jgi.p|Nanoce1779_2|590402, mRNA_5815 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590402
Unique NamemRNA_5815
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length638
Alignment locationscaffold_11:635532..636169 +

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Properties
Property NameValue
TranscriptId590488
TrackFilteredModels2
ProteinId590402
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:635532..636169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590402gene_5815Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590402mRNA_5815-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5815CDS_5815Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5815 ID=mRNA_5815|Name=jgi.p|Nanoce1779_2|590402|organism=Nannochloropsis oceanica|type=mRNA|length=638bp
GTTGTGGGTGGGGGAGGGGGTAATTTTGGTGGGGTTGTGCACGGCTTTAA
GTATCTGATCATCCCTCTCCCGTCGGTCTGGTGGAGGAAGACGCTGGACC
CTACCCTGGCCGCATTTCCGACAGCGCTATGGTTTTGGATTCGCGCATCG
AGAAGCGCTTGGCTGGCTTTTGTGGCCAGGAGGGGCGGGATTACAAATTA
TTTGTGGACCCAGCTTTCGGTGCTTTGCGTTTCATCTCGAAGCCATTCAG
GCACACTGTAGCGACGGAGGTTGAGTCCATCAGAAACACGCGCATTTCGC
GCGTGCGCGTGACTGTGGAGCAAACAATAGGGCACATTACGCAGCAGCTT
TCGGCCGTTGTTTTCGTACGAACAGAGCGTGTCGGCGACGGGGATGTGTG
CAAGAGAAACCTCGTCGGTTGCTTCTTGCGCAACGTTTGGACGTGCGTGC
GGGGAGGGAACCAAATCTTGGAGTTCTTTGGGTGGTGCCCGCCGACACTT
GAGTATTTTTTGGAAGAACGACAATTCCGCGATCCTCTCCCACCCCGCCT
GGAGCAAATGGGTGTCTTTCAACTACGGACATCAGAAGAACAAGAAGATG
AGTGAGACAAAAGAAATTATTCGTACTACGTATGCGAC
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protein sequence of jgi.p|Nanoce1779_2|590402

>mRNA_5815-protein ID=mRNA_5815-protein|Name=jgi.p|Nanoce1779_2|590402|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MVLDSRIEKRLAGFCGQEGRDYKLFVDPAFGALRFISKPFRHTVATEVES
IRNTRISRVRVTVEQTIGHITQQLSAVVFVRTERVGDGDVCKRNLVGCFL
RNVWTCVRGGNQILEFFGWCPPTLEYFLEERQFRDPLPPRLEQMGVFQLR
TSEEQEDE*
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mRNA from alignment at scaffold_11:635532..636169+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5815 ID=mRNA_5815|Name=jgi.p|Nanoce1779_2|590402|organism=Nannochloropsis oceanica|type=mRNA|length=638bp|location=Sequence derived from alignment at scaffold_11:635532..636169+ (Nannochloropsis oceanica)
GTTGTGGGTGGGGGAGGGGGTAATTTTGGTGGGGTTGTGCACGGCTTTAA
GTATCTGATCATCCCTCTCCCGTCGGTCTGGTGGAGGAAGACGCTGGACC
CTACCCTGGCCGCATTTCCGACAGCGCTATGGTTTTGGATTCGCGCATCG
AGAAGCGCTTGGCTGGCTTTTGTGGCCAGGAGGGGCGGGATTACAAATTA
TTTGTGGACCCAGCTTTCGGTGCTTTGCGTTTCATCTCGAAGCCATTCAG
GCACACTGTAGCGACGGAGGTTGAGTCCATCAGAAACACGCGCATTTCGC
GCGTGCGCGTGACTGTGGAGCAAACAATAGGGCACATTACGCAGCAGCTT
TCGGCCGTTGTTTTCGTACGAACAGAGCGTGTCGGCGACGGGGATGTGTG
CAAGAGAAACCTCGTCGGTTGCTTCTTGCGCAACGTTTGGACGTGCGTGC
GGGGAGGGAACCAAATCTTGGAGTTCTTTGGGTGGTGCCCGCCGACACTT
GAGTATTTTTTGGAAGAACGACAATTCCGCGATCCTCTCCCACCCCGCCT
GGAGCAAATGGGTGTCTTTCAACTACGGACATCAGAAGAACAAGAAGATG
AGTGAGACAAAAGAAATTATTCGTACTACGTATGCGAC
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Coding sequence (CDS) from alignment at scaffold_11:635532..636169+

>mRNA_5815 ID=mRNA_5815|Name=jgi.p|Nanoce1779_2|590402|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at scaffold_11:635532..636169+ (Nannochloropsis oceanica)
ATGGTTTTGGATTCGCGCATCGAGAAGCGCTTGGCTGGCTTTTGTGGCCA
GGAGGGGCGGGATTACAAATTATTTGTGGACCCAGCTTTCGGTGCTTTGC
GTTTCATCTCGAAGCCATTCAGGCACACTGTAGCGACGGAGGTTGAGTCC
ATCAGAAACACGCGCATTTCGCGCGTGCGCGTGACTGTGGAGCAAACAAT
AGGGCACATTACGCAGCAGCTTTCGGCCGTTGTTTTCGTACGAACAGAGC
GTGTCGGCGACGGGGATGTGTGCAAGAGAAACCTCGTCGGTTGCTTCTTG
CGCAACGTTTGGACGTGCGTGCGGGGAGGGAACCAAATCTTGGAGTTCTT
TGGGTGGTGCCCGCCGACACTTGAGTATTTTTTGGAAGAACGACAATTCC
GCGATCCTCTCCCACCCCGCCTGGAGCAAATGGGTGTCTTTCAACTACGG
ACATCAGAAGAACAAGAAGATGAGTGA
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Synonyms
Publications