jgi.p|Nanoce1779_2|630594, mRNA_5833 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|630594
Unique Name	mRNA_5833
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1056
Alignment location	scaffold_11:690299..691809 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	630680
Track	FilteredModels2
ProteinId	630594

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:690299..691809 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630594	gene_5833	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630594	mRNA_5833-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5833	CDS_5833	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:690299..691809+
coding sequence from alignment at scaffold_11:690299..691809+

mRNA sequence

>mRNA_5833 ID=mRNA_5833|Name=jgi.p|Nanoce1779_2|630594|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp
CCTACGACAAGGAAATGAAGGAACAACATTTAACTACGAAGGCTCGTTTA
CTTTACGTTATGTTTGGTTATATGTATGTTTATATCTCAGTTATGATCGT
AAGGTCTACATTTGAAAGCAGGACAGAGGGGTGGGAAGTTGTAAAATTCC
TCGTCTCTATTGTGCTTTGCTGTGAAAGCGAGGAAAGGAGTGGTAAAGTT
GTTTGGGAGGGGTACGGCTATCGCTGCATTTATAGTATCTCGTGCCCATG
TTGTTCTGCTTCTTTTTCTCGTTCTTTGAACCCAAAACATACACACAAGA
GCCTGGAGCATTCACGTTTTGCTCTTGTCTTGACCAGCGTCTCTTGTTGC
TTACCTCTGTGCTGTTTTGTTCATCATTCCCTTCATAAAACCCAGTTAAA
TAAAGACACGCACAATCATCACATGATGATGATCATCATCGTCTTCAACC
CCGAGAGCCCATCTCCCCCCCTCCCTCTTCCCGTGCTAACATACACAACA
CACAGCAAACGCCAAGCAAGGAGCATGTTTGGCAACCTGTTCGGCAAGCA
GTCTATAGACAACCTGGACCTGGAGGGCTGGCGCCGCAAGCGGCAGCGCG
AAGATATCGAGGAGGTCCTGGACAGTAGCGATGATGAGGAGTGCGAGCAG
CTTGAGGAGCGGGAGCAGTCAAGGACAGAGGAAAGCGGGGGTGGGCGCCG
CGGCAAGGCGGGGCGGATGCGTCTGAACGAGGAGACCACCATGAGCAGCT
GGCGCACGACGACGACGACGACACTGACTGAAGAGCGCGACGTCGCCATG
CAATACATGCAGCAAGGCGGAGGAGGGGAAGGAGGGGGGAAGGAGGAAAA
TGGGGAGGAAAGGGGGGAAGAGGATGGGATAGGGGGAATGCTGAGAATGA
TGACGGCGATGCAGGAGGAACCACGGAGAGGAGTGGATGAAGGTCAGGGC
CAGGACGAGGATGAGGAGGCAGGAGAAGAGGGGGGAGAAGAAGAGGAGGA
GATCACGGAAGAGGCTTTGTTAAAGACGCTATTAGAAGCCGTGGCGTCCG
CGAAAC

protein sequence of jgi.p|Nanoce1779_2|630594

>mRNA_5833-protein ID=mRNA_5833-protein|Name=jgi.p|Nanoce1779_2|630594|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MKEQHLTTKARLLYVMFGYMYVYISVMIVRSTFESRTEGWEVVKFLVSIV
LCCESEERSGKVVWEGYGYRCIYSISCPCCSASFSRSLNPKHTHKSLEHS
RFALVLTSVSCCLPLCCFVHHSLHKTQLNKDTHNHHMMMIIIVFNPESPS
PPLPLPVLTYTTHSKRQARSMFGNLFGKQSIDNLDLEGWRRKRQREDIEE
VLDSSDDEECEQLEEREQSRTEESGGGRRGKAGRMRLNEETTMSSWRTTT
TTTLTEERDVAMQYMQQGGGGEGGGKEENGEERGEEDGIGGMLRMMTAMQ
EEPRRGVDEGQGQDEDEEAGEEGGEEEEEITEEALLKTLLEAVASAK

mRNA from alignment at scaffold_11:690299..691809+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5833 ID=mRNA_5833|Name=jgi.p|Nanoce1779_2|630594|organism=Nannochloropsis oceanica|type=mRNA|length=1511bp|location=Sequence derived from alignment at scaffold_11:690299..691809+ (Nannochloropsis oceanica)
CCTACGACAAGGAAATGAAGGAACAACATTTAACTACGAAGGCTCGTTTA
CTTTACGTTATGTTTGGTTATATGTATGTTTATATCTCAGTTATGATCGT
AAGGTCTACATTTGAAAGCAGGACAGAGGGGTGGGAAGTTGTAAAATTCC
TCGTCTCTATTGTGCTTTGCTGTGAAAGCGAGGAAAGGAGTGGTAAAGTT
GTTTGGGAGGGGTACGGCTATCGCTGCATTTATAGTATCTCGTGCCCATG
TTGTTCTGCTTCTTTTTCTCGTTCTTTGAACCCAAAACATACACACAAGA
GCCTGGAGCATTCACGTTTTGCTCTTGTCTTGACCAGCGTCTCTTGTTGC
TTACCTCTGTGCTGTTTTGTTCATCATTCCCTTCATAAAACCCAGTTAAA
TAAAGACACGCACAATCATCACATGATGATGATCATCATCGTCTTCAACC
CCGAGAGCCCATCTCCCCCCCTCCCTCTTCCCGTGCTAACATACACAACA
CACAGCAAACGCCAAGCAAGGAGCATGTTTGGCAACCTGTTCGGCAAGCA
GTCTATAGACAACCTGGACCTGGAGGGCTGGCGCCGCAAGCGGCAGCGCG
AAGGTAAATAATACGCTAAGTTCTGGGGAGCAGGGGTCTGGTTGTTCCGC
TTGCCGATAGATTAGATACCCTCATTTGCACACAGCTCACTACAAACCGT
GCACACGCACACGCACGCAACACAGATATCGAGGAGGTCCTGGACAGTAG
CGATGATGAGGAGTGCGAGCAGCTTGAGGAGCGGGAGCAGTCAAGGACAG
AGGAAAGCGGGGGTGGGCGCCGCGGCAAGGCGGGGCGGATGCGTCTGAAC
GAGGTGAGAATAGAGGAGAAGGGAGGGACAGGCAGAGGGTACTAGCTATC
GAAGTGCAGGCACATGTTTTTTTGGTACCATGCACTTGCATTTTGTAGGA
GGGTCTGGGTGTCGACCGAAATGAAAGGAAGAAGGAGATGGAGGGCAAGA
GGAAGGGCCCATCATCCCTAAAGGCGCGCCTCTCCCTTTGATACCCCTCA
TTGCTACTCCACTCTTATCCTCTTCTTTGCAATTCATAAACTGTTGCCCA
AAGTGTGGAACACCCAATCGCACTTTTTGTGGGTGTAGCCTTTCACTTAT
CATCCTCTTGCCTCATACTCTCCCAAAAATAAATAGGAGACCACCATGAG
CAGCTGGCGCACGACGACGACGACGACACTGACTGAAGAGCGCGACGTCG
CCATGCAATACATGCAGCAAGGCGGAGGAGGGGAAGGAGGGGGGAAGGAG
GAAAATGGGGAGGAAAGGGGGGAAGAGGATGGGATAGGGGGAATGCTGAG
AATGATGACGGCGATGCAGGAGGAACCACGGAGAGGAGTGGATGAAGGTC
AGGGCCAGGACGAGGATGAGGAGGCAGGAGAAGAGGGGGGAGAAGAAGAG
GAGGAGATCACGGAAGAGGCTTTGTTAAAGACGCTATTAGAAGCCGTGGC
GTCCGCGAAAC

Coding sequence (CDS) from alignment at scaffold_11:690299..691809+

>mRNA_5833 ID=mRNA_5833|Name=jgi.p|Nanoce1779_2|630594|organism=Nannochloropsis oceanica|type=CDS|length=3123bp|location=Sequence derived from alignment at scaffold_11:690299..691809+ (Nannochloropsis oceanica)
ATGAAGGAACAACATTTAACTACGAAGGCTCGTTTACTTTACGTTATGTT
TGGTTATATGTATGTTTATATCTCAGTTATGATCGTAAGGTCTACATTTG
AAAGCAGGACAGAGGGGTGGGAAGTTGTAAAATTCCTCGTCTCTATTGTG
CTTTGCTGTGAAAGCGAGGAAAGGAGTGGTAAAGTTGTTTGGGAGGGGTA
CGGCTATCGCTGCATTTATAGTATCTCGTGCCCATGTTGTTCTGCTTCTT
TTTCTCGTTCTTTGAACCCAAAACATACACACAAGAGCCTGGAGCATTCA
CGTTTTGCTCTTGTCTTGACCAGCGTCTCTTGTTGCTTACCTCTGTGCTG
TTTTGTTCATCATTCCCTTCATAAAACCCAGTTAAATAAAGACACGCACA
ATCATCACATGATGATGATCATCATCGTCTTCAACCCCGAGAGCCCATCT
CCCCCCCTCCCTCTTCCCGTGCTAACATACACAACACACAGCAAACGCCA
AGCAAGGAGCATGTTTGGCAACCTGTTCGGCAAGCAGTCTATAGACAACC
TGGACCTGGAGGGCTGGCGCCGCAAGCGGCAGCGCGAAGATATCGAGGAG
GTCCTGGACAGTAGCGATGATGAGGAGTGCGAGCAGCTTGAGGAGCGGGA
GCAGTCAAGGACAGAGGAAAGCGGGGGTGGGCGCCGCGGCAAGGCGGGGC
GGATGCGTCTGAACGAGGAGACCACCATGAGCAGCTGGCGCACGACGACG
ACGACGACACTGACTGAAGAGCGCGACGTCGCCATGCAATACATGCAGCA
AGGCGGAGGAGGGGAAGGAGGGGGGAAGGAGGAAAATGGGGAGGAAAGGG
GGGAAGAGGATGGGATAGGGGGAATGCTGAGAATGATGACGGCGATGCAG
GAGGAACCACGGAGAGGAGTGGATGAAGGTCAGGGCCAGGACGAGGATGA
GGAGGCAGGAGAAGAGGGGGGAGAAGAAGAGGAGGAGATCACGGAAGAGG
CTTTGTTAAAGACGCTATTAGAAGCCGTGGCGTCCGCGAAAATGAAGGAA
CAACATTTAACTACGAAGGCTCGTTTACTTTACGTTATGTTTGGTTATAT
GTATGTTTATATCTCAGTTATGATCGTAAGGTCTACATTTGAAAGCAGGA
CAGAGGGGTGGGAAGTTGTAAAATTCCTCGTCTCTATTGTGCTTTGCTGT
GAAAGCGAGGAAAGGAGTGGTAAAGTTGTTTGGGAGGGGTACGGCTATCG
CTGCATTTATAGTATCTCGTGCCCATGTTGTTCTGCTTCTTTTTCTCGTT
CTTTGAACCCAAAACATACACACAAGAGCCTGGAGCATTCACGTTTTGCT
CTTGTCTTGACCAGCGTCTCTTGTTGCTTACCTCTGTGCTGTTTTGTTCA
TCATTCCCTTCATAAAACCCAGTTAAATAAAGACACGCACAATCATCACA
TGATGATGATCATCATCGTCTTCAACCCCGAGAGCCCATCTCCCCCCCTC
CCTCTTCCCGTGCTAACATACACAACACACAGCAAACGCCAAGCAAGGAG
CATGTTTGGCAACCTGTTCGGCAAGCAGTCTATAGACAACCTGGACCTGG
AGGGCTGGCGCCGCAAGCGGCAGCGCGAAGATATCGAGGAGGTCCTGGAC
AGTAGCGATGATGAGGAGTGCGAGCAGCTTGAGGAGCGGGAGCAGTCAAG
GACAGAGGAAAGCGGGGGTGGGCGCCGCGGCAAGGCGGGGCGGATGCGTC
TGAACGAGGAGACCACCATGAGCAGCTGGCGCACGACGACGACGACGACA
CTGACTGAAGAGCGCGACGTCGCCATGCAATACATGCAGCAAGGCGGAGG
AGGGGAAGGAGGGGGGAAGGAGGAAAATGGGGAGGAAAGGGGGGAAGAGG
ATGGGATAGGGGGAATGCTGAGAATGATGACGGCGATGCAGGAGGAACCA
CGGAGAGGAGTGGATGAAGGTCAGGGCCAGGACGAGGATGAGGAGGCAGG
AGAAGAGGGGGGAGAAGAAGAGGAGGAGATCACGGAAGAGGCTTTGTTAA
AGACGCTATTAGAAGCCGTGGCGTCCGCGAAAATGAAGGAACAACATTTA
ACTACGAAGGCTCGTTTACTTTACGTTATGTTTGGTTATATGTATGTTTA
TATCTCAGTTATGATCGTAAGGTCTACATTTGAAAGCAGGACAGAGGGGT
GGGAAGTTGTAAAATTCCTCGTCTCTATTGTGCTTTGCTGTGAAAGCGAG
GAAAGGAGTGGTAAAGTTGTTTGGGAGGGGTACGGCTATCGCTGCATTTA
TAGTATCTCGTGCCCATGTTGTTCTGCTTCTTTTTCTCGTTCTTTGAACC
CAAAACATACACACAAGAGCCTGGAGCATTCACGTTTTGCTCTTGTCTTG
ACCAGCGTCTCTTGTTGCTTACCTCTGTGCTGTTTTGTTCATCATTCCCT
TCATAAAACCCAGTTAAATAAAGACACGCACAATCATCACATGATGATGA
TCATCATCGTCTTCAACCCCGAGAGCCCATCTCCCCCCCTCCCTCTTCCC
GTGCTAACATACACAACACACAGCAAACGCCAAGCAAGGAGCATGTTTGG
CAACCTGTTCGGCAAGCAGTCTATAGACAACCTGGACCTGGAGGGCTGGC
GCCGCAAGCGGCAGCGCGAAGATATCGAGGAGGTCCTGGACAGTAGCGAT
GATGAGGAGTGCGAGCAGCTTGAGGAGCGGGAGCAGTCAAGGACAGAGGA
AAGCGGGGGTGGGCGCCGCGGCAAGGCGGGGCGGATGCGTCTGAACGAGG
AGACCACCATGAGCAGCTGGCGCACGACGACGACGACGACACTGACTGAA
GAGCGCGACGTCGCCATGCAATACATGCAGCAAGGCGGAGGAGGGGAAGG
AGGGGGGAAGGAGGAAAATGGGGAGGAAAGGGGGGAAGAGGATGGGATAG
GGGGAATGCTGAGAATGATGACGGCGATGCAGGAGGAACCACGGAGAGGA
GTGGATGAAGGTCAGGGCCAGGACGAGGATGAGGAGGCAGGAGAAGAGGG
GGGAGAAGAAGAGGAGGAGATCACGGAAGAGGCTTTGTTAAAGACGCTAT
TAGAAGCCGTGGCGTCCGCGAAA

Synonyms

Publications