jgi.p|Nanoce1779_2|590465, mRNA_5829 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590465
Unique Name	mRNA_5829
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1223
Alignment location	scaffold_11:671714..673627 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590551
Track	FilteredModels2
ProteinId	590465

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:671714..673627 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590465	gene_5829	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590465	mRNA_5829-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5829	CDS_5829	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:671714..673627+
coding sequence from alignment at scaffold_11:671714..673627+

mRNA sequence

>mRNA_5829 ID=mRNA_5829|Name=jgi.p|Nanoce1779_2|590465|organism=Nannochloropsis oceanica|type=mRNA|length=1223bp
AGAAAAAGCAGGATGCTGCAGCAAATCAACAAGACTTTGGAGCCACTCTT
GGGCGAGCACAATGTTGCGGCAGCGGTGACGCTGAGTGTAATCGCCTTGA
CCATTGTCGTTTTCCGCGTTCGACGACCATGCTCCTTCGACGTGATGAAC
ATCATGAAGAACAGCGACTTCGAGGCGCATAAAGCCAAGGACGTGCAAAC
CTCAGTGGATCAGTACGCTACCCTTTTCACCGGCGCCCGGACCAAAATCG
GCTCCATCTCCAGCGCCGGCAGTATCGAGTCCCGGCAACAAAACTACAAA
ACATTGGTGGGAAACTTCTACGATCTAGCCACCGACTTTTACGAGTACGG
CTGGGGTCAGTCCTTTCACTTTGCTCCTCGTTGGAAGGGAGAAGCGTTCA
GAGAGTCAATCAAGCGGGCTGAATATCATCTAAGCTCACGCTTAGGGTTG
AAGCCAGGCATGCGCGTGTTGGATGTCGGGTGTGGAGTAGGTGGTCCAAT
GAGAAACATAGCCATCTTCTCAGGTGCGAAAATCGATGGGATCTCGATCA
ATGAGTACCAGGTGAAGATAGGCAACAAGTACAACGAACAACATGGCCTC
GCGGACGCCTGCAAGTCCCATCAAGGCGATTTTCAGAACCTCTCCGATCA
GTGGGAGGAAGCTTCGTTCGATGCCGCTTTTGCCGTGGAAGCCACTTGCC
ACTCCCCCGACAAGACCAAGTGCTTTTCCGAAGTCCTGAAAATTCTCAAA
CCTGGCGGCCTGTTCGCGAATTATGAGTGGATCGTAACGGATAAATACTC
CCCATCCAACCCCACGCACACACGCATCAAGGAAGGGATTGAGGTTGGCA
ACGGGCTGCCCACCCTGGCAACGGCCGGGGAAGTGCTCGACGCAGTCCGT
GCAGCGGGCTTCGAGGTCGTTGACGCGTACGATGCGAATGCAGGCGTGCA
TTCTCCGAATCAGATTCCCTGGTACGACACATTGACGGGAAAATTTACCT
