jgi.p|Nanoce1779_2|590434, mRNA_5826 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590434
Unique Name	mRNA_5826
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3645
Alignment location	scaffold_11:658463..662429 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590520
Track	FilteredModels2
ProteinId	590434

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:658463..662429 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590434	gene_5826	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590434	mRNA_5826-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5826	CDS_5826	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:658463..662429-
coding sequence from alignment at scaffold_11:658463..662429-

mRNA sequence

>mRNA_5826 ID=mRNA_5826|Name=jgi.p|Nanoce1779_2|590434|organism=Nannochloropsis oceanica|type=mRNA|length=3645bp
AGCCATTCACCCCATTCTAGAGCACAGTCAGCCTATCCCCTCCGCAAAGT
GAACCATCATCAACTACAACCAGCAGCAAGGATGGCATCCCCTCCCGCGG
CTGGCATCAAGCGACGCCGTCAAGCACGTCAATCGGGCCCTTCCCTTCTC
GTCCTTGCTACGATGCTGACAGCAGCAGCTACCTCTGGCCTAGGCAGTGC
CGCCCCCCTGGGCAATGGCCAACGCGGCAGAAGCAGCCTTCCGAGAGGGC
CTCATCGGGTAGGAAAGGAGTGGATGAATGGAGGTTTGATATCGAGATGC
GTAATGTGTGTGACTTAAGAGTTATATAGCCCAGAGATACTCCTTACAAT
GGCACATTTCCCAGGAGAACGGAAGATAGAGAGGTGGAGGTAGTGTTAGA
GCGACTGCCTTCTTCCATCTCGCGTTTCCTCCCTCTCTTACCCGTTCTCC
CTTGTGGTGCCCATTAACTTACACGTACACATACATTCTCGATGTCTCTA
AATGTATCTTTCCATCACTCATCCCTCCTTCGCACCTCTACCACTCACAC
GAATGACCAAAAGCAGCCACCCATCGACGCCCGCGGCGGCAGCAGCTTTG
TACCTCCTCCTCCCCAACAATCTGGCACCCGGCATCCACGCAACAACGTC
AACGACGACCCTCCGCAAGAGCCACAACAGCGACAACAACAACAAGGAGG
GAATTACGCCGCAGCTGCTGCTGCCGGGGGTCCCGTGACCCGTCCGTGGG
GCCCTGTCTCATCTTCCTACAGCTATCAACGGTACTACACCTCGCAACCA
ACGTCCTCCTCGGCGGGGCGTCACGAGATCCTCTACCCACGCATCATGCG
TACAGTCGGCAACACGGGTGTGTGTATTTTGTTCATGATCCTCACTGCAC
GTGCCACGCACCTTTACGAGCTCGCGGACCAGATTTCTGGTGCCTTCCGC
CGAGCCCTCATCGTCTTACCTGTCGTCGGTCTCTTATGTGCGAACTTGGT
AGGCGTGCTCCTCTCTCTCGTGCAGTCTTTCTCACGAAATTCGCGGATCA
AGACGCGGCTAAAGGCAATTTTAACCATTAACGGACTGGCAGAATTGTTG
CAAGTGGCCTTCAACTCAGCCAGGTTGGTGTTAGGGAACGACAGATTCAC
CCCGCGAGAGGCGTATGTGGGAAGGATTTTTACGAGCGTTTGGATATTGA
CGATTTGTTATGCTTTTAGTACCAGTAGGTGGGACAGCTCGGGACAATTT
CAGTAAGGGGAGGAAGGGGGGAGGGAAACGGGAGAGGGAGAGGTACATGA
GGGTTTCTGGTGGTTTTGTGTTTTGTGTATGTATGTGATTGGAGCATGAG
GATGCGTCGCATGAAGGTTGTTGACGTGTCGAAGAAGCTTAACCTCGAGG
ACAAGATAACGTCAGATAAAACCTCCTTGTCTTTCACGACTTAAGAGTGG
TGCGTGGGAGGGGAAGGAGTAGGTCGTCGTTCGCTTCTCTTGAAAAACTT
TCAATCTTCCACTCTGCGCTATTCGACCTTTTTTGGTAGTGATTTTTTGT
ACAGCCCTAATTATGACTCAATAGCAAGACGAAACAATTAGCAAGACGAA
ACAAACGACGTCAGGATTGGTGGGAAACAAAAAAAAGTAAAAAGGACGAG
TATTTGCTGAGGGGGAAAATAAGCGTACTGTCTGCCACCAACTTATACCG
AGATCTACTGGGTCGGTGTAATCGCTCGATTTGCTGCTTCTGATGGCCTC
CTTTCGCATCTCCACCTCGCAATAGAGCTGGCGTACATCGGCGCACAGAT
GTCCTTGGCGCCGATCTCATTGGTCTTGATAATTGGTGGGTGGTGGTGCG
ATAGGTGCAACACGTCGTATGGTGTAGAACATGTCTTAAGGGGTGGGGAT
TGACACGACCTTAATCACTCGGGGACAGTGTCTAAGTTTGCTGCCAGCTC
GATCGCCCGGAAGGCGAGTCTCAAAAAGAGGAAAAAGGGGTTTTTATGAA
CGCCACAACCCGGGAATGCACTCCCAATTACTTATCGAATATGAAATATT
TTCTACTTGGGCCCGGTTGGAGGCTAGTTTGTGTCCCAAAATGAATTTTG
GACCCGATTCTCAAGGCATAGACTCCCCATAGAATCGTGGAAACGGTCAC
TCGCTTGATTCAAGAGCGAAGGAAAGAAGACGACGGCCTCCCATCCTCCT
GTCAACATACCGCCCTTTCAAAGGCACCCACACTTACATATACGCTCCAC
AGGTATAGGAGTCATCTGCCAGGCACCGTTGGCTTCAGCATTTAGCAGCT
CCGCTTTCCAACCTTACTTGCCGGCAGCGTCATCATCATCGCCGCCTTCC
ATCTTCCATAGCCCTGCCACTCCTCTTCACGCCACTGCCACAACCACCGC
TTCTCCCGACGCAAATACCAGCACTTGGCCATGGCCCGCCCGTTTCAGCA
GCCTAGATGGACGGGGAAGCGGATCCTGTCCCTGCAATTGTACCAGGAGG
TTGGTCGTCTCTTCGGTGGCCTTATCTCGTGGGAACATTTGCCATTCGTG
CTGCTTTATGTCGTCGTCCTCCAATGGTGCTACACTACCATGGGCGACCC
CTACCTCAAAGCCCTCGCAAAAGCTGAAAGCGAAGGCGTCGCGCTTCCTC
ACACCGTTGAACATCTGCGTGCTTCCGCTGCTGTTTTCCTCCTTAAGACT
ACACCTGACCCCTCTGCGCCTGAGAAAGAGACTCCCTTCTCGTTTTGGGG
AGACCCAGCGGTTGAGCCGCCAGTGCCTGATTATTATTTGCCTTCGAGAT
ATCTACCGGGGTTCTGGCCATGTTTTGCCTTGGGCGTGGTGATGATGCTG
CATGCCTTGGTGCTGCTTCTTCAGGTGTGGTTGGTTGACTTCCGGTGTTG
GGTGAGGTATCGCCCGGTGGGCTCGGTGGGGGAGGCAACGCATGTGAAGA
TCGTGCCGAGGGCCCATCGCGGGAAGAAGGAGTTGTTGGTCTTAGAGAAA
GGAGGGCTGGGAACGTGGTTTACCCTGCAGAGAAGGAAATATCTTTACGA
CTTCAAGGAGGGCCTTTTTAGTAAGGTCAGATGTAAAGTGGATTGGCCCC
TTGAGTTTTTTGGGAGGTGGAGAGGGTTCGCTTCGGATGCAGAGGTCATG
GATGCCCAGGAACGGTACGGGAAGAATTTGTTCGAAATCAGCTTGCCGGC
GTTTGCGGATCTGTACAAGCAGCAGTTGGTGAGCCCTTTTACAGTGTTCC
AGCTTTTTTGTGTCATATTGTGGTGTTTGGACTCCTATTGGCAGTACAGC
GTGTTCACCCTGTTTATGATATTTTCGTTCGAAGCGAGTGTGGTCATGCA
GCGGATTAAGAATTTGAATGTCTTGAAGGGGATGGATAATAAGATCTTAG
ATGTGTTGGTGTATCGGAATCGGAGGTGGGAGGTGACGAGGACGACGGAG
CTGGTGCCTGGGGATGTGTTTTCCTTGGTCAAGAGCAAGGAGAACGATGG
CATTGTCCCTTGTGATTGCCTGCTGCTGCGAGGGTCGGCTGTCGTGAACG
AAGCGACCTTGACGGGGGAGAGCATTCCGCAGATGAAGGATGCGGTTCCT
TGTCAGGCGGGGCAGGGAGGGGAAGGAGGGGGGAAGGGCGAGGTA

protein sequence of jgi.p|Nanoce1779_2|590434

>mRNA_5826-protein ID=mRNA_5826-protein|Name=jgi.p|Nanoce1779_2|590434|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MSLNVSFHHSSLLRTSTTHTNDQKQPPIDARGGSSFVPPPPQQSGTRHPR
NNVNDDPPQEPQQRQQQQGGNYAAAAAAGGPVTRPWGPVSSSYSYQRYYT
SQPTSSSAGRHEILYPRIMRTVGNTGVCILFMILTARATHLYELADQISG
AFRRALIVLPVVGLLCANLVGVLLSLVQSFSRNSRIKTRLKAILTINGLA
ELLQVAFNSARLVLGNDRFTPREAYVGRIFTSVWILTICYAFSTSRWDSS
GQFQ*

mRNA from alignment at scaffold_11:658463..662429-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5826 ID=mRNA_5826|Name=jgi.p|Nanoce1779_2|590434|organism=Nannochloropsis oceanica|type=mRNA|length=3967bp|location=Sequence derived from alignment at scaffold_11:658463..662429- (Nannochloropsis oceanica)
AGCCATTCACCCCATTCTAGAGCACAGTCAGCCTATCCCCTCCGCAAAGT
GAACCATCATCAACTACAACCAGCAGCAAGGATGGCATCCCCTCCCGCGG
CTGGCATCAAGCGACGCCGTCAAGCACGTCAATCGGGCCCTTCCCTTCTC
GTCCTTGCTACGATGCTGACAGCAGCAGCTACCTCTGGCCTAGGCAGTGC
CGCCCCCCTGGGCAATGGCCAACGCGGCAGAAGCAGCCTTCCGAGAGGGC
CTCATCGGGTAGGAAAGGAGTGGATGAATGGAGGTTTGATATCGAGATGC
GTAATGTGTGTGACTTAAGAGTTATATAGCCCAGAGATACTCCTTACAAT
GGCACATTTCCCAGGAGAACGGAAGATAGAGAGGTGGAGGTAGTGTTAGA
GCGACTGCCTTCTTCCATCTCGCGTTTCCTCCCTCTCTTACCCGTTCTCC
CTTGTGGTGCCCATTAACTTACACGTACACATACATTCTCGATGTCTCTA
AATGTATCTTTCCATCACTCATCCCTCCTTCGCACCTCTACCACTCACAC
GAATGACCAAAAGCAGCCACCCATCGACGCCCGCGGCGGCAGCAGCTTTG
TACCTCCTCCTCCCCAACAATCTGGCACCCGGCATCCACGCAACAACGTC
AACGACGACCCTCCGCAAGAGCCACAACAGCGACAACAACAACAAGGAGG
GAATTACGCCGCAGCTGCTGCTGCCGGGGGTCCCGTGACCCGTCCGTGGG
GCCCTGTCTCATCTTCCTACAGCTATCAACGGTACTACACCTCGCAACCA
ACGTCCTCCTCGGCGGGGCGTCACGAGATCCTCTACCCACGCATCATGCG
TACAGTCGGCAACACGGGTGTGTGTATTTTGTTCATGATCCTCACTGCAC
GTGCCACGCACCTTTACGAGCTCGCGGACCAGATTTCTGGTGCCTTCCGC
CGAGCCCTCATCGTCTTACCTGTCGTCGGTCTCTTATGTGCGAACTTGGT
AGGCGTGCTCCTCTCTCTCGTGCAGTCTTTCTCACGAAATTCGCGGATCA
AGACGCGGCTAAAGGCAATTTTAACCATTAACGGACTGGCAGAATTGTTG
CAAGTGGCCTTCAACTCAGCCAGGTTGGTGTTAGGGAACGACAGATTCAC
CCCGCGAGAGGCGTATGTGGGAAGGATTTTTACGAGCGTTTGGATATTGA
CGATTTGTTATGCTTTTAGTACCAGTAGGTGGGACAGCTCGGGACAATTT
CAGTAAGGGGAGGAAGGGGGGAGGGAAACGGGAGAGGGAGAGGTACATGA
GGGTTTCTGGTGGTTTTGTGTTTTGTGTATGTATGTGATTGGAGCATGAG
GATGCGTCGCATGAAGGTTGTTGACGTGTCGAAGAAGCTTAACCTCGAGG
ACAAGATAACGTCAGATAAAACCTCCTTGTCTTTCACGACTTAAGAGTGG
TGCGTGGGAGGGGAAGGAGTAGGTCGTCGTTCGCTTCTCTTGAAAAACTT
TCAATCTTCCACTCTGCGCTATTCGACCTTTTTTGGTAGTGATTTTTTGT
ACAGCCCTAATTATGACTCAATAGCAAGACGAAACAATTAGCAAGACGAA
ACAAACGACGTCAGGATTGGTGGGAAACAAAAAAAAGTAAAAAGGACGAG
TATTTGCTGAGGGGGAAAATAAGCGTACTGTCTGCCACCAACTTATACCG
AGATCTACTGGGTCGGTGTAATCGCTCGATTTGCTGCTTCTGATGGCCTC
CTTTCGCATCTCCACCTCGCAATAGAGCTGGCGTACATCGGCGCACAGAT
GTCCTTGGCGCCGATCTCATTGGTCTTGATAATTGGTGGGTGGTGGTGCG
ATAGGTGCAACACGTCGTATGGTGTAGAACATGTCTTAAGGGGTGGGGAT
TGACACGACCTTAATCACTCGGGGACAGTGTCTAAGTTTGCTGCCAGCTC
GATCGCCCGGAAGGCGAGTCTCAAAAAGAGGAAAAAGGGGTTTTTATGAA
CGCCACAACCCGGGAATGCACTCCCAATTACTTATCGAATATGAAATATT
TTCTACTTGGGCCCGGTTGGAGGCTAGTTTGTGTCCCAAAATGAATTTTG
GACCCGATTCTCAAGGCATAGACTCCCCATAGAATCGTGGAAACGGTCAC
TCGCTTGATTCAAGAGCGAAGGAAAGAAGACGACGGCCTCCCATCCTCCT
GTCAACATACCGCCCTTTCAAAGGCACCCACACTTACATATACGCTCCAC
AGGTATAGGAGTCATCTGCCAGGCACCGTTGGCTTCAGCATTTAGCAGCT
CCGCTTTCCAACCTTACTTGCCGGCAGCGTCATCATCATCGCCGCCTTCC
ATCTTCCATAGCCCTGCCACTCCTCTTCACGCCACTGCCACAACCACCGC
TTCTCCCGACGCAAATACCAGCACTTGGCCATGGCCCGCCCGTTTCAGCA
GCCTAGATGGACGGGGAAGCGGATCCTGTCCCTGCAATTGTACCAGGAGG
TTGGTCGTCTCTTCGGTGGCCTTATCTCGTGGGAACATTTGCCATTCGTG
CTGCTTTATGTCGTCGTCCTCCAATGGGTACGTTTATGATTCCTTCTTCT
TCTTCTTCTTCTATTACTTCTCCCTCCCTCTTCTCTGTCTCCCCACTTCG
ATTTTCGCTTCGTATTGCCACCTGTAATTTCGTGTGGCGCCCCTCAATGC
AACATCTAATGTTGCATCTCTCATTCCTCTGTTCAATAGTACGTCCCGTG
GGCACGCGCACCGTGCAATCATTCTCGTACCCTTCGATTGACTTGACCAA
TAACGACTTTTTCTTTTATGTTCCAGCAAGGCCTTTATTTGTTACCCACT
GTAGCCGCCTCATTCCTCCTCTATCCCCCTCTCCGTCCCCCCCTCATAGT
GCTACACTACCATGGGCGACCCCTACCTCAAAGCCCTCGCAAAAGCTGAA
AGCGAAGGCGTCGCGCTTCCTCACACCGTTGAACATCTGCGTGCTTCCGC
TGCTGTTTTCCTCCTTAAGACTACACCTGACCCCTCTGCGCCTGAGAAAG
AGACTCCCTTCTCGTTTTGGGGAGACCCAGCGGTTGAGCCGCCAGTGCCT
GATTATTATTTGCCTTCGAGATATCTACCGGGGTTCTGGCCATGTTTTGC
CTTGGGCGTGGTGATGATGCTGCATGCCTTGGTGCTGCTTCTTCAGGTGT
GGTTGGTTGACTTCCGGTGTTGGGTGAGGTATCGCCCGGTGGGCTCGGTG
GGGGAGGCAACGCATGTGAAGATCGTGCCGAGGGCCCATCGCGGGAAGAA
GGAGTTGTTGGTCTTAGAGAAAGGAGGGCTGGGAACGTGGTTTACCCTGC
AGAGAAGGAAATATCTTTACGACTTCAAGGAGGGCCTTTTTAGTAAGGTC
AGATGTAAAGTGGATTGGCCCCTTGAGTTTTTTGGGAGGTGGAGAGGGTT
CGCTTCGGATGCAGAGGTCATGGATGCCCAGGAACGGTACGGGAAGAATT
TGTTCGAAATCAGCTTGCCGGCGTTTGCGGATCTGTACAAGCAGCAGTTG
GTGAGCCCTTTTACAGTGTTCCAGCTTTTTTGTGTCATATTGTGGTGTTT
GGACTCCTATTGGCAGTACAGCGTGTTCACCCTGTTTATGATATTTTCGT
TCGAAGCGAGTGTGGTCATGCAGCGGATTAAGAATTTGAATGTCTTGAAG
GGGATGGATAATAAGATCTTAGATGTGTTGGTGTATCGGAATCGGAGGTG
GGAGGTGACGAGGACGACGGAGCTGGTGCCTGGGGATGTGTTTTCCTTGG
TCAAGAGCAAGGAGAACGATGGCATTGTCCCTTGTGATTGCCTGCTGCTG
CGAGGGTCGGCTGTCGTGAACGAAGCGACCTTGACGGGGGAGAGCATTCC
GCAGATGAAGGATGCGGTTCCTTGTCAGGCGGGGCAGGGAGGGGAAGGAG
GGGGGAAGGGCGAGGTA

Coding sequence (CDS) from alignment at scaffold_11:658463..662429-

>mRNA_5826 ID=mRNA_5826|Name=jgi.p|Nanoce1779_2|590434|organism=Nannochloropsis oceanica|type=CDS|length=765bp|location=Sequence derived from alignment at scaffold_11:658463..662429- (Nannochloropsis oceanica)
ATGTCTCTAAATGTATCTTTCCATCACTCATCCCTCCTTCGCACCTCTAC
CACTCACACGAATGACCAAAAGCAGCCACCCATCGACGCCCGCGGCGGCA
GCAGCTTTGTACCTCCTCCTCCCCAACAATCTGGCACCCGGCATCCACGC
AACAACGTCAACGACGACCCTCCGCAAGAGCCACAACAGCGACAACAACA
ACAAGGAGGGAATTACGCCGCAGCTGCTGCTGCCGGGGGTCCCGTGACCC
GTCCGTGGGGCCCTGTCTCATCTTCCTACAGCTATCAACGGTACTACACC
TCGCAACCAACGTCCTCCTCGGCGGGGCGTCACGAGATCCTCTACCCACG
CATCATGCGTACAGTCGGCAACACGGGTGTGTGTATTTTGTTCATGATCC
TCACTGCACGTGCCACGCACCTTTACGAGCTCGCGGACCAGATTTCTGGT
GCCTTCCGCCGAGCCCTCATCGTCTTACCTGTCGTCGGTCTCTTATGTGC
GAACTTGGTAGGCGTGCTCCTCTCTCTCGTGCAGTCTTTCTCACGAAATT
CGCGGATCAAGACGCGGCTAAAGGCAATTTTAACCATTAACGGACTGGCA
GAATTGTTGCAAGTGGCCTTCAACTCAGCCAGGTTGGTGTTAGGGAACGA
CAGATTCACCCCGCGAGAGGCGTATGTGGGAAGGATTTTTACGAGCGTTT
GGATATTGACGATTTGTTATGCTTTTAGTACCAGTAGGTGGGACAGCTCG
GGACAATTTCAGTAA

Synonyms

Publications