jgi.p|Nanoce1779_2|577848, mRNA_583 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577848
Unique NamemRNA_583
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length734
Alignment locationscaffold_3:1444806..1445539 -

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Properties
Property NameValue
TranscriptId577934
TrackFilteredModels2
ProteinId577848
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1444806..1445539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577848gene_583Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577848mRNA_583-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_583CDS_583Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_583 ID=mRNA_583|Name=jgi.p|Nanoce1779_2|577848|organism=Nannochloropsis oceanica|type=mRNA|length=734bp
TTTTCTTGTTTTGTCATGTATTCCCTTGCTCGCATGCTCACAGGCGCACA
ATTCAACACTTCAAACACTACACACGCTCGTGAGCCGTGGCGGGCCTTAA
CCTTGGTGCCATTTGGCCTTGTATGTGCAGGAGAGCGAAGCCCATATCTA
TCCGTTGTACTCTTTTTTGGCTGGCTGCTTCCTCTCTCCTCTAGTGTGCG
CGCCCACATCTGCGTCCACACCCCTGCGCGCCCCTTGCCTTGGTGGAGGG
CTTCATACTCTTCTAAAGCCCTTCATGAACTTTGCGTTGATGTCATTCGG
TCCTGTGTTCGCAGGAGGGCAGACCCCATACCAATTTTTGTTGTGCTTTT
TTTGGGTGTTGCTTCCTCTCTCAGCGCGCGCCCACATCCGCGTCCACACC
CCTACATGCCCCTCGCCTTGCCCTCCATCAAGACAAAGACAACCTGCTCT
TGCTCCTCACTTTCCATGAAGTGGATTGGCGTCTTTCCCTTGGGGCTCAT
TTGCCCCTCGTGTCTTGCCCCTTCTAAACCAACTTGATGCTGCCCAGGAG
ATTCCTGATGATGATGTCGAGCCCACGCCCGCATCCTCGCAACAACACCA
CCATCACTGCCGCACACACATAGCATCCACACCAACATATTACCTCATAT
ACACAAACGACAGTAGCATCCATGCCTTTCGGTGTCCGTCGCTTTTCTCC
TTCCAAGGCCACTACTACCAACGCCACTGCCGTT
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protein sequence of jgi.p|Nanoce1779_2|577848

>mRNA_583-protein ID=mRNA_583-protein|Name=jgi.p|Nanoce1779_2|577848|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MYSLARMLTGAQFNTSNTTHAREPWRALTLVPFGLVCAGERSPYLSVVLF
FGWLLPLSSSVRAHICVHTPARPLPWWRASYSSKALHELCVDVIRSCVRR
RADPIPIFVVLFLGVASSLSARPHPRPHPYMPLALPSIKTKTTCSCSSLS
MKWIGVFPLGLICPSCLAPSKPT*
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mRNA from alignment at scaffold_3:1444806..1445539-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_583 ID=mRNA_583|Name=jgi.p|Nanoce1779_2|577848|organism=Nannochloropsis oceanica|type=mRNA|length=734bp|location=Sequence derived from alignment at scaffold_3:1444806..1445539- (Nannochloropsis oceanica)
TTTTCTTGTTTTGTCATGTATTCCCTTGCTCGCATGCTCACAGGCGCACA
ATTCAACACTTCAAACACTACACACGCTCGTGAGCCGTGGCGGGCCTTAA
CCTTGGTGCCATTTGGCCTTGTATGTGCAGGAGAGCGAAGCCCATATCTA
TCCGTTGTACTCTTTTTTGGCTGGCTGCTTCCTCTCTCCTCTAGTGTGCG
CGCCCACATCTGCGTCCACACCCCTGCGCGCCCCTTGCCTTGGTGGAGGG
CTTCATACTCTTCTAAAGCCCTTCATGAACTTTGCGTTGATGTCATTCGG
TCCTGTGTTCGCAGGAGGGCAGACCCCATACCAATTTTTGTTGTGCTTTT
TTTGGGTGTTGCTTCCTCTCTCAGCGCGCGCCCACATCCGCGTCCACACC
CCTACATGCCCCTCGCCTTGCCCTCCATCAAGACAAAGACAACCTGCTCT
TGCTCCTCACTTTCCATGAAGTGGATTGGCGTCTTTCCCTTGGGGCTCAT
TTGCCCCTCGTGTCTTGCCCCTTCTAAACCAACTTGATGCTGCCCAGGAG
ATTCCTGATGATGATGTCGAGCCCACGCCCGCATCCTCGCAACAACACCA
CCATCACTGCCGCACACACATAGCATCCACACCAACATATTACCTCATAT
ACACAAACGACAGTAGCATCCATGCCTTTCGGTGTCCGTCGCTTTTCTCC
TTCCAAGGCCACTACTACCAACGCCACTGCCGTT
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Coding sequence (CDS) from alignment at scaffold_3:1444806..1445539-

>mRNA_583 ID=mRNA_583|Name=jgi.p|Nanoce1779_2|577848|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at scaffold_3:1444806..1445539- (Nannochloropsis oceanica)
ATGTATTCCCTTGCTCGCATGCTCACAGGCGCACAATTCAACACTTCAAA
CACTACACACGCTCGTGAGCCGTGGCGGGCCTTAACCTTGGTGCCATTTG
GCCTTGTATGTGCAGGAGAGCGAAGCCCATATCTATCCGTTGTACTCTTT
TTTGGCTGGCTGCTTCCTCTCTCCTCTAGTGTGCGCGCCCACATCTGCGT
CCACACCCCTGCGCGCCCCTTGCCTTGGTGGAGGGCTTCATACTCTTCTA
AAGCCCTTCATGAACTTTGCGTTGATGTCATTCGGTCCTGTGTTCGCAGG
AGGGCAGACCCCATACCAATTTTTGTTGTGCTTTTTTTGGGTGTTGCTTC
CTCTCTCAGCGCGCGCCCACATCCGCGTCCACACCCCTACATGCCCCTCG
CCTTGCCCTCCATCAAGACAAAGACAACCTGCTCTTGCTCCTCACTTTCC
ATGAAGTGGATTGGCGTCTTTCCCTTGGGGCTCATTTGCCCCTCGTGTCT
TGCCCCTTCTAAACCAACTTGA
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Synonyms
Publications