jgi.p|Nanoce1779_2|590386, mRNA_5811 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590386
Unique NamemRNA_5811
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1409
Alignment locationscaffold_11:624584..626289 -

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Properties
Property NameValue
TranscriptId590472
TrackFilteredModels2
ProteinId590386
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:624584..626289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590386gene_5811Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590386mRNA_5811-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5811CDS_5811Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5811 ID=mRNA_5811|Name=jgi.p|Nanoce1779_2|590386|organism=Nannochloropsis oceanica|type=mRNA|length=1409bp
AAGGCCGGTGCTATGTTGCCATCAATACTCCCCTCAAATACTCCTCTTCG
CACGTCCACCGCTACCAGCACCAACCAAGGAGCGAAGAAAAGAAGAGCGA
CGAGGGAGGAAAGCAGGGGAGGGAAGCAGGGGCGGAGGGCTGGTCGTTAG
TCCCAAGGATTGCCAATGAGGGTTCCGCTCCGCCTTCGATGCGCAATATC
AGGAAGCACGAAGCGTTTTTGCTCGAGCTTTTCTCAAATTTACCGTCTTT
GGAACAAGAGGCTGAGGCATTCTTCTCGCGCGTGGCAGACACGAAGAAAC
GAGTTATGGTTATGGCGTTGAATGAAGGAGATATCGACCTGCTGGTCAAC
TTTGTCTGTTCTGCGAAACAGGCTGGGGTTTCATTGAGTAATTTGGTGGT
GATAGGCGCCGATCAGAGTGTGGTGGATGTTGCGACGAGCTTGAAGTTGC
ATTCTTTCTCGCATCCGGCCTTTGGGACCTTGCCGAGCGAGCACTCCGAG
TTCTACGGTGACGCCGGCTTTCAAGCGATCATGTGGTTGAAGGTCGTGTC
TGTCTGGATTGCGCTTCGCTTGGGCTATCACGTGCTGTTCCAAGACGCCG
ACTTGGTGTGGTTTAAGTCTCCCTGGTCTGCGTTTGACGATGAGAGCATC
GACGGATTTTTCATGGACGATGGGGCCAGATCTGAGAGATTTTCGCCATT
ATATGCGAACAGTGGTTTTTACTTTTTGAGGAGTAATCGAGTTGTATCTC
ACTTCATGCAGGGTTTGTTGTTTAGCTATGATTCCATTGTGCAGTACGCA
AGTCACCAGACTGTGTTTATTCAAGGCCTGACGGAGCATATTGCGAGAAA
TGGAATGCGGGTTAAGGTCCTGAGTAACGTGGAATTTCCGGGCGGGCAGA
TATACCATCATCGAAAGGAATTGATGAAGCAAATTTCGGCGCGGACCTAT
CTCCCCTACGTCTTTCACATGTGCTGGACACGAACCAAGGCCGACAAGCT
CTCTCAATTTATCGCCTCCGATTTATGGTATCTGACAACGGCCTGCAATG
GCACAGATGCCACGCTCAGGAGCCAACAAGAAGGCAAAATCAGCATCGAC
ACATGCTGCCTAGATCCTACCGCGGACTTTGGCGCTGTAACAAGGTGATG
AGAGTAATAGAGAATGGATGGAGAAATGAACCAAGAAAGAAAAAATGTCA
ATGGGTCGATACAGAGTTAAAATGATTAATTGAAGGCGATCTGAACTCAT
GATCGAGATGGAGAGTGCGTGTAGTGATCCCAAAGAAATGAGTTAATATA
TGGACAAAGTGGCAAAGAAAGCGTAAGTAAAGCGGGGCGAAGCTTTGGTT
TTGGTGTCACGATGAAATCTTCTTCCACGTAAAGAAACAAGATATAGACA
TAACCAGGC
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protein sequence of jgi.p|Nanoce1779_2|590386

>mRNA_5811-protein ID=mRNA_5811-protein|Name=jgi.p|Nanoce1779_2|590386|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MRNIRKHEAFLLELFSNLPSLEQEAEAFFSRVADTKKRVMVMALNEGDID
LLVNFVCSAKQAGVSLSNLVVIGADQSVVDVATSLKLHSFSHPAFGTLPS
EHSEFYGDAGFQAIMWLKVVSVWIALRLGYHVLFQDADLVWFKSPWSAFD
DESIDGFFMDDGARSERFSPLYANSGFYFLRSNRVVSHFMQGLLFSYDSI
VQYASHQTVFIQGLTEHIARNGMRVKVLSNVEFPGGQIYHHRKELMKQIS
ARTYLPYVFHMCWTRTKADKLSQFIASDLWYLTTACNGTDATLRSQQEGK
ISIDTCCLDPTADFGAVTR*
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mRNA from alignment at scaffold_11:624584..626289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5811 ID=mRNA_5811|Name=jgi.p|Nanoce1779_2|590386|organism=Nannochloropsis oceanica|type=mRNA|length=1706bp|location=Sequence derived from alignment at scaffold_11:624584..626289- (Nannochloropsis oceanica)
AAGGCCGGTGCTATGTTGCCATCAATACTCCCCTCAAATACTCCTCTTCG
CACGTCCACCGCTACCAGCACCAACCAAGGAGCGAAGAAAAGAAGAGCGA
CGAGGGAGGAAAGCAGGGGAGGGAAGCAGGGGCGGAGGGCTGGTCGTTAG
TCCCAAGGATTGCCAATGAGGGTTCCGCTCCGCCTTCGATGCGCAATATC
AGGAAGCACGAAGCGTTTTTGCTCGAGCTTTTCTCAAATTTACCGTCTTT
GGAACAAGAGGCTGAGGCATTCTTCTCGCGCGTGGCAGACACGAAGAAAC
GAGTTATGGTTATGGCGTTGAATGAAGGAGATATCGACCTGCTGGTCAAC
TTTGTCTGTTCTGCGAAACAGGCTGGGGTTTCATTGAGTAATTTGGTGGT
GATAGGCGCCGATCAGAGTGTGGTGGATGTTGCGACGAGCTTGAAGTTGC
ATTCTTTCTCGCATCCGGCCTTTGGGACCTTGCCGAGCGAGCACTCCGAG
TTGTAAGTCGGTGGGAAGGGAGAGGAGAAGGGGAGGAGGGGGAGGGGGAG
CTTGCACCTGTTACTTTGTCTTTGCCTTCCGCTCTCATTATCTCTATTTT
GACGGTACCCGCTTGCTCCCTCCCTCCTTCCCTCCCTCCCCTTCCTAACT
TTCTCAGCTACGGTGACGCCGGCTTTCAAGCGATCATGTGGTTGAAGGTC
GTGTCTGTCTGGATTGCGCTTCGCTTGGGCTATCACGTGCTGTTCCAAGA
CGCCGACTTGGTGTGGTTTAAGTCTCCCTGGTCTGCGTTTGACGATGAGA
GCATCGACGGATTTTTCATGGACGATGGGGCCAGATCTGAGAGATTTTCG
CCATTATATGCGAACAGTGGTTTTTACTTTTTGAGGAGTAATCGAGTTGT
ATCTCACTTCATGCAGGGTTTGTTGTTTAGCTATGATTCCATTGTGCAGT
ACGCAAGTCACCAGACTGTGTTTATTCAAGGCCTGACGGAGCATATTGCG
AGAAATGGAATGCGGGTTAAGGTCCTGAGTAACGTGGAATTTCCGGGCGG
GCAGATATACCATCATCGAAAGGAATTGATGAAGCAAATTTCGGGTAAGT
TGGAGGGCGGAGAGAGAGGAAGGAGGGGAGGGAGGGAAAGGTTCTATTGG
TTTTTGACTGTCTCTTTATCGCGCGTCGCACCTCCACTAACACACGCATA
TACTCTTTCAAACTGATATAACACGCACATTCAAAGCGCGGACCTATCTC
CCCTACGTCTTTCACATGTGCTGGACACGAACCAAGGCCGACAAGCTCTC
TCAATTTATCGCCTCCGATTTATGGTATCTGACAACGGCCTGCAATGGCA
CAGATGCCACGCTCAGGAGCCAACAAGAAGGCAAAATCAGCATCGACACA
TGCTGCCTAGATCCTACCGCGGACTTTGGCGCTGTAACAAGGTGATGAGA
GTAATAGAGAATGGATGGAGAAATGAACCAAGAAAGAAAAAATGTCAATG
GGTCGATACAGAGTTAAAATGATTAATTGAAGGCGATCTGAACTCATGAT
CGAGATGGAGAGTGCGTGTAGTGATCCCAAAGAAATGAGTTAATATATGG
ACAAAGTGGCAAAGAAAGCGTAAGTAAAGCGGGGCGAAGCTTTGGTTTTG
GTGTCACGATGAAATCTTCTTCCACGTAAAGAAACAAGATATAGACATAA
CCAGGC
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Coding sequence (CDS) from alignment at scaffold_11:624584..626289-

>mRNA_5811 ID=mRNA_5811|Name=jgi.p|Nanoce1779_2|590386|organism=Nannochloropsis oceanica|type=CDS|length=2880bp|location=Sequence derived from alignment at scaffold_11:624584..626289- (Nannochloropsis oceanica)
CGCGGACCTATCTCCCCTACGTCTTTCACATGTGCTGGACACGAACCAAG
GCCGACAAGCTCTCTCAATTTATCGCCTCCGATTTATGGTATCTGACAAC
GGCCTGCAATGGCACAGATGCCACGCTCAGGAGCCAACAAGAAGGCAAAA
TCAGCATCGACACATGCTGCCTAGATCCTACCGCGGACTTTGGCGCTGTA
ACAAGGTGACTACGGTGACGCCGGCTTTCAAGCGATCATGTGGTTGAAGG
TCGTGTCTGTCTGGATTGCGCTTCGCTTGGGCTATCACGTGCTGTTCCAA
GACGCCGACTTGGTGTGGTTTAAGTCTCCCTGGTCTGCGTTTGACGATGA
GAGCATCGACGGATTTTTCATGGACGATGGGGCCAGATCTGAGAGATTTT
CGCCATTATATGCGAACAGTGGTTTTTACTTTTTGAGGAGTAATCGAGTT
GTATCTCACTTCATGCAGGGTTTGTTGTTTAGCTATGATTCCATTGTGCA
GTACGCAAGTCACCAGACTGTGTTTATTCAAGGCCTGACGGAGCATATTG
CGAGAAATGGAATGCGGGTTAAGGTCCTGAGTAACGTGGAATTTCCGGGC
GGGCAGATATACCATCATCGAAAGGAATTGATGAAGCAAATTTCGGATGC
GCAATATCAGGAAGCACGAAGCGTTTTTGCTCGAGCTTTTCTCAAATTTA
CCGTCTTTGGAACAAGAGGCTGAGGCATTCTTCTCGCGCGTGGCAGACAC
GAAGAAACGAGTTATGGTTATGGCGTTGAATGAAGGAGATATCGACCTGC
TGGTCAACTTTGTCTGTTCTGCGAAACAGGCTGGGGTTTCATTGAGTAAT
TTGGTGGTGATAGGCGCCGATCAGAGTGTGGTGGATGTTGCGACGAGCTT
GAAGTTGCATTCTTTCTCGCATCCGGCCTTTGGGACCTTGCCGAGCGAGC
