jgi.p|Nanoce1779_2|590408, mRNA_5819 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590408
Unique NamemRNA_5819
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1799
Alignment locationscaffold_11:639900..641698 -

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Properties
Property NameValue
TranscriptId590494
TrackFilteredModels2
ProteinId590408
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:639900..641698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590408gene_5819Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590408mRNA_5819-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5819CDS_5819Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5819 ID=mRNA_5819|Name=jgi.p|Nanoce1779_2|590408|organism=Nannochloropsis oceanica|type=mRNA|length=1799bp
CAGATCACAGTCAAATAGTATGTCGCGCGTGTGCTTTGCCCTCCTTGGAT
TGCTGGCCTCTCAGACCAGCGCTTTCGTCATCCCCACGACCCACATCATC
CGTGCTCCCAAGGCCTCCACCACCCAGCTTGCCGCGGTACGTACCGAGTG
CCCAATGCCCTTTCGCTCTCGTCTAGATCTACGAAGGGCTGATTGGAGAT
GTCGCGATATCAATCTATTTGTAGATGAGCTTATTTACCTTTTATGGCCT
CAAGCAATGTGGTGGTCGGGAGGTGGTTGTGTATGGACATCGTCGTGTGC
CACGCACTGCCTCCAAGCTGGAGCTGCCCATTTTTCGATCTTCAGTGCGT
CTCGTTTAGACAAGACAAACCATCATAAACCTAGATCATCCAATCCCGTG
CGCTCAGGCCCCTTGATACACTCCCATATTTCTGGTGGCCCAGTTCATCC
TTTCACCCCCATCCAGTTATCCACCCGAGTGTCCCCCATCCCGCCATCCT
ATATCTCCTCAATCCCACACATCCCCAGACCACCATGGCCGCCGATGTCA
AGCAAAAGCCCCATGGCGGAAAACTTGTGGATTTGATGGTGGAGGGTGCT
GCTGCCGAAGCCGCAATTGCCCGCGCTACATCCGAAGTTGAGCTCTCTGA
TCGCCAGCTGTGCGACGTGGAGCTGATCGTGAACGGGGGCTTCTCCCCCC
TGACCGGCTTTATGAATGAGGAAGAGTACAAGAGCGTGGTGGAGACACAC
CGCCTGCCCAATGGCCTCTTGTTTGGCCTGCCCGTTGTGTTCGACACGGA
CAGCGAGACCATTCAACCCGGGGCTAGCATTCTCCTTAAGCAGGGGGATC
GCCCCATCGCAGTTTTTGATGTATCTGCCAAGTACACCCCCAACAAGCCT
TTGGAAGCCCTGAAATGCTACGGAACCTCCTCACTGGAGCATCCTGGTGT
CCAAATGATTGCGATGGAACGTGGCAAATACTACCTCGGAGGGCAGCTCA
CGGGTTTGAACCTCCCTGTCCGCGATTTCAACTGCAAGACTCCCAAGGAA
GTGCGTGCGGGCCTTCCCAAGGCTAAGGACGTGGTGGCGTTTCAATGCCG
CAACCCCGTCCACCGAGCACACTACGAGCTCTTCACTCGTGCACTGGACG
CCCCTAACGTCGAGAAGGATGGGATCGTCCTCGTCCACCCTACCTGTGGT
CCAACCCAAGCCGATGATATTCCGGGTATCGTCCGTTACCGCACGTACGA
GGTGCTGAAGGAAGAGACTGCAAACCCCCGCATCGAGTGGGCGTATCTCC
CTTACTCCATGCACATGGCCGGTCCTCGTGAGGCACTGCAACACATGATG
ATTAGGAAGAACTATGGATGCACTCATTTCATCATCGGTCGGGACATGGC
CGGCAGCAAGAGCTCGGTGTCTGGGGAGGATTTCTATGGCGCGTATGACG
CCCAAAACTTCGCCAAATCGATCAGCAAGGAGCTGGGGGTTGATACCGTG
