Properties
| Property Name | Value |
|---|
| TranscriptId | 590461 |
| Track | FilteredModels2 |
| ProteinId | 590375 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:620820..622334 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5809 ID=mRNA_5809|Name=jgi.p|Nanoce1779_2|590375|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp
ACAGCTAACCTATGCATGACAACAACACATGGGGAGCTGGTTTTTTCCCT
GATAAAGCGTAAGACGACGCCGCTTCGGATCTTGTCTAGCTACCCGCTTC
GATTCTTGGTGCCGTCAAAGCGTGACGGTGACAATTGCGTCGACTGCTGC
TGGGTGTACTCCTTGAACTACGGCGGCGGCCTCGTGGCAGGAGACCATGT
GCACATTACATGTGAGCTGGGCAAAGAATGCACTGTTCTTTTGACAACAC
AGGGTAGTACCAAAGTGTACAGGATGCTCCCCCTCCCCACCACAACAGTC
ACCACTCAGATAGTCAACACAATGGTGACGCGACAAACTTTTAGTGCTAC
CGTGGCGGCCTTGGCGACTCTTGCTTTGCTTCCTGAGTTCCTGACTTGCT
ACCGCGGGGCTAATTATCGGCAAAATCAAGAGATCCGCGTCGCGCGTGGG
GGAAACTTGGTTCTCGTCGACTGGTATACGAGTGGGCGAATGGGCCGGGG
AGAGTCTTGGGCATTTGAACGTCTTGTGTCGGAGACAAGGATTTATTTGG
AGGACGAGTTGTTACTGTGGGAGCCATTAGAACTGCAAGACAACGACGGT
GACGCGTCTGTATCTGCTGCTGCTGCTGCTTCGCCCTCCTTGTCGCTGGC
GGCACGGATGGGTCCATATGAGTGTTTTTGTCTGGTGGTCCTGGTCGGAC
CGAGACTCACAGACGTGGTAAAGCAAATCGCAGATACACAAGAACGACCT
TCATTTTTTAGTCTCAACAAAGGAAGGGGCCTGTCGGCTACACAACAGCA
ACAGCAGCGTCAGAGACAAGCAGTACCGGGACAACCCCCTGCTTGTGTTT
CTTCCTTGTGTCGTCTCTTGGAAGGGAGCCAGGGAGGGGTCGGCCCTGGA
CTGGTGCTTAAAATTGCTGGCAAAGCTACGGAGGAGGTCCGTGAGCTGTT
GCGGTCCTTGCTGGAGCCACTGGAAAGCGTGGTCGGGAGCAAACCGTACA
GTAGCATGTAAAGTGGGGATAGGGGTAGGGCTGGGAGAACGAGATGATAT
AAAGTAACATCGATTGCGTAAATGACCACGAAAACCCTCAAAGAATTCAA
AGAACAAAATGAAGTGAATCAACCCCGCACAACTGCACTCCGAAAGAGGA
TATGTCAAAGTAAACAACGAGAAAAAAAGGGAGCGGGA back to topprotein sequence of jgi.p|Nanoce1779_2|590375 >mRNA_5809-protein ID=mRNA_5809-protein|Name=jgi.p|Nanoce1779_2|590375|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MTTTHGELVFSLIKRKTTPLRILSSYPLRFLVPSKRDGDNCVDCCWVYSL
NYGGGLVAGDHVHITCELGKECTVLLTTQGSTKVYRMLPLPTTTVTTQIV
NTMVTRQTFSATVAALATLALLPEFLTCYRGANYRQNQEIRVARGGNLVL
VDWYTSGRMGRGESWAFERLVSETRIYLEDELLLWEPLELQDNDGDASVS
AAAAASPSLSLAARMGPYECFCLVVLVGPRLTDVVKQIADTQERPSFFSL
NKGRGLSATQQQQQRQRQAVPGQPPACVSSLCRLLEGSQGGVGPGLVLKI
AGKATEEVRELLRSLLEPLESVVGSKPYSSM* back to topmRNA from alignment at scaffold_11:620820..622334- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5809 ID=mRNA_5809|Name=jgi.p|Nanoce1779_2|590375|organism=Nannochloropsis oceanica|type=mRNA|length=1515bp|location=Sequence derived from alignment at scaffold_11:620820..622334- (Nannochloropsis oceanica)
ACAGCTAACCTATGCATGACAACAACACATGGGGAGCTGGTTTTTTCCCT
GATAAAGCGTAAGACGACGCCGCTTCGGATCTTGTCTAGGTACGTGTACG
TTTGTTTATAGACTGAGTCTCTCCCTCCTCTTGATCCTACTGATCCCTAC
CCTACCCCTACATGCCCTTCTCTTGCAAGCTACCCGCTTCGATTCTTGGT
GCCGTCAAAGCGTGACGGTGACAATTGCGTCGACTGCTGCTGGGTGGTAA
GTGCTGTCAGGATATAGAAAGGATGGCCACTGCTCACATAACCCTCCATT
AAATTTCCACCACAGTACTCCTTGAACTACGGCGGCGGCCTCGTGGCAGG
AGACCATGTGCACATTACATGTGAGCTGGGCAAAGAATGCACTGTTCTTT
TGACAACACAGGTAGGACCTAGGTTGATTCTCTCTTCTTCTTATGCCTTG
CCACGGCGCTTACAGTACGTGCTTTTGCTACGCCTGGCCCCCCTACAGGG
TAGTACCAAAGTGTACAGGATGCTCCCCCTCCCCACCACAACAGTCACCA
CTCAGATAGTCAACACAATGGTGACGCGACAAACTTTTAGTGCTACCGTG
GCGGCCTTGGCGACTCTTGCTTTGCTTCCTGAGTTCCTGACTTGCTACCG
GTAAGTCTATTTTAAGTTAAGAAGACATACACCCCACCCTTCAATCCCCC
ATTTCTCATGCTTCACTGCCACCTTACATAGCGGGGCTAATTATCGGCAA
AATCAAGAGATCCGCGTCGCGCGTGGGGGAAACTTGGTTCTCGTCGACTG
GTATACGAGTGGGCGAATGGGCCGGGGAGAGTCTTGGGCATTTGAACGTC
TTGTGTCGGAGACAAGGATTTATTTGGAGGACGAGTTGTTACTGTGGGAG
CCATTAGAACTGCAAGACAACGACGGTGACGCGTCTGTATCTGCTGCTGC
TGCTGCTTCGCCCTCCTTGTCGCTGGCGGCACGGATGGGTCCATATGAGT
GTTTTTGTCTGGTGGTCCTGGTCGGACCGAGACTCACAGACGTGGTAAAG
CAAATCGCAGATACACAAGAACGACCTTCATTTTTTAGTCTCAACAAAGG
AAGGGGCCTGTCGGCTACACAACAGCAACAGCAGCGTCAGAGACAAGCAG
TACCGGGACAACCCCCTGCTTGTGTTTCTTCCTTGTGTCGTCTCTTGGAA
GGGAGCCAGGGAGGGGTCGGCCCTGGACTGGTGCTTAAAATTGCTGGCAA
AGCTACGGAGGAGGTCCGTGAGCTGTTGCGGTCCTTGCTGGAGCCACTGG
AAAGCGTGGTCGGGAGCAAACCGTACAGTAGCATGTAAAGTGGGGATAGG
GGTAGGGCTGGGAGAACGAGATGATATAAAGTAACATCGATTGCGTAAAT
GACCACGAAAACCCTCAAAGAATTCAAAGAACAAAATGAAGTGAATCAAC
CCCGCACAACTGCACTCCGAAAGAGGATATGTCAAAGTAAACAACGAGAA
AAAAAGGGAGCGGGA back to topCoding sequence (CDS) from alignment at scaffold_11:620820..622334- >mRNA_5809 ID=mRNA_5809|Name=jgi.p|Nanoce1779_2|590375|organism=Nannochloropsis oceanica|type=CDS|length=4980bp|location=Sequence derived from alignment at scaffold_11:620820..622334- (Nannochloropsis oceanica)
CGGGGCTAATTATCGGCAAAATCAAGAGATCCGCGTCGCGCGTGGGGGAA
ACTTGGTTCTCGTCGACTGGTATACGAGTGGGCGAATGGGCCGGGGAGAG
TCTTGGGCATTTGAACGTCTTGTGTCGGAGACAAGGATTTATTTGGAGGA
CGAGTTGTTACTGTGGGAGCCATTAGAACTGCAAGACAACGACGGTGACG
CGTCTGTATCTGCTGCTGCTGCTGCTTCGCCCTCCTTGTCGCTGGCGGCA
CGGATGGGTCCATATGAGTGTTTTTGTCTGGTGGTCCTGGTCGGACCGAG
ACTCACAGACGTGGTAAAGCAAATCGCAGATACACAAGAACGACCTTCAT
TTTTTAGTCTCAACAAAGGAAGGGGCCTGTCGGCTACACAACAGCAACAG
CAGCGTCAGAGACAAGCAGTACCGGGACAACCCCCTGCTTGTGTTTCTTC
CTTGTGTCGTCTCTTGGAAGGGAGCCAGGGAGGGGTCGGCCCTGGACTGG
TGCTTAAAATTGCTGGCAAAGCTACGGAGGAGGTCCGTGAGCTGTTGCGG
TCCTTGCTGGAGCCACTGGAAAGCGTGGTCGGGAGCAAACCGTACAGTAG
CATGTAAGGTAGTACCAAAGTGTACAGGATGCTCCCCCTCCCCACCACAA
CAGTCACCACTCAGATAGTCAACACAATGGTGACGCGACAAACTTTTAGT
GCTACCGTGGCGGCCTTGGCGACTCTTGCTTTGCTTCCTGAGTTCCTGAC
TTGCTACCGTACTCCTTGAACTACGGCGGCGGCCTCGTGGCAGGAGACCA
TGTGCACATTACATGTGAGCTGGGCAAAGAATGCACTGTTCTTTTGACAA
CACAGCTACCCGCTTCGATTCTTGGTGCCGTCAAAGCGTGACGGTGACAA
TTGCGTCGACTGCTGCTGGGTGATGACAACAACACATGGGGAGCTGGTTT
TTTCCCTGATAAAGCGTAAGACGACGCCGCTTCGGATCTTGTCTAGCGGG
GCTAATTATCGGCAAAATCAAGAGATCCGCGTCGCGCGTGGGGGAAACTT
GGTTCTCGTCGACTGGTATACGAGTGGGCGAATGGGCCGGGGAGAGTCTT
GGGCATTTGAACGTCTTGTGTCGGAGACAAGGATTTATTTGGAGGACGAG
TTGTTACTGTGGGAGCCATTAGAACTGCAAGACAACGACGGTGACGCGTC
TGTATCTGCTGCTGCTGCTGCTTCGCCCTCCTTGTCGCTGGCGGCACGGA
TGGGTCCATATGAGTGTTTTTGTCTGGTGGTCCTGGTCGGACCGAGACTC
ACAGACGTGGTAAAGCAAATCGCAGATACACAAGAACGACCTTCATTTTT
TAGTCTCAACAAAGGAAGGGGCCTGTCGGCTACACAACAGCAACAGCAGC
GTCAGAGACAAGCAGTACCGGGACAACCCCCTGCTTGTGTTTCTTCCTTG
TGTCGTCTCTTGGAAGGGAGCCAGGGAGGGGTCGGCCCTGGACTGGTGCT
TAAAATTGCTGGCAAAGCTACGGAGGAGGTCCGTGAGCTGTTGCGGTCCT
TGCTGGAGCCACTGGAAAGCGTGGTCGGGAGCAAACCGTACAGTAGCATG
TAAGGTAGTACCAAAGTGTACAGGATGCTCCCCCTCCCCACCACAACAGT
CACCACTCAGATAGTCAACACAATGGTGACGCGACAAACTTTTAGTGCTA
CCGTGGCGGCCTTGGCGACTCTTGCTTTGCTTCCTGAGTTCCTGACTTGC
TACCGTACTCCTTGAACTACGGCGGCGGCCTCGTGGCAGGAGACCATGTG
CACATTACATGTGAGCTGGGCAAAGAATGCACTGTTCTTTTGACAACACA
GCTACCCGCTTCGATTCTTGGTGCCGTCAAAGCGTGACGGTGACAATTGC
GTCGACTGCTGCTGGGTGATGACAACAACACATGGGGAGCTGGTTTTTTC
CCTGATAAAGCGTAAGACGACGCCGCTTCGGATCTTGTCTAGCGGGGCTA
ATTATCGGCAAAATCAAGAGATCCGCGTCGCGCGTGGGGGAAACTTGGTT
CTCGTCGACTGGTATACGAGTGGGCGAATGGGCCGGGGAGAGTCTTGGGC
ATTTGAACGTCTTGTGTCGGAGACAAGGATTTATTTGGAGGACGAGTTGT
TACTGTGGGAGCCATTAGAACTGCAAGACAACGACGGTGACGCGTCTGTA
TCTGCTGCTGCTGCTGCTTCGCCCTCCTTGTCGCTGGCGGCACGGATGGG
TCCATATGAGTGTTTTTGTCTGGTGGTCCTGGTCGGACCGAGACTCACAG
ACGTGGTAAAGCAAATCGCAGATACACAAGAACGACCTTCATTTTTTAGT
CTCAACAAAGGAAGGGGCCTGTCGGCTACACAACAGCAACAGCAGCGTCA
GAGACAAGCAGTACCGGGACAACCCCCTGCTTGTGTTTCTTCCTTGTGTC
GