGTCAAGACGGCAC
CATCAACCTGTACGACCTCGACCAGTTGTTATATGCCCAAGCACAGCACC
AACATCGCCTTTCCCTGCCCATGGCGGGCGGTCGGAGCGCACCACGTATG
TACTCGGGTCTTTTCTCGTCTATTTCCTCCTCCTCGTCCTCCTCCTCGTC
CTCCGCCCATCCTGTGATTCGTCCGAAGAAACGCATCCGTTGTCAAGACA
TAGGCTGGTCTATTGTCGGTTCTGCTTTCAGCCCCGACGCCAAATGGATT
GCTTATTCGTCTTGGTCGCGCTATCTTCACCTTACCAACACCTTTGGACA
GCACGAGTTGCATGAGCGGGTAAGTGTCTCCCCTCATCGGAGCGCTAATT
TCTGTTTGTTTTCCCTGGCTTTCTCCGCTGATGGGGCCCAGGTGATTGGG
GGCGGAAACGATGGATGCCTTCACCTGATCCAGTTGGAGCGCAAGGCTGT
TTCTCGTATCGAGCAAGCGCATTATGATGATGTAAATACCGTGTGTTTTG
TTGACCCTGTCCATTCTCCCTCCCTCGTGCTGTCGGGAGCCGACGACGGG
TTGATAAAATTGTGGGATTTGAGGACGGAGGGCGCGGTGGGGTTACTAGC
AGGTCATACCAGTGGGATCACCAACGTATGTTCTAAAGATGGAGGGGGAG
GGGGGGGAGGAGGGAGGGGGGGAGGGAGGCTGGTGGTGAGCAATGGGAAG
GACCAGACAAGCAAATTGTGGGACTTGAGGAAGATGGTCGAGGCGGGGAG
GGGGGCGGAGGAGAGGTATGCGGTGGATGTAGATGTGGACTATAGGTTTG
ACATCGCCGAGCAGCCGTTGGGGGGGAGGAGAGGGAGGCGGCAGAGGCAT
CCCGTGAGTGACCATTCAATCAAAACGTGGTGGGGGCATCGGGTGACGCG
GACGTTGATCCAGGCGACGTTTTCGTCGGAAGAGCTTACGGGGGGTAGGT
TTGTAGTGACCGGCAGTGCCGGAGGGGGAGTATTTGTATACGATATAATG
GGAGAGGGAGCGGGGGAGGGAGAAAGGGAGAGAGAGGGAGGGTGCGCTCT
GGCTAGGTTGGATTTCCATAAGGATTGTGTGCGAACGGTGGCGTGTGCGC
CGCATCATGACTTGATGATCTCAGCGGGATGGGACGGGAGACTGGGATTA
TGGTGCTGGCAGGGGCGAGAGGATGAGGAGGAGGCGTGA
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Coding sequence (CDS) from alignment at scaffold_11:702317..703705-

>mRNA_5839 ID=mRNA_5839|Name=jgi.p|Nanoce1779_2|528569|organism=Nannochloropsis oceanica|type=CDS|length=1389bp|location=Sequence derived from alignment at scaffold_11:702317..703705- (Nannochloropsis oceanica)
ATGAACCACTTGTTCTACCGCGAGACCCACGGCGCCGGTAATTTAGGTCC
TCACCATCGCTTCGCGCGCGCCGCATTAAACGGAGTCAATCTCCACCCCA
CGTCCCTAGCGGGAGCCGTGGGAGGTTTTCAGTCAGCCCTCTTCAGTGCG
AGCTTTAGCAGGGATGGACAAATGGTCTTCACGGCCTGTCAAGACGGCAC
CATCAACCTGTACGACCTCGACCAGTTGTTATATGCCCAAGCACAGCACC
AACATCGCCTTTCCCTGCCCATGGCGGGCGGTCGGAGCGCACCACGTATG
TACTCGGGTCTTTTCTCGTCTATTTCCTCCTCCTCGTCCTCCTCCTCGTC
CTCCGCCCATCCTGTGATTCGTCCGAAGAAACGCATCCGTTGTCAAGACA
TAGGCTGGTCTATTGTCGGTTCTGCTTTCAGCCCCGACGCCAAATGGATT
GCTTATTCGTCTTGGTCGCGCTATCTTCACCTTACCAACACCTTTGGACA
GCACGAGTTGCATGAGCGGGTAAGTGTCTCCCCTCATCGGAGCGCTAATT
TCTGTTTGTTTTCCCTGGCTTTCTCCGCTGATGGGGCCCAGGTGATTGGG
GGCGGAAACGATGGATGCCTTCACCTGATCCAGTTGGAGCGCAAGGCTGT
TTCTCGTATCGAGCAAGCGCATTATGATGATGTAAATACCGTGTGTTTTG
TTGACCCTGTCCATTCTCCCTCCCTCGTGCTGTCGGGAGCCGACGACGGG
TTGATAAAATTGTGGGATTTGAGGACGGAGGGCGCGGTGGGGTTACTAGC
AGGTCATACCAGTGGGATCACCAACGTATGTTCTAAAGATGGAGGGGGAG
GGGGGGGAGGAGGGAGGGGGGGAGGGAGGCTGGTGGTGAGCAATGGGAAG
GACCAGACAAGCAAATTGTGGGACTTGAGGAAGATGGTCGAGGCGGGGAG
GGGGGCGGAGGAGAGGTATGCGGTGGATGTAGATGTGGACTATAGGTTTG
ACATCGCCGAGCAGCCGTTGGGGGGGAGGAGAGGGAGGCGGCAGAGGCAT
CCCGTGAGTGACCATTCAATCAAAACGTGGTGGGGGCATCGGGTGACGCG
GACGTTGATCCAGGCGACGTTTTCGTCGGAAGAGCTTACGGGGGGTAGGT
TTGTAGTGACCGGCAGTGCCGGAGGGGGAGTATTTGTATACGATATAATG
GGAGAGGGAGCGGGGGAGGGAGAAAGGGAGAGAGAGGGAGGGTGCGCTCT
GGCTAGGTTGGATTTCCATAAGGATTGTGTGCGAACGGTGGCGTGTGCGC
CGCATCATGACTTGATGATCTCAGCGGGATGGGACGGGAGACTGGGATTA
TGGTGCTGGCAGGGGCGAGAGGATGAGGAGGAGGCGTGA
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Synonyms
Publications