TGGGTGGTTTCAGGATGACCTGGCTGGGGAGGGTAATCACGCACCTGTTT
GTCTCTGTGCTGGAGCTGGTGCGGATTGCGCCGAGGGGGACGTCGAAGAT
CAGTTCCATTTTGAATGCAACGGCGATCGACTTGGTAGAGGGGGGAAAGC
GGGAGATTTTTACACCGAGTTTCTTTTTTGTGGCAAGAAAGCCGCAGTAG
AGAGGGAGGGAATGAAGGAGGGA

protein sequence of jgi.p|Nanoce1779_2|590465

>mRNA_5829-protein ID=mRNA_5829-protein|Name=jgi.p|Nanoce1779_2|590465|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MLQQINKTLEPLLGEHNVAAAVTLSVIALTIVVFRVRRPCSFDVMNIMKN
SDFEAHKAKDVQTSVDQYATLFTGARTKIGSISSAGSIESRQQNYKTLVG
NFYDLATDFYEYGWGQSFHFAPRWKGEAFRESIKRAEYHLSSRLGLKPGM
RVLDVGCGVGGPMRNIAIFSGAKIDGISINEYQVKIGNKYNEQHGLADAC
KSHQGDFQNLSDQWEEASFDAAFAVEATCHSPDKTKCFSEVLKILKPGGL
FANYEWIVTDKYSPSNPTHTRIKEGIEVGNGLPTLATAGEVLDAVRAAGF
EVVDAYDANAGVHSPNQIPWYDTLTGKFTLGGFRMTWLGRVITHLFVSVL
ELVRIAPRGTSKISSILNATAIDLVEGGKREIFTPSFFFVARKPQ*

mRNA from alignment at scaffold_11:671714..673627+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5829 ID=mRNA_5829|Name=jgi.p|Nanoce1779_2|590465|organism=Nannochloropsis oceanica|type=mRNA|length=1914bp|location=Sequence derived from alignment at scaffold_11:671714..673627+ (Nannochloropsis oceanica)
AGAAAAAGCAGGATGCTGCAGCAAATCAACAAGACTTTGGAGCCACTCTT
GGGCGAGCACAATGTTGCGGCAGCGGTACGTGCGTGTCATCTTACCTGAT
CTCTACATTCACAGTTTCTCTGGTTCCTGCCTGATCAGTGCACCTGAGGG
ATTCATGTGCAGCGTTTCTTTTGTGTGATACCTTGAACATTTTTTTTGGT
GCCGGTACATGCTTGTGCTGATGGCCACGAGCTCTCACTGGAGTTGTTGT
TCGGATGGGAGCTTGCGCTTGTGTATATGCATGTCTCCATGGTATGTGTT
CTTCCCTGTGTGCCTTCCCCACTTACGTGTCTACTTCTCAATTTTTTTAT
GTAATAGGTGACGCTGAGTGTAATCGCCTTGACCATTGTCGTTTTCCGCG
TTCGACGACCATGCTCCTTCGACGTGATGAACATCATGAAGAACAGCGAC
TTCGAGGCGCATAAAGCCAAGGTAGGTGTCGGGTTGGGAGGACGAGAGGA
CGGGAGGCGTTGAACAATGGGGTGTTAAGCTAGGGGACAAGCCATACTTA
TGTGACATGAAAGCTGCCTTTCGCAAGCGTTTGACCTCTCCATGTTTCCA
TGGGATAAGAACAACCTTTTCATTATATCTATTTCTCCTCTTCTTCCATC
AGGACGTGCAAACCTCAGTGGATCAGTACGCTACCCTTTTCACCGGCGCC
CGGACCAAAATCGGCTCCATCTCCAGCGCCGGCAGTATCGAGTCCCGGCA
ACAAAACTACAAAACATTGGTGGGAAACTTCTACGATCTAGCCACCGACT
TTTACGAGTACGGCTGGGGTCAGGTACGGAGGGAGTGAGTGAGGGAGGGA
TGGAGGGATAAAGGGAATGAGAAGTATATCGCCTGCTAACTGTCCCCTTC
CTCCCTCTCTTCCCCCCTTCGTCTGGGCAGTCCTTTCACTTTGCTCCTCG
TTGGAAGGGAGAAGCGTTCAGAGAGTCAATCAAGCGGGCTGAATATCATC
TAAGCTCACGCTTAGGGTTGAAGCCAGGCATGCGCGTGTTGGATGTCGGG
TGTGGAGTAGGTGGTCCAATGAGAAACATAGCCATCTTCTCAGGTGCGAA
AATCGATGGGATCTCGATCAATGAGTACCAGGTAAGGCTTAAGAGAAAGA
TGGAGGAGGGGAGGGAGGGAGGGAGGGGAGCGGAGGAAGAGAGGGCCACC
CTCCTTCTCCTTGATTTCTCCCGCCCACCCCCCCTCCTCCCCTACTCCCC
AGGTGAAGATAGGCAACAAGTACAACGAACAACATGGCCTCGCGGACGCC
TGCAAGTCCCATCAAGGCGATTTTCAGAACCTCTCCGATCAGTGGGAGGA
AGCTTCGTTCGATGCCGCTTTTGCCGTGGAAGCCACTTGCCACTCCCCCG
ACAAGACCAAGTGCTTTTCCGAAGTCCTGAAAATTCTCAAACCTGGCGGC
CTGTTCGCGAATTATGAGTGGATCGTAACGGATAAATACTCCCCATCCAA
CCCCACGCACACACGCATCAAGGAAGGGATTGAGGTTGGCAACGGGCTGC
CCACCCTGGCAACGGCCGGGGAAGTGCTCGACGCAGTCCGTGCAGCGGGC
TTCGAGGTCGTTGACGCGTACGATGCGAATGCAGGCGTGCATTCTCCGAA
TCAGATTCCCTGGTACGACACATTGACGGGAAAATTTACCTTGGGTGGTT
TCAGGATGACCTGGCTGGGGAGGGTAATCACGCACCTGTTTGTCTCTGTG
CTGGAGCTGGTGCGGATTGCGCCGAGGGGGACGTCGAAGATCAGTTCCAT
TTTGAATGCAACGGCGATCGACTTGGTAGAGGGGGGAAAGCGGGAGATTT
TTACACCGAGTTTCTTTTTTGTGGCAAGAAAGCCGCAGTAGAGAGGGAGG
GAATGAAGGAGGGA

Coding sequence (CDS) from alignment at scaffold_11:671714..673627+

>mRNA_5829 ID=mRNA_5829|Name=jgi.p|Nanoce1779_2|590465|organism=Nannochloropsis oceanica|type=CDS|length=5940bp|location=Sequence derived from alignment at scaffold_11:671714..673627+ (Nannochloropsis oceanica)
ATGCTGCAGCAAATCAACAAGACTTTGGAGCCACTCTTGGGCGAGCACAA
TGTTGCGGCAGCGGTGACGCTGAGTGTAATCGCCTTGACCATTGTCGTTT
TCCGCGTTCGACGACCATGCTCCTTCGACGTGATGAACATCATGAAGAAC
AGCGACTTCGAGGCGCATAAAGCCAAGGACGTGCAAACCTCAGTGGATCA
GTACGCTACCCTTTTCACCGGCGCCCGGACCAAAATCGGCTCCATCTCCA
GCGCCGGCAGTATCGAGTCCCGGCAACAAAACTACAAAACATTGGTGGGA
AACTTCTACGATCTAGCCACCGACTTTTACGAGTACGGCTGGGGTCAGTC
CTTTCACTTTGCTCCTCGTTGGAAGGGAGAAGCGTTCAGAGAGTCAATCA
AGCGGGCTGAATATCATCTAAGCTCACGCTTAGGGTTGAAGCCAGGCATG
CGCGTGTTGGATGTCGGGTGTGGAGTAGGTGGTCCAATGAGAAACATAGC
CATCTTCTCAGGTGCGAAAATCGATGGGATCTCGATCAATGAGTACCAGG
TGAAGATAGGCAACAAGTACAACGAACAACATGGCCTCGCGGACGCCTGC
AAGTCCCATCAAGGCGATTTTCAGAACCTCTCCGATCAGTGGGAGGAAGC
TTCGTTCGATGCCGCTTTTGCCGTGGAAGCCACTTGCCACTCCCCCGACA
AGACCAAGTGCTTTTCCGAAGTCCTGAAAATTCTCAAACCTGGCGGCCTG
TTCGCGAATTATGAGTGGATCGTAACGGATAAATACTCCCCATCCAACCC
CACGCACACACGCATCAAGGAAGGGATTGAGGTTGGCAACGGGCTGCCCA
CCCTGGCAACGGCCGGGGAAGTGCTCGACGCAGTCCGTGCAGCGGGCTTC
GAGGTCGTTGACGCGTACGATGCGAATGCAGGCGTGCATTCTCCGAATCA
GATTCCCTGGTACGACACATTGACGGGAAAATTTACCTTGGGTGGTTTCA
GGATGACCTGGCTGGGGAGGGTAATCACGCACCTGTTTGTCTCTGTGCTG
GAGCTGGTGCGGATTGCGCCGAGGGGGACGTCGAAGATCAGTTCCATTTT
GAATGCAACGGCGATCGACTTGGTAGAGGGGGGAAAGCGGGAGATTTTTA
CACCGAGTTTCTTTTTTGTGGCAAGAAAGCCGCAGTAGATGCTGCAGCAA
ATCAACAAGACTTTGGAGCCACTCTTGGGCGAGCACAATGTTGCGGCAGC
GGTGACGCTGAGTGTAATCGCCTTGACCATTGTCGTTTTCCGCGTTCGAC
GACCATGCTCCTTCGACGTGATGAACATCATGAAGAACAGCGACTTCGAG
GCGCATAAAGCCAAGGACGTGCAAACCTCAGTGGATCAGTACGCTACCCT
TTTCACCGGCGCCCGGACCAAAATCGGCTCCATCTCCAGCGCCGGCAGTA
TCGAGTCCCGGCAACAAAACTACAAAACATTGGTGGGAAACTTCTACGAT
CTAGCCACCGACTTTTACGAGTACGGCTGGGGTCAGTCCTTTCACTTTGC
TCCTCGTTGGAAGGGAGAAGCGTTCAGAGAGTCAATCAAGCGGGCTGAAT
ATCATCTAAGCTCACGCTTAGGGTTGAAGCCAGGCATGCGCGTGTTGGAT
GTCGGGTGTGGAGTAGGTGGTCCAATGAGAAACATAGCCATCTTCTCAGG
TGCGAAAATCGATGGGATCTCGATCAATGAGTACCAGGTGAAGATAGGCA
ACAAGTACAACGAACAACATGGCCTCGCGGACGCCTGCAAGTCCCATCAA
GGCGATTTTCAGAACCTCTCCGATCAGTGGGAGGAAGCTTCGTTCGATGC
CGCTTTTGCCGTGGAAGCCACTTGCCACTCCCCCGACAAGACCAAGTGCT
TTTCCGAAGTCCTGAAAATTCTCAAACCTGGCGGCCTGTTCGCGAATTAT
GAGTGGATCGTAACGGATAAATACTCCCCATCCAACCCCACGCACACACG
CATCAAGGAAGGGATTGAGGTTGGCAACGGGCTGCCCACCCTGGCAACGG
CCGGGGAAGTGCTCGACGCAGTCCGTGCAGCGGGCTTCGAGGTCGTTGAC
GCGTACGATGCGAATGCAGGCGTGCATTCTCCGAATCAGATTCCCTGGTA
CGACACATTGACGGGAAAATTTACCTTGGGTGGTTTCAGGATGACCTGGC
TGGGGAGGGTAATCACGCACCTGTTTGTCTCTGTGCTGGAGCTGGTGCGG
ATTGCGCCGAGGGGGACGTCGAAGATCAGTTCCATTTTGAATGCAACGGC
GATCGACTTGGTAGAGGGGGGAAAGCGGGAGATTTTTACACCGAGTTTCT
TTTTTGTGGCAAGAAAGCCGCAGTAGATGCTGCAGCAAATCAACAAGACT
TTGGAGCCACTCTTGGGCGAGCACAATGTTGCGGCAGCGGTGACGCTGAG
TGTAATCGCCTTGACCATTGTCGTTTTCCGCGTTCGACGACCATGCTCCT
TCGACGTGATGAACATCATGAAGAACAGCGACTTCGAGGCGCATAAAGCC
AAGGACGTGCAAACCTCAGTGGATCAGTACGCTACCCTTTTCACCGGCGC
CCGGACCAAAATCGGCTCCATCTCCAGCGCCGGCAGTATCGAGTCCCGGC
AACAAAACTACAAAACATTGGTGGGAAACTTCTACGATCTAGCCACCGAC
TTTTACGAGTACGGCTGGGGTCAGTCCTTTCACTTTGCTCCTCGTTGGAA
GGGAGAAGCGTTCAGAGAGTCAATCAAGCGGGCTGAATATCATCTAAGCT
CACGCTTAGGGTTGAAGCCAGGCATGCGCGTGTTGGATGTCGGGTGTGGA
GTAGGTGGTCCAATGAGAAACATAGCCATCTTCTCAGGTGCGAAAATCGA
TGGGATCTCGATCAATGAGTACCAGGTGAAGATAGGCAACAAGTACAACG
AACAACATGGCCTCGCGGACGCCTGCAAGTCCCATCAAGGCGATTTTCAG
AACCTCTCCGATCAGTGGGAGGAAGCTTCGTTCGATGCCGCTTTTGCCGT
GGAAGCCACTTGCCACTCCCCCGACAAGACCAAGTGCTTTTCCGAAGTCC
TGAAAATTCTCAAACCTGGCGGCCTGTTCGCGAATTATGAGTGGATCGTA
ACGGATAAATACTCCCCATCCAACCCCACGCACACACGCATCAAGGAAGG
GATTGAGGTTGGCAACGGGCTGCCCACCCTGGCAACGGCCGGGGAAGTGC
TCGACGCAGTCCGTGCAGCGGGCTTCGAGGTCGTTGACGCGTACGATGCG
AATGCAGGCGTGCATTCTCCGAATCAGATTCCCTGGTACGACACATTGAC
GGGAAAATTTACCTTGGGTGGTTTCAGGATGACCTGGCTGGGGAGGGTAA
TCACGCACCTGTTTGTCTCTGTGCTGGAGCTGGTGCGGATTGCGCCGAGG
GGGACGTCGAAGATCAGTTCCATTTTGAATGCAACGGCGATCGACTTGGT
AGAGGGGGGAAAGCGGGAGATTTTTACACCGAGTTTCTTTTTTGTGGCAA
GAAAGCCGCAGTAGATGCTGCAGCAAATCAACAAGACTTTGGAGCCACTC
TTGGGCGAGCACAATGTTGCGGCAGCGGTGACGCTGAGTGTAATCGCCTT
GACCATTGTCGTTTTCCGCGTTCGACGACCATGCTCCTTCGACGTGATGA
ACATCATGAAGAACAGCGACTTCGAGGCGCATAAAGCCAAGGACGTGCAA
ACCTCAGTGGATCAGTACGCTACCCTTTTCACCGGCGCCCGGACCAAAAT
CGGCTCCATCTCCAGCGCCGGCAGTATCGAGTCCCGGCAACAAAACTACA
AAACATTGGTGGGAAACTTCTACGATCTAGCCACCGACTTTTACGAGTAC
GGCTGGGGTCAGTCCTTTCACTTTGCTCCTCGTTGGAAGGGAGAAGCGTT
CAGAGAGTCAATCAAGCGGGCTGAATATCATCTAAGCTCACGCTTAGGGT
TGAAGCCAGGCATGCGCGTGTTGGATGTCGGGTGTGGAGTAGGTGGTCCA
ATGAGAAACATAGCCATCTTCTCAGGTGCGAAAATCGATGGGATCTCGAT
CAATGAGTACCAGGTGAAGATAGGCAACAAGTACAACGAACAACATGGCC
TCGCGGACGCCTGCAAGTCCCATCAAGGCGATTTTCAGAACCTCTCCGAT
CAGTGGGAGGAAGCTTCGTTCGATGCCGCTTTTGCCGTGGAAGCCACTTG
CCACTCCCCCGACAAGACCAAGTGCTTTTCCGAAGTCCTGAAAATTCTCA
AACCTGGCGGCCTGTTCGCGAATTATGAGTGGATCGTAACGGATAAATAC
TCCCCATCCAACCCCACGCACACACGCATCAAGGAAGGGATTGAGGTTGG
CAACGGGCTGCCCACCCTGGCAACGGCCGGGGAAGTGCTCGACGCAGTCC
GTGCAGCGGGCTTCGAGGTCGTTGACGCGTACGATGCGAATGCAGGCGTG
CATTCTCCGAATCAGATTCCCTGGTACGACACATTGACGGGAAAATTTAC
CTTGGGTGGTTTCAGGATGACCTGGCTGGGGAGGGTAATCACGCACCTGT
TTGTCTCTGTGCTGGAGCTGGTGCGGATTGCGCCGAGGGGGACGTCGAAG
ATCAGTTCCATTTTGAATGCAACGGCGATCGACTTGGTAGAGGGGGGAAA
GCGGGAGATTTTTACACCGAGTTTCTTTTTTGTGGCAAGAAAGCCGCAGT
AGATGCTGCAGCAAATCAACAAGACTTTGGAGCCACTCTTGGGCGAGCAC
AATGTTGCGGCAGCGGTGACGCTGAGTGTAATCGCCTTGACCATTGTCGT
TTTCCGCGTTCGACGACCATGCTCCTTCGACGTGATGAACATCATGAAGA
ACAGCGACTTCGAGGCGCATAAAGCCAAGGACGTGCAAACCTCAGTGGAT
CAGTACGCTACCCTTTTCACCGGCGCCCGGACCAAAATCGGCTCCATCTC
CAGCGCCGGCAGTATCGAGTCCCGGCAACAAAACTACAAAACATTGGTGG
GAAACTTCTACGATCTAGCCACCGACTTTTACGAGTACGGCTGGGGTCAG
TCCTTTCACTTTGCTCCTCGTTGGAAGGGAGAAGCGTTCAGAGAGTCAAT
CAAGCGGGCTGAATATCATCTAAGCTCACGCTTAGGGTTGAAGCCAGGCA
TGCGCGTGTTGGATGTCGGGTGTGGAGTAGGTGGTCCAATGAGAAACATA
GCCATCTTCTCAGGTGCGAAAATCGATGGGATCTCGATCAATGAGTACCA
GGTGAAGATAGGCAACAAGTACAACGAACAACATGGCCTCGCGGACGCCT
GCAAGTCCCATCAAGGCGATTTTCAGAACCTCTCCGATCAGTGGGAGGAA
GCTTCGTTCGATGCCGCTTTTGCCGTGGAAGCCACTTGCCACTCCCCCGA
CAAGACCAAGTGCTTTTCCGAAGTCCTGAAAATTCTCAAACCTGGCGGCC
TGTTCGCGAATTATGAGTGGATCGTAACGGATAAATACTCCCCATCCAAC
CCCACGCACACACGCATCAAGGAAGGGATTGAGGTTGGCAACGGGCTGCC
CACCCTGGCAACGGCCGGGGAAGTGCTCGACGCAGTCCGTGCAGCGGGCT
TCGAGGTCGTTGACGCGTACGATGCGAATGCAGGCGTGCATTCTCCGAAT
CAGATTCCCTGGTACGACACATTGACGGGAAAATTTACCTTGGGTGGTTT
CAGGATGACCTGGCTGGGGAGGGTAATCACGCACCTGTTTGTCTCTGTGC
TGGAGCTGGTGCGGATTGCGCCGAGGGGGACGTCGAAGATCAGTTCCATT
TTGAATGCAACGGCGATCGACTTGGTAGAGGGGGGAAAGCGGGAGATTTT
TACACCGAGTTTCTTTTTTGTGGCAAGAAAGCCGCAGTAG

Synonyms

Publications