jgi.p|Nanoce1779_2|590496, mRNA_5838 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590496
Unique Name	mRNA_5838
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2347
Alignment location	scaffold_11:699625..701971 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590582
Track	FilteredModels2
ProteinId	590496

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:699625..701971 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590496	gene_5838	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590496	mRNA_5838-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5838	CDS_5838	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:699625..701971+
coding sequence from alignment at scaffold_11:699625..701971+

mRNA sequence

>mRNA_5838 ID=mRNA_5838|Name=jgi.p|Nanoce1779_2|590496|organism=Nannochloropsis oceanica|type=mRNA|length=2347bp
CCTTATATCGTTGGCGGAACGTTTCGTGTTGATACGCTGTTTCTTGGTCT
TAGTGACCGGGGCTTCGCGCGCCATGCTGGCTGTGTGAGGAGTGGAGGGT
TGAGAGAGGAATATAAGGACTGCACTTGGATGTGGGAGGGAAAATCTTAC
AGGGCATTGCATGACGAGAAAGTTCGTAAAGACAGCGCTTTCTCGTGCAT
GCAAGTGGTGGTAAAGTATAGCGCAAAGGCATGGTAGACGGCATGCCTGC
CGCACGATGGCTGGTGCTGATGACGATCATTGGGAAGAGAATGATATCTC
AAAAGTGCACGCATGGACCGCCAATCCACTGGCACCAGGGTATGATATAA
GAATTGTACTTTGTATGCCTTCATTTTGAGGGTCTACAGGCTCTAATAGC
GGAATAGCTTGATGGAGCAGGGAAGAACGTTATGGGGACAGGAGGTTATC
GTGGATTTCCCCCGGTTGTTCTTACCCCAGTCCTAACTGCAGGTCCCCTG
ACCTTTCTCATGACCCTTCCGTCGACCCAATTTAACATTACAGAGAGCCA
TGAAGGTGCAGACGGTATTGGCGCTGGCAGTAGCGCTCATGGCAGCCCAC
AGAGCCCTGGGTTTCGTCCCATGTCCAAGCCCGGCGTTGAGGTAAGGCTT
GAAGCGAATGATCCTTTAGAGGCTAGTGTGTCTAAGCACGCAGGCAGAAG
ATTGCGGTATGTGTCGGACAGTTGTACATCTTCGGCAGGTGGTGGGCGTG
TGCGTCGACTTAATGCATATCCTGGTTCTTGCAATCAATCCCTGAGAAAG
GCTGTCGCATTGATGCATTAAGCTCTGCCTCCCCTATCCCACTGTAGCTA
GGTGGAACCCGTGGCTACACGTCCACCACACGTACTGACGAACAAAATAT
AAACTCATGCTTGTTATTGTCCCAGAAACTATGAGTGCCAGCCTTGAACC
TTTGGAGCATTCCTCCCTGCATCCCCGGCTTGCATCTCGGGAAGCACCCT
GCCTTCTACGTTCTGACCTTATTTCCACACCCACATCTCACAAACGCACG
GCAAACATTCCTCGTTCAACCTCCCTACACTTGAATACCAGGCATGCCAC
CCGTATCACCACTACAACCGCTTCACCCTCTTCCTTCCCTACCCTCGCCG
CCACCACCCCTTCTACCCGCACCCGCTCCCGCCTCTACATGCTGCATAAG
AGCGCCTTGGCCGGCAAGCCTCCCTCAGAGCTCACTGTGGCCGTCGCTGG
TGCTACGGGATATATTGGCAAGGCCGTCGTACGCGAGTGTATTCGACGGG
GTTACAAAACCAAGGCGTACGTGAGGGAGGAGAGTGTGGGTAGGGCCAAG
ACATTGGATTACCTTAAGGGAGCTGAAGTCATAGGTGGCTCCCTCGATGA
TACCTCAGAAGTCCAAGCCAAGCTTTTTGGGGGCTCCGAGCCCGTCGATG
TGGTGATATCATGCATCGCAAGTCGAAGTGGCGCGCCGGCCGATGCGTGG
AAGGTTGATCATGCGGCCAACGTACATTTGCTCGATGCGGCTCTGGGGGC
GAAAGAGCCTTCGAAGCACTTCATCATGCTCTCTGCTTATTGTGTAAAAA
CTCCCAGGCTGGTGTTTCAACATGCCAAACTCAAGTTTGAGAATTATTTA
CGGGGGAAAGGAGAGGAGATAACGTCCACAATTATCCGGCCCACGGCGTT
CTTTAAGAGCGTGAGTGGTCAGTTGGAAATCGTTCAGAAAGGCTACCCGT
ATGTGATGTTCGGTGATGGCGAGATTTGTAGCTGTAACCCAATCTCGGAG
GCGGATCTGGCGGAGTATATTGTAAAGAGTATCGACGACGCCACCATGCA
CCACCAGGTGTTGGATGTGGGGGGTCCGGATGAAGGACTAACACCCAAGA
GGCAGGCGGAGATATTGTTCGAGGTGGTGGGGAAGGAACCGAGCTTTATC
AAGGTACCGATTGGCTTGTTCGATGCGATCATTGGAACCATCGATTTCTT
CGCGAAGTTTCTGGATGGGGCCAAGGACGCGGCGGAGCTGGCGAGGATTG
GGAAGTACTATGCAGTGGAGGACATGCTGACAACCAAGCCGAGTGAAAAA
TACGGGAAAATTACATTGAGGGAGCACTTTGCAAGGATAGCGAAGGAGGG
GAATGAGTATGACCCGTACACAACCATGTTCTCGAGTGCGAAGCAAAAGA
CGGAGGCGTAGGGCTTGGATAGGAAGGGGGGAGAGTGGGAGGGAAGAAAA
TTGGGGAAGTGAAGGTGAAGAGAGTGAGGAGAGTTGAGGCGAGAGGTGGG
TGCATTAAATTCATTCAAAGACAAGACGGCAGTAATCGGCGGATCAA