CCCAGCCTGGACCTGGTGTTTACGGAGGAGGAGGGGTACGTGACAGCGGA
GAGGGCAAAGGAGGCGAATTTGAGTATTAAGAAGTTGTCGGGCACCAAGT
TTAGGCAAATGCTCCGTGCGGGGGATGATATTCCGGAGTGGTTTGCATTT
AAATCGGTCGTGAAGGTGTTGAGGGAGACGTAAGGGCGAGGGGCGTGAGA
GAGAGTGGGAAGGAGAGGGAAGGAGAGAAGGAGAGAAGGAGGGAGGGAGG
GAGGCGAGGGGATGGTGGGAAGTGAGTGGTGGCAGCGGCGCGCCATCAA
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protein sequence of jgi.p|Nanoce1779_2|590408

>mRNA_5819-protein ID=mRNA_5819-protein|Name=jgi.p|Nanoce1779_2|590408|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MAADVKQKPHGGKLVDLMVEGAAAEAAIARATSEVELSDRQLCDVELIVN
GGFSPLTGFMNEEEYKSVVETHRLPNGLLFGLPVVFDTDSETIQPGASIL
LKQGDRPIAVFDVSAKYTPNKPLEALKCYGTSSLEHPGVQMIAMERGKYY
LGGQLTGLNLPVRDFNCKTPKEVRAGLPKAKDVVAFQCRNPVHRAHYELF
TRALDAPNVEKDGIVLVHPTCGPTQADDIPGIVRYRTYEVLKEETANPRI
EWAYLPYSMHMAGPREALQHMMIRKNYGCTHFIIGRDMAGSKSSVSGEDF
YGAYDAQNFAKSISKELGVDTVPSLDLVFTEEEGYVTAERAKEANLSIKK
LSGTKFRQMLRAGDDIPEWFAFKSVVKVLRET*
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mRNA from alignment at scaffold_11:639900..641698-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5819 ID=mRNA_5819|Name=jgi.p|Nanoce1779_2|590408|organism=Nannochloropsis oceanica|type=mRNA|length=1799bp|location=Sequence derived from alignment at scaffold_11:639900..641698- (Nannochloropsis oceanica)
CAGATCACAGTCAAATAGTATGTCGCGCGTGTGCTTTGCCCTCCTTGGAT
TGCTGGCCTCTCAGACCAGCGCTTTCGTCATCCCCACGACCCACATCATC
CGTGCTCCCAAGGCCTCCACCACCCAGCTTGCCGCGGTACGTACCGAGTG
CCCAATGCCCTTTCGCTCTCGTCTAGATCTACGAAGGGCTGATTGGAGAT
GTCGCGATATCAATCTATTTGTAGATGAGCTTATTTACCTTTTATGGCCT
CAAGCAATGTGGTGGTCGGGAGGTGGTTGTGTATGGACATCGTCGTGTGC
CACGCACTGCCTCCAAGCTGGAGCTGCCCATTTTTCGATCTTCAGTGCGT
CTCGTTTAGACAAGACAAACCATCATAAACCTAGATCATCCAATCCCGTG
CGCTCAGGCCCCTTGATACACTCCCATATTTCTGGTGGCCCAGTTCATCC
TTTCACCCCCATCCAGTTATCCACCCGAGTGTCCCCCATCCCGCCATCCT
ATATCTCCTCAATCCCACACATCCCCAGACCACCATGGCCGCCGATGTCA
AGCAAAAGCCCCATGGCGGAAAACTTGTGGATTTGATGGTGGAGGGTGCT
GCTGCCGAAGCCGCAATTGCCCGCGCTACATCCGAAGTTGAGCTCTCTGA
TCGCCAGCTGTGCGACGTGGAGCTGATCGTGAACGGGGGCTTCTCCCCCC
TGACCGGCTTTATGAATGAGGAAGAGTACAAGAGCGTGGTGGAGACACAC
CGCCTGCCCAATGGCCTCTTGTTTGGCCTGCCCGTTGTGTTCGACACGGA
CAGCGAGACCATTCAACCCGGGGCTAGCATTCTCCTTAAGCAGGGGGATC
GCCCCATCGCAGTTTTTGATGTATCTGCCAAGTACACCCCCAACAAGCCT
TTGGAAGCCCTGAAATGCTACGGAACCTCCTCACTGGAGCATCCTGGTGT
CCAAATGATTGCGATGGAACGTGGCAAATACTACCTCGGAGGGCAGCTCA
CGGGTTTGAACCTCCCTGTCCGCGATTTCAACTGCAAGACTCCCAAGGAA
GTGCGTGCGGGCCTTCCCAAGGCTAAGGACGTGGTGGCGTTTCAATGCCG
CAACCCCGTCCACCGAGCACACTACGAGCTCTTCACTCGTGCACTGGACG
CCCCTAACGTCGAGAAGGATGGGATCGTCCTCGTCCACCCTACCTGTGGT
CCAACCCAAGCCGATGATATTCCGGGTATCGTCCGTTACCGCACGTACGA
GGTGCTGAAGGAAGAGACTGCAAACCCCCGCATCGAGTGGGCGTATCTCC
CTTACTCCATGCACATGGCCGGTCCTCGTGAGGCACTGCAACACATGATG
ATTAGGAAGAACTATGGATGCACTCATTTCATCATCGGTCGGGACATGGC
CGGCAGCAAGAGCTCGGTGTCTGGGGAGGATTTCTATGGCGCGTATGACG
CCCAAAACTTCGCCAAATCGATCAGCAAGGAGCTGGGGGTTGATACCGTG
CCCAGCCTGGACCTGGTGTTTACGGAGGAGGAGGGGTACGTGACAGCGGA
GAGGGCAAAGGAGGCGAATTTGAGTATTAAGAAGTTGTCGGGCACCAAGT
TTAGGCAAATGCTCCGTGCGGGGGATGATATTCCGGAGTGGTTTGCATTT
AAATCGGTCGTGAAGGTGTTGAGGGAGACGTAAGGGCGAGGGGCGTGAGA
GAGAGTGGGAAGGAGAGGGAAGGAGAGAAGGAGAGAAGGAGGGAGGGAGG
GAGGCGAGGGGATGGTGGGAAGTGAGTGGTGGCAGCGGCGCGCCATCAA
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Coding sequence (CDS) from alignment at scaffold_11:639900..641698-

>mRNA_5819 ID=mRNA_5819|Name=jgi.p|Nanoce1779_2|590408|organism=Nannochloropsis oceanica|type=CDS|length=1149bp|location=Sequence derived from alignment at scaffold_11:639900..641698- (Nannochloropsis oceanica)
ATGGCCGCCGATGTCAAGCAAAAGCCCCATGGCGGAAAACTTGTGGATTT
GATGGTGGAGGGTGCTGCTGCCGAAGCCGCAATTGCCCGCGCTACATCCG
AAGTTGAGCTCTCTGATCGCCAGCTGTGCGACGTGGAGCTGATCGTGAAC
GGGGGCTTCTCCCCCCTGACCGGCTTTATGAATGAGGAAGAGTACAAGAG
CGTGGTGGAGACACACCGCCTGCCCAATGGCCTCTTGTTTGGCCTGCCCG
TTGTGTTCGACACGGACAGCGAGACCATTCAACCCGGGGCTAGCATTCTC
CTTAAGCAGGGGGATCGCCCCATCGCAGTTTTTGATGTATCTGCCAAGTA
CACCCCCAACAAGCCTTTGGAAGCCCTGAAATGCTACGGAACCTCCTCAC
TGGAGCATCCTGGTGTCCAAATGATTGCGATGGAACGTGGCAAATACTAC
CTCGGAGGGCAGCTCACGGGTTTGAACCTCCCTGTCCGCGATTTCAACTG
CAAGACTCCCAAGGAAGTGCGTGCGGGCCTTCCCAAGGCTAAGGACGTGG
TGGCGTTTCAATGCCGCAACCCCGTCCACCGAGCACACTACGAGCTCTTC
ACTCGTGCACTGGACGCCCCTAACGTCGAGAAGGATGGGATCGTCCTCGT
CCACCCTACCTGTGGTCCAACCCAAGCCGATGATATTCCGGGTATCGTCC
GTTACCGCACGTACGAGGTGCTGAAGGAAGAGACTGCAAACCCCCGCATC
GAGTGGGCGTATCTCCCTTACTCCATGCACATGGCCGGTCCTCGTGAGGC
ACTGCAACACATGATGATTAGGAAGAACTATGGATGCACTCATTTCATCA
TCGGTCGGGACATGGCCGGCAGCAAGAGCTCGGTGTCTGGGGAGGATTTC
TATGGCGCGTATGACGCCCAAAACTTCGCCAAATCGATCAGCAAGGAGCT
GGGGGTTGATACCGTGCCCAGCCTGGACCTGGTGTTTACGGAGGAGGAGG
GGTACGTGACAGCGGAGAGGGCAAAGGAGGCGAATTTGAGTATTAAGAAG
TTGTCGGGCACCAAGTTTAGGCAAATGCTCCGTGCGGGGGATGATATTCC
GGAGTGGTTTGCATTTAAATCGGTCGTGAAGGTGTTGAGGGAGACGTAA
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Synonyms
Publications