ACTCCGAGTTCGCGGACCTATCTCCCCTACGTCTTTCACATGTGCTGGAC
ACGAACCAAGGCCGACAAGCTCTCTCAATTTATCGCCTCCGATTTATGGT
ATCTGACAACGGCCTGCAATGGCACAGATGCCACGCTCAGGAGCCAACAA
GAAGGCAAAATCAGCATCGACACATGCTGCCTAGATCCTACCGCGGACTT
TGGCGCTGTAACAAGGTGACTACGGTGACGCCGGCTTTCAAGCGATCATG
TGGTTGAAGGTCGTGTCTGTCTGGATTGCGCTTCGCTTGGGCTATCACGT
GCTGTTCCAAGACGCCGACTTGGTGTGGTTTAAGTCTCCCTGGTCTGCGT
TTGACGATGAGAGCATCGACGGATTTTTCATGGACGATGGGGCCAGATCT
GAGAGATTTTCGCCATTATATGCGAACAGTGGTTTTTACTTTTTGAGGAG
TAATCGAGTTGTATCTCACTTCATGCAGGGTTTGTTGTTTAGCTATGATT
CCATTGTGCAGTACGCAAGTCACCAGACTGTGTTTATTCAAGGCCTGACG
GAGCATATTGCGAGAAATGGAATGCGGGTTAAGGTCCTGAGTAACGTGGA
ATTTCCGGGCGGGCAGATATACCATCATCGAAAGGAATTGATGAAGCAAA
TTTCGGATGCGCAATATCAGGAAGCACGAAGCGTTTTTGCTCGAGCTTTT
CTCAAATTTACCGTCTTTGGAACAAGAGGCTGAGGCATTCTTCTCGCGCG
TGGCAGACACGAAGAAACGAGTTATGGTTATGGCGTTGAATGAAGGAGAT
ATCGACCTGCTGGTCAACTTTGTCTGTTCTGCGAAACAGGCTGGGGTTTC
ATTGAGTAATTTGGTGGTGATAGGCGCCGATCAGAGTGTGGTGGATGTTG
CGACGAGCTTGAAGTTGCATTCTTTCTCGCATCCGGCCTTTGGGACCTTG
CCGAGCGAGCACTCCGAGTTCGCGGACCTATCTCCCCTACGTCTTTCACA
TGTGCTGGACACGAACCAAGGCCGACAAGCTCTCTCAATTTATCGCCTCC
GATTTATGGTATCTGACAACGGCCTGCAATGGCACAGATGCCACGCTCAG
GAGCCAACAAGAAGGCAAAATCAGCATCGACACATGCTGCCTAGATCCTA
CCGCGGACTTTGGCGCTGTAACAAGGTGACTACGGTGACGCCGGCTTTCA
AGCGATCATGTGGTTGAAGGTCGTGTCTGTCTGGATTGCGCTTCGCTTGG
GCTATCACGTGCTGTTCCAAGACGCCGACTTGGTGTGGTTTAAGTCTCCC
TGGTCTGCGTTTGACGATGAGAGCATCGACGGATTTTTCATGGACGATGG
GGCCAGATCTGAGAGATTTTCGCCATTATATGCGAACAGTGGTTTTTACT
TTTTGAGGAGTAATCGAGTTGTATCTCACTTCATGCAGGGTTTGTTGTTT
AGCTATGATTCCATTGTGCAGTACGCAAGTCACCAGACTGTGTTTATTCA
AGGCCTGACGGAGCATATTGCGAGAAATGGAATGCGGGTTAAGGTCCTGA
GTAACGTGGAATTTCCGGGCGGGCAGATATACCATCATCGAAAGGAATTG
ATGAAGCAAATTTCGGATGCGCAATATCAGGAAGCACGAAGCGTTTTTGC
TCGAGCTTTTCTCAAATTTACCGTCTTTGGAACAAGAGGCTGAGGCATTC
TTCTCGCGCGTGGCAGACACGAAGAAACGAGTTATGGTTATGGCGTTGAA
TGAAGGAGATATCGACCTGCTGGTCAACTTTGTCTGTTCTGCGAAACAGG
CTGGGGTTTCATTGAGTAATTTGGTGGTGATAGGCGCCGATCAGAGTGTG
GTGGATGTTGCGACGAGCTTGAAGTTGCATTCTTTCTCGCATCCGGCCTT
TGGGACCTTGCCGAGCGAGCACTCCGAGTT
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Synonyms
Publications