jgi.p|Nanoce1779_2|590406, mRNA_5818 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590406
Unique NamemRNA_5818
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1088
Alignment locationscaffold_11:638536..639623 -

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Properties
Property NameValue
TranscriptId590492
TrackFilteredModels2
ProteinId590406
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:638536..639623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590406gene_5818Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590406mRNA_5818-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5818CDS_5818Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5818 ID=mRNA_5818|Name=jgi.p|Nanoce1779_2|590406|organism=Nannochloropsis oceanica|type=mRNA|length=1088bp
TTTGGCTGTCGGTAATTATTCATTTCTCGTACCTCAACCTTTCTCCTCTC
TCTCCTCTTTTTCTCTGTCGGAGACGGGTCCGCAGACATACACACATCCT
TCGTCTTTCTTTGCTCTTGTTTTCCCTCCCCCCTTTCTCCCTCTCCCTCC
TCATCTTCCTTCTCTCTATATGCTTCCATCTCCTTCCCGTCACTTGTCAC
ACGCTCCCCGCCTCAATCATGCATAATTGGTTGTGTTAAGTAGTTGTGAT
CATTTAAAATGTGTGTCGATATCTCGTACACACGCACACATGCAGAACGC
TCCTTCCCCCCCTCCCACTTTTCGTCCCCGTTTAATGAGTACAATACAGG
CCTCTTTCTCACGCATCTCACGCACCCACCACTCTCTCGAAACAGGATTA
TTTTTACTCTTCGTCCTCCCTTCCTCTTGTACACTTAATTTGTATCAACA
TATGTTTTTTTCTTCACCCTTACATACACTCATCCCTCATCCTCTTCCTC
TTCATCTTTTTCCTCCTCCTCTTCTTCTCCGCTCTCTGAATCTTGCGCTC
TCGGTGTTTCTTGCTCGCTATCTCCTCCCCCCTATACAACTCCCCCAAGA
TCCACTACTGGAAACAGGACGGGTCGGCCACTCCCCCCTCCCTCCATCCC
TCCCTCCTTCCCTCCCCCACTCCCACGACTACTACTACTATCACTGCTAC
TGTAACTCCCACTGCTGCTGGTCCGCGGAGAGGACGATAGCGGCGACGAC
GCCCCGCCTTTTCCCTTCCACAGCACCCCAACGGCCGAGGGAGATATGTA
CGAAGTAGCAGCAGTGACAGCGGAAACAGCAGCAGGAGCAGCACTAGGAA
AGATAATTAAGCGCATTCCCTCCTCTAGAAAGCTTTGTTCCCCTACAGGG
AAGTAATTGCGATTGGCCCTTCGGATATCGAGTTCGCTCACTCCGTAACG
GGCACACAACCCCTTCATCGTCTCTCCCCTCACCACCACATGCTGCCTCC
TCCTCTGCTGCTGCTCCTGCTGCTGCCTTTGCGGATGCTGCTCTTGCTGC
CGATGCTGATGCTTCCATCCCTCCCTCCAACAGTACCC
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protein sequence of jgi.p|Nanoce1779_2|590406