protein sequence of jgi.p|Nanoce1779_2|590496

>mRNA_5838-protein ID=mRNA_5838-protein|Name=jgi.p|Nanoce1779_2|590496|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MLVIVPETMSASLEPLEHSSLHPRLASREAPCLLRSDLISTPTSHKRTAN
IPRSTSLHLNTRHATRITTTTASPSSFPTLAATTPSTRTRSRLYMLHKSA
LAGKPPSELTVAVAGATGYIGKAVVRECIRRGYKTKAYVREESVGRAKTL
DYLKGAEVIGGSLDDTSEVQAKLFGGSEPVDVVISCIASRSGAPADAWKV
DHAANVHLLDAALGAKEPSKHFIMLSAYCVKTPRLVFQHAKLKFENYLRG
KGEEITSTIIRPTAFFKSVSGQLEIVQKGYPYVMFGDGEICSCNPISEAD
LAEYIVKSIDDATMHHQVLDVGGPDEGLTPKRQAEILFEVVGKEPSFIKV
PIGLFDAIIGTIDFFAKFLDGAKDAAELARIGKYYAVEDMLTTKPSEKYG
KITLREHFARIAKEGNEYDPYTTMFSSAKQKTEA*

mRNA from alignment at scaffold_11:699625..701971+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5838 ID=mRNA_5838|Name=jgi.p|Nanoce1779_2|590496|organism=Nannochloropsis oceanica|type=mRNA|length=2347bp|location=Sequence derived from alignment at scaffold_11:699625..701971+ (Nannochloropsis oceanica)
CCTTATATCGTTGGCGGAACGTTTCGTGTTGATACGCTGTTTCTTGGTCT
TAGTGACCGGGGCTTCGCGCGCCATGCTGGCTGTGTGAGGAGTGGAGGGT
TGAGAGAGGAATATAAGGACTGCACTTGGATGTGGGAGGGAAAATCTTAC
AGGGCATTGCATGACGAGAAAGTTCGTAAAGACAGCGCTTTCTCGTGCAT
GCAAGTGGTGGTAAAGTATAGCGCAAAGGCATGGTAGACGGCATGCCTGC
CGCACGATGGCTGGTGCTGATGACGATCATTGGGAAGAGAATGATATCTC
AAAAGTGCACGCATGGACCGCCAATCCACTGGCACCAGGGTATGATATAA
GAATTGTACTTTGTATGCCTTCATTTTGAGGGTCTACAGGCTCTAATAGC
GGAATAGCTTGATGGAGCAGGGAAGAACGTTATGGGGACAGGAGGTTATC
GTGGATTTCCCCCGGTTGTTCTTACCCCAGTCCTAACTGCAGGTCCCCTG
ACCTTTCTCATGACCCTTCCGTCGACCCAATTTAACATTACAGAGAGCCA
TGAAGGTGCAGACGGTATTGGCGCTGGCAGTAGCGCTCATGGCAGCCCAC
AGAGCCCTGGGTTTCGTCCCATGTCCAAGCCCGGCGTTGAGGTAAGGCTT
GAAGCGAATGATCCTTTAGAGGCTAGTGTGTCTAAGCACGCAGGCAGAAG
ATTGCGGTATGTGTCGGACAGTTGTACATCTTCGGCAGGTGGTGGGCGTG
TGCGTCGACTTAATGCATATCCTGGTTCTTGCAATCAATCCCTGAGAAAG
GCTGTCGCATTGATGCATTAAGCTCTGCCTCCCCTATCCCACTGTAGCTA
GGTGGAACCCGTGGCTACACGTCCACCACACGTACTGACGAACAAAATAT
AAACTCATGCTTGTTATTGTCCCAGAAACTATGAGTGCCAGCCTTGAACC
TTTGGAGCATTCCTCCCTGCATCCCCGGCTTGCATCTCGGGAAGCACCCT
GCCTTCTACGTTCTGACCTTATTTCCACACCCACATCTCACAAACGCACG
GCAAACATTCCTCGTTCAACCTCCCTACACTTGAATACCAGGCATGCCAC
CCGTATCACCACTACAACCGCTTCACCCTCTTCCTTCCCTACCCTCGCCG
CCACCACCCCTTCTACCCGCACCCGCTCCCGCCTCTACATGCTGCATAAG
AGCGCCTTGGCCGGCAAGCCTCCCTCAGAGCTCACTGTGGCCGTCGCTGG
TGCTACGGGATATATTGGCAAGGCCGTCGTACGCGAGTGTATTCGACGGG
GTTACAAAACCAAGGCGTACGTGAGGGAGGAGAGTGTGGGTAGGGCCAAG
ACATTGGATTACCTTAAGGGAGCTGAAGTCATAGGTGGCTCCCTCGATGA
TACCTCAGAAGTCCAAGCCAAGCTTTTTGGGGGCTCCGAGCCCGTCGATG
TGGTGATATCATGCATCGCAAGTCGAAGTGGCGCGCCGGCCGATGCGTGG
AAGGTTGATCATGCGGCCAACGTACATTTGCTCGATGCGGCTCTGGGGGC
GAAAGAGCCTTCGAAGCACTTCATCATGCTCTCTGCTTATTGTGTAAAAA
CTCCCAGGCTGGTGTTTCAACATGCCAAACTCAAGTTTGAGAATTATTTA
CGGGGGAAAGGAGAGGAGATAACGTCCACAATTATCCGGCCCACGGCGTT
CTTTAAGAGCGTGAGTGGTCAGTTGGAAATCGTTCAGAAAGGCTACCCGT
ATGTGATGTTCGGTGATGGCGAGATTTGTAGCTGTAACCCAATCTCGGAG
GCGGATCTGGCGGAGTATATTGTAAAGAGTATCGACGACGCCACCATGCA
CCACCAGGTGTTGGATGTGGGGGGTCCGGATGAAGGACTAACACCCAAGA
GGCAGGCGGAGATATTGTTCGAGGTGGTGGGGAAGGAACCGAGCTTTATC
AAGGTACCGATTGGCTTGTTCGATGCGATCATTGGAACCATCGATTTCTT
CGCGAAGTTTCTGGATGGGGCCAAGGACGCGGCGGAGCTGGCGAGGATTG
GGAAGTACTATGCAGTGGAGGACATGCTGACAACCAAGCCGAGTGAAAAA
TACGGGAAAATTACATTGAGGGAGCACTTTGCAAGGATAGCGAAGGAGGG
GAATGAGTATGACCCGTACACAACCATGTTCTCGAGTGCGAAGCAAAAGA
CGGAGGCGTAGGGCTTGGATAGGAAGGGGGGAGAGTGGGAGGGAAGAAAA
TTGGGGAAGTGAAGGTGAAGAGAGTGAGGAGAGTTGAGGCGAGAGGTGGG
TGCATTAAATTCATTCAAAGACAAGACGGCAGTAATCGGCGGATCAA

Coding sequence (CDS) from alignment at scaffold_11:699625..701971+

>mRNA_5838 ID=mRNA_5838|Name=jgi.p|Nanoce1779_2|590496|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at scaffold_11:699625..701971+ (Nannochloropsis oceanica)
ATGCTTGTTATTGTCCCAGAAACTATGAGTGCCAGCCTTGAACCTTTGGA
GCATTCCTCCCTGCATCCCCGGCTTGCATCTCGGGAAGCACCCTGCCTTC
TACGTTCTGACCTTATTTCCACACCCACATCTCACAAACGCACGGCAAAC
ATTCCTCGTTCAACCTCCCTACACTTGAATACCAGGCATGCCACCCGTAT
CACCACTACAACCGCTTCACCCTCTTCCTTCCCTACCCTCGCCGCCACCA
CCCCTTCTACCCGCACCCGCTCCCGCCTCTACATGCTGCATAAGAGCGCC
TTGGCCGGCAAGCCTCCCTCAGAGCTCACTGTGGCCGTCGCTGGTGCTAC
GGGATATATTGGCAAGGCCGTCGTACGCGAGTGTATTCGACGGGGTTACA
AAACCAAGGCGTACGTGAGGGAGGAGAGTGTGGGTAGGGCCAAGACATTG
GATTACCTTAAGGGAGCTGAAGTCATAGGTGGCTCCCTCGATGATACCTC
AGAAGTCCAAGCCAAGCTTTTTGGGGGCTCCGAGCCCGTCGATGTGGTGA
TATCATGCATCGCAAGTCGAAGTGGCGCGCCGGCCGATGCGTGGAAGGTT
GATCATGCGGCCAACGTACATTTGCTCGATGCGGCTCTGGGGGCGAAAGA
GCCTTCGAAGCACTTCATCATGCTCTCTGCTTATTGTGTAAAAACTCCCA
GGCTGGTGTTTCAACATGCCAAACTCAAGTTTGAGAATTATTTACGGGGG
AAAGGAGAGGAGATAACGTCCACAATTATCCGGCCCACGGCGTTCTTTAA
GAGCGTGAGTGGTCAGTTGGAAATCGTTCAGAAAGGCTACCCGTATGTGA
TGTTCGGTGATGGCGAGATTTGTAGCTGTAACCCAATCTCGGAGGCGGAT
CTGGCGGAGTATATTGTAAAGAGTATCGACGACGCCACCATGCACCACCA
GGTGTTGGATGTGGGGGGTCCGGATGAAGGACTAACACCCAAGAGGCAGG
CGGAGATATTGTTCGAGGTGGTGGGGAAGGAACCGAGCTTTATCAAGGTA
CCGATTGGCTTGTTCGATGCGATCATTGGAACCATCGATTTCTTCGCGAA
GTTTCTGGATGGGGCCAAGGACGCGGCGGAGCTGGCGAGGATTGGGAAGT
ACTATGCAGTGGAGGACATGCTGACAACCAAGCCGAGTGAAAAATACGGG
AAAATTACATTGAGGGAGCACTTTGCAAGGATAGCGAAGGAGGGGAATGA
GTATGACCCGTACACAACCATGTTCTCGAGTGCGAAGCAAAAGACGGAGG
CGTAG

Synonyms

Publications