jgi.p|Nanoce1779_2|590425, mRNA_5824 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590425
Unique Name	mRNA_5824
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2314
Alignment location	scaffold_11:652180..654493 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590511
Track	FilteredModels2
ProteinId	590425

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:652180..654493 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590425	gene_5824	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590425	mRNA_5824-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5824	CDS_5824	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:652180..654493+
coding sequence from alignment at scaffold_11:652180..654493+

mRNA sequence

>mRNA_5824 ID=mRNA_5824|Name=jgi.p|Nanoce1779_2|590425|organism=Nannochloropsis oceanica|type=mRNA|length=2314bp
AGCAGCCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATAGTTTCGG
CCTTAACATTCAGCAGCAGCAGAAATGGGTGACAGCTGGGAGGACCAACA
AGGAGCTGGCGCGCCCAAGCTCAATGTCGGGGCCAAGCCTTTTGTGTTCA
ACCCTGGAGCTCGTTCCTTTACGCCTGGTGGCGGTGGGAGAGGAGCAACG
ACGGAGGATATGACGGCTCAGATGGCCGCGGCTTCGATTGCGGACCCCGC
TGCTAGTAGCAGCAGTGTCATGGAGGAAGACGACGAGGGGGACGACGAGA
ACGACCCGTTGTGGCAGGCAGTTTTCAAGATGGCGGGTGGGGATAGGGCG
AAGACAGAAAAGATGTTAGAGGACCCCGATTCATTGATGCAATACCCGGA
GATCCGGGCGTTGCTCGAAGGAGTCGAAGGAGGAGGAGAAGGGAGCACGA
CTGCTGCGATGGACGCGGAGCTCAGCAGGAAGGCAGAGCCCCGCATGCCC
GTTGCCACGGCGGCTGCGCCAGCGAGCAGCAGCAGCAGCATCAGCAGCAG
CAAGATGTCGTCGGGGTCCAGCCCTTTGGTTGCAGCGGCGGAGGATGATG
ACGATGCAGGCGGATCGTCAGAGCTGCAGGATGAAGACCCTCGGGAGCAC
TTGAATTTGGTATTTATCGGTCATGTCGACGCGGGGAAGTCGACGATGTC
AGGGCAGCTTCTCTACCTAACGGGCCAAGTGGATAAGCGCACCATCGAGC
GGTTCGAAAAGGAGGCAAAGCAACTCAACCGTGAAAGTTGGTTTTTAGCA
TTCATCATGGATACAAACGAGGAGGAACGCGCGAAGGGGAAGACCGTGGA
AGTGGGTCGGGCACACTTCGATACGGATGCGAAGCGCTACACTATTATGG
ATGCGCCTGGTCACAAGAATTATGTGCCGAATATGATTGCGGGGGCCGTG
CAAGCTGATGTAGGGATTTTGGTTATTTCTGCAAGGAGGGGGGAGTTTGA
GACGGGCTTCGAGCGGGGGGGTCAGACGCGGGAGCATGCTTTGCTGGCCA
AGACGTTGGGAGTGCGGTACCTGGTGGTGGTAATCAACAAGATGGACGAT
TCCACGGTAAAGTGGTCGAAAGACCGGTTCGATGAATGCGTGAGTAAGCT
CAAACCCTTCCTCAAATCATGTGGGTATGCTCCGAAAAAGGACGTGAAAT
TCATCCCTGTGTCGGGTCTGACCGGAGATAACATTCAGAAGCCCGTGGCG
GCATCGACGTGTCCATGGTGGGAGGGGCTGTACGTGGCAGGGGAGCACAA
CACGGCCGAGCCGACGTTGATTTCATGTTTAGATGCCTTGTGTATTGAGG
GCAGAGAGCCCAGCGCGCCGTTGCGGATCCCAGTCTTAGACCGGTACCAG
GATAGGGGAACGATCTCCCTGGGAAAGGTGGAGAGTGGGAGTGTGAAGGT
AGGACAGAAAGTGTTGGTGATGCCCACGAAGAACACGTATGAGGTGCAAT
CGATTTTGATCAACGACCTGCCCGTGCGTTCAGCGAAACCAGGGGAGAAT
GTCAAGGTCAAGTTGGGGGGGGCGGCGGTGGAGGATGTTCAGAAAGGGTA
CGTGCTGTGCTCGGTCGGGGAGCCATGTCATGCAGCGACGAGGTTTGATT
GTCAGTTAGCCTTGGTGGACTTGTTGGAGCATCGACCTATTTTCAGCCCG
GGGTATACGTGTGTGGCGCATTTGCATACGGCTGAGGAGGAGGTGACGGT
CATGGACTTGTTGTCAATTGAAGATCGGAAGTCAGGAGAGGTGAAGAAGA
AGCCCCGGTTTGCGAGGCAGGGGAATGTGATTACGTGTCGGATGCGGACG
AAACGGGAGGTGTGTTGTGAGGCGTTTAAGGAGATGGCACAGTTGGGGCG
GTTGACGTTGAGGGACGAGGGAAAGACGATTGCGATTGGCAAGATTTTAA
CAGTTTTGCCAGGCAAAGTCGCCAAGTGATTGGGAAGAGGGGGACGATAG
ATGGAGCGTAAGGAGGAAGAGAACAGAAGGTCTGGAGGAGGTGTCGAAGG
GGAGAAAATGAGCATTGGGCACGCATTCGGGGAAATTAAATAAACCCCAA
GAAGGAAAGTCAGCTTGAAGATGAAAAGAAAGACAATGGAGAAGGCAGCC
AATATGCTCTTTTGTTGTCAGGGAGTTTTCACTTAGTTTTGAGCAGAGAG
ATAGAGACCATGACATGTTGCAGCAATATTTCAGAGCACATCAAAAATAG
TAACGGAGAAAACAGAGGCATGAAGCAAGAGGAGGTTAAGAAAAAGAAGT
ACGTCCCATTTGGC

protein sequence of jgi.p|Nanoce1779_2|590425

>mRNA_5824-protein ID=mRNA_5824-protein|Name=jgi.p|Nanoce1779_2|590425|organism=Nannochloropsis oceanica|type=polypeptide|length=635bp
MGDSWEDQQGAGAPKLNVGAKPFVFNPGARSFTPGGGGRGATTEDMTAQM
AAASIADPAASSSSVMEEDDEGDDENDPLWQAVFKMAGGDRAKTEKMLED
PDSLMQYPEIRALLEGVEGGGEGSTTAAMDAELSRKAEPRMPVATAAAPA
SSSSSISSSKMSSGSSPLVAAAEDDDDAGGSSELQDEDPREHLNLVFIGH
VDAGKSTMSGQLLYLTGQVDKRTIERFEKEAKQLNRESWFLAFIMDTNEE
ERAKGKTVEVGRAHFDTDAKRYTIMDAPGHKNYVPNMIAGAVQADVGILV
ISARRGEFETGFERGGQTREHALLAKTLGVRYLVVVINKMDDSTVKWSKD
RFDECVSKLKPFLKSCGYAPKKDVKFIPVSGLTGDNIQKPVAASTCPWWE
GLYVAGEHNTAEPTLISCLDALCIEGREPSAPLRIPVLDRYQDRGTISLG
KVESGSVKVGQKVLVMPTKNTYEVQSILINDLPVRSAKPGENVKVKLGGA
AVEDVQKGYVLCSVGEPCHAATRFDCQLALVDLLEHRPIFSPGYTCVAHL
HTAEEEVTVMDLLSIEDRKSGEVKKKPRFARQGNVITCRMRTKREVCCEA
FKEMAQLGRLTLRDEGKTIAIGKILTVLPGKVAK*

mRNA from alignment at scaffold_11:652180..654493+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5824 ID=mRNA_5824|Name=jgi.p|Nanoce1779_2|590425|organism=Nannochloropsis oceanica|type=mRNA|length=2314bp|location=Sequence derived from alignment at scaffold_11:652180..654493+ (Nannochloropsis oceanica)
AGCAGCCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATAGTTTCGG
CCTTAACATTCAGCAGCAGCAGAAATGGGTGACAGCTGGGAGGACCAACA
AGGAGCTGGCGCGCCCAAGCTCAATGTCGGGGCCAAGCCTTTTGTGTTCA
ACCCTGGAGCTCGTTCCTTTACGCCTGGTGGCGGTGGGAGAGGAGCAACG
ACGGAGGATATGACGGCTCAGATGGCCGCGGCTTCGATTGCGGACCCCGC
TGCTAGTAGCAGCAGTGTCATGGAGGAAGACGACGAGGGGGACGACGAGA
ACGACCCGTTGTGGCAGGCAGTTTTCAAGATGGCGGGTGGGGATAGGGCG
AAGACAGAAAAGATGTTAGAGGACCCCGATTCATTGATGCAATACCCGGA
GATCCGGGCGTTGCTCGAAGGAGTCGAAGGAGGAGGAGAAGGGAGCACGA
CTGCTGCGATGGACGCGGAGCTCAGCAGGAAGGCAGAGCCCCGCATGCCC
GTTGCCACGGCGGCTGCGCCAGCGAGCAGCAGCAGCAGCATCAGCAGCAG
CAAGATGTCGTCGGGGTCCAGCCCTTTGGTTGCAGCGGCGGAGGATGATG
ACGATGCAGGCGGATCGTCAGAGCTGCAGGATGAAGACCCTCGGGAGCAC
TTGAATTTGGTATTTATCGGTCATGTCGACGCGGGGAAGTCGACGATGTC
AGGGCAGCTTCTCTACCTAACGGGCCAAGTGGATAAGCGCACCATCGAGC
GGTTCGAAAAGGAGGCAAAGCAACTCAACCGTGAAAGTTGGTTTTTAGCA
TTCATCATGGATACAAACGAGGAGGAACGCGCGAAGGGGAAGACCGTGGA
AGTGGGTCGGGCACACTTCGATACGGATGCGAAGCGCTACACTATTATGG
ATGCGCCTGGTCACAAGAATTATGTGCCGAATATGATTGCGGGGGCCGTG
CAAGCTGATGTAGGGATTTTGGTTATTTCTGCAAGGAGGGGGGAGTTTGA
GACGGGCTTCGAGCGGGGGGGTCAGACGCGGGAGCATGCTTTGCTGGCCA
AGACGTTGGGAGTGCGGTACCTGGTGGTGGTAATCAACAAGATGGACGAT
TCCACGGTAAAGTGGTCGAAAGACCGGTTCGATGAATGCGTGAGTAAGCT
CAAACCCTTCCTCAAATCATGTGGGTATGCTCCGAAAAAGGACGTGAAAT
TCATCCCTGTGTCGGGTCTGACCGGAGATAACATTCAGAAGCCCGTGGCG
GCATCGACGTGTCCATGGTGGGAGGGGCTGTACGTGGCAGGGGAGCACAA
CACGGCCGAGCCGACGTTGATTTCATGTTTAGATGCCTTGTGTATTGAGG
GCAGAGAGCCCAGCGCGCCGTTGCGGATCCCAGTCTTAGACCGGTACCAG
GATAGGGGAACGATCTCCCTGGGAAAGGTGGAGAGTGGGAGTGTGAAGGT
AGGACAGAAAGTGTTGGTGATGCCCACGAAGAACACGTATGAGGTGCAAT
CGATTTTGATCAACGACCTGCCCGTGCGTTCAGCGAAACCAGGGGAGAAT
GTCAAGGTCAAGTTGGGGGGGGCGGCGGTGGAGGATGTTCAGAAAGGGTA
CGTGCTGTGCTCGGTCGGGGAGCCATGTCATGCAGCGACGAGGTTTGATT
GTCAGTTAGCCTTGGTGGACTTGTTGGAGCATCGACCTATTTTCAGCCCG
GGGTATACGTGTGTGGCGCATTTGCATACGGCTGAGGAGGAGGTGACGGT
CATGGACTTGTTGTCAATTGAAGATCGGAAGTCAGGAGAGGTGAAGAAGA
AGCCCCGGTTTGCGAGGCAGGGGAATGTGATTACGTGTCGGATGCGGACG
AAACGGGAGGTGTGTTGTGAGGCGTTTAAGGAGATGGCACAGTTGGGGCG
GTTGACGTTGAGGGACGAGGGAAAGACGATTGCGATTGGCAAGATTTTAA
CAGTTTTGCCAGGCAAAGTCGCCAAGTGATTGGGAAGAGGGGGACGATAG
ATGGAGCGTAAGGAGGAAGAGAACAGAAGGTCTGGAGGAGGTGTCGAAGG
GGAGAAAATGAGCATTGGGCACGCATTCGGGGAAATTAAATAAACCCCAA
GAAGGAAAGTCAGCTTGAAGATGAAAAGAAAGACAATGGAGAAGGCAGCC
AATATGCTCTTTTGTTGTCAGGGAGTTTTCACTTAGTTTTGAGCAGAGAG
ATAGAGACCATGACATGTTGCAGCAATATTTCAGAGCACATCAAAAATAG
TAACGGAGAAAACAGAGGCATGAAGCAAGAGGAGGTTAAGAAAAAGAAGT
ACGTCCCATTTGGC

Coding sequence (CDS) from alignment at scaffold_11:652180..654493+

>mRNA_5824 ID=mRNA_5824|Name=jgi.p|Nanoce1779_2|590425|organism=Nannochloropsis oceanica|type=CDS|length=1905bp|location=Sequence derived from alignment at scaffold_11:652180..654493+ (Nannochloropsis oceanica)
ATGGGTGACAGCTGGGAGGACCAACAAGGAGCTGGCGCGCCCAAGCTCAA
TGTCGGGGCCAAGCCTTTTGTGTTCAACCCTGGAGCTCGTTCCTTTACGC
CTGGTGGCGGTGGGAGAGGAGCAACGACGGAGGATATGACGGCTCAGATG
GCCGCGGCTTCGATTGCGGACCCCGCTGCTAGTAGCAGCAGTGTCATGGA
GGAAGACGACGAGGGGGACGACGAGAACGACCCGTTGTGGCAGGCAGTTT
TCAAGATGGCGGGTGGGGATAGGGCGAAGACAGAAAAGATGTTAGAGGAC
CCCGATTCATTGATGCAATACCCGGAGATCCGGGCGTTGCTCGAAGGAGT
CGAAGGAGGAGGAGAAGGGAGCACGACTGCTGCGATGGACGCGGAGCTCA
GCAGGAAGGCAGAGCCCCGCATGCCCGTTGCCACGGCGGCTGCGCCAGCG
AGCAGCAGCAGCAGCATCAGCAGCAGCAAGATGTCGTCGGGGTCCAGCCC
TTTGGTTGCAGCGGCGGAGGATGATGACGATGCAGGCGGATCGTCAGAGC
TGCAGGATGAAGACCCTCGGGAGCACTTGAATTTGGTATTTATCGGTCAT
GTCGACGCGGGGAAGTCGACGATGTCAGGGCAGCTTCTCTACCTAACGGG
CCAAGTGGATAAGCGCACCATCGAGCGGTTCGAAAAGGAGGCAAAGCAAC
TCAACCGTGAAAGTTGGTTTTTAGCATTCATCATGGATACAAACGAGGAG
GAACGCGCGAAGGGGAAGACCGTGGAAGTGGGTCGGGCACACTTCGATAC
GGATGCGAAGCGCTACACTATTATGGATGCGCCTGGTCACAAGAATTATG
TGCCGAATATGATTGCGGGGGCCGTGCAAGCTGATGTAGGGATTTTGGTT
ATTTCTGCAAGGAGGGGGGAGTTTGAGACGGGCTTCGAGCGGGGGGGTCA
GACGCGGGAGCATGCTTTGCTGGCCAAGACGTTGGGAGTGCGGTACCTGG
TGGTGGTAATCAACAAGATGGACGATTCCACGGTAAAGTGGTCGAAAGAC
CGGTTCGATGAATGCGTGAGTAAGCTCAAACCCTTCCTCAAATCATGTGG
GTATGCTCCGAAAAAGGACGTGAAATTCATCCCTGTGTCGGGTCTGACCG
GAGATAACATTCAGAAGCCCGTGGCGGCATCGACGTGTCCATGGTGGGAG
GGGCTGTACGTGGCAGGGGAGCACAACACGGCCGAGCCGACGTTGATTTC
ATGTTTAGATGCCTTGTGTATTGAGGGCAGAGAGCCCAGCGCGCCGTTGC
GGATCCCAGTCTTAGACCGGTACCAGGATAGGGGAACGATCTCCCTGGGA
AAGGTGGAGAGTGGGAGTGTGAAGGTAGGACAGAAAGTGTTGGTGATGCC
CACGAAGAACACGTATGAGGTGCAATCGATTTTGATCAACGACCTGCCCG
TGCGTTCAGCGAAACCAGGGGAGAATGTCAAGGTCAAGTTGGGGGGGGCG
GCGGTGGAGGATGTTCAGAAAGGGTACGTGCTGTGCTCGGTCGGGGAGCC
ATGTCATGCAGCGACGAGGTTTGATTGTCAGTTAGCCTTGGTGGACTTGT
TGGAGCATCGACCTATTTTCAGCCCGGGGTATACGTGTGTGGCGCATTTG
CATACGGCTGAGGAGGAGGTGACGGTCATGGACTTGTTGTCAATTGAAGA
TCGGAAGTCAGGAGAGGTGAAGAAGAAGCCCCGGTTTGCGAGGCAGGGGA
ATGTGATTACGTGTCGGATGCGGACGAAACGGGAGGTGTGTTGTGAGGCG
TTTAAGGAGATGGCACAGTTGGGGCGGTTGACGTTGAGGGACGAGGGAAA
GACGATTGCGATTGGCAAGATTTTAACAGTTTTGCCAGGCAAAGTCGCCA
AGTGA

Synonyms

Publications