>mRNA_5818-protein ID=mRNA_5818-protein|Name=jgi.p|Nanoce1779_2|590406|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MQNAPSPPPTFRPRLMSTIQASFSRISRTHHSLETGLFLLFVLPSSCTLN
LYQHMFFSSPLHTLIPHPLPLHLFPPPLLLRSLNLALSVFLARYLLPPIQ
LPQDPLLETGRVGHSPLPPSLPPSLPHSHDYYYYHCYCNSHCCWSAERTI
AATTPRLFPSTAPQRPREICTK*
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mRNA from alignment at scaffold_11:638536..639623-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5818 ID=mRNA_5818|Name=jgi.p|Nanoce1779_2|590406|organism=Nannochloropsis oceanica|type=mRNA|length=1088bp|location=Sequence derived from alignment at scaffold_11:638536..639623- (Nannochloropsis oceanica)
TTTGGCTGTCGGTAATTATTCATTTCTCGTACCTCAACCTTTCTCCTCTC
TCTCCTCTTTTTCTCTGTCGGAGACGGGTCCGCAGACATACACACATCCT
TCGTCTTTCTTTGCTCTTGTTTTCCCTCCCCCCTTTCTCCCTCTCCCTCC
TCATCTTCCTTCTCTCTATATGCTTCCATCTCCTTCCCGTCACTTGTCAC
ACGCTCCCCGCCTCAATCATGCATAATTGGTTGTGTTAAGTAGTTGTGAT
CATTTAAAATGTGTGTCGATATCTCGTACACACGCACACATGCAGAACGC
TCCTTCCCCCCCTCCCACTTTTCGTCCCCGTTTAATGAGTACAATACAGG
CCTCTTTCTCACGCATCTCACGCACCCACCACTCTCTCGAAACAGGATTA
TTTTTACTCTTCGTCCTCCCTTCCTCTTGTACACTTAATTTGTATCAACA
TATGTTTTTTTCTTCACCCTTACATACACTCATCCCTCATCCTCTTCCTC
TTCATCTTTTTCCTCCTCCTCTTCTTCTCCGCTCTCTGAATCTTGCGCTC
TCGGTGTTTCTTGCTCGCTATCTCCTCCCCCCTATACAACTCCCCCAAGA
TCCACTACTGGAAACAGGACGGGTCGGCCACTCCCCCCTCCCTCCATCCC
TCCCTCCTTCCCTCCCCCACTCCCACGACTACTACTACTATCACTGCTAC
TGTAACTCCCACTGCTGCTGGTCCGCGGAGAGGACGATAGCGGCGACGAC
GCCCCGCCTTTTCCCTTCCACAGCACCCCAACGGCCGAGGGAGATATGTA
CGAAGTAGCAGCAGTGACAGCGGAAACAGCAGCAGGAGCAGCACTAGGAA
AGATAATTAAGCGCATTCCCTCCTCTAGAAAGCTTTGTTCCCCTACAGGG
AAGTAATTGCGATTGGCCCTTCGGATATCGAGTTCGCTCACTCCGTAACG
GGCACACAACCCCTTCATCGTCTCTCCCCTCACCACCACATGCTGCCTCC
TCCTCTGCTGCTGCTCCTGCTGCTGCCTTTGCGGATGCTGCTCTTGCTGC
CGATGCTGATGCTTCCATCCCTCCCTCCAACAGTACCC
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Coding sequence (CDS) from alignment at scaffold_11:638536..639623-

>mRNA_5818 ID=mRNA_5818|Name=jgi.p|Nanoce1779_2|590406|organism=Nannochloropsis oceanica|type=CDS|length=519bp|location=Sequence derived from alignment at scaffold_11:638536..639623- (Nannochloropsis oceanica)
ATGCAGAACGCTCCTTCCCCCCCTCCCACTTTTCGTCCCCGTTTAATGAG
TACAATACAGGCCTCTTTCTCACGCATCTCACGCACCCACCACTCTCTCG
AAACAGGATTATTTTTACTCTTCGTCCTCCCTTCCTCTTGTACACTTAAT
TTGTATCAACATATGTTTTTTTCTTCACCCTTACATACACTCATCCCTCA
TCCTCTTCCTCTTCATCTTTTTCCTCCTCCTCTTCTTCTCCGCTCTCTGA
ATCTTGCGCTCTCGGTGTTTCTTGCTCGCTATCTCCTCCCCCCTATACAA
CTCCCCCAAGATCCACTACTGGAAACAGGACGGGTCGGCCACTCCCCCCT
CCCTCCATCCCTCCCTCCTTCCCTCCCCCACTCCCACGACTACTACTACT
ATCACTGCTACTGTAACTCCCACTGCTGCTGGTCCGCGGAGAGGACGATA
GCGGCGACGACGCCCCGCCTTTTCCCTTCCACAGCACCCCAACGGCCGAG
GGAGATATGTACGAAGTAG
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Synonyms
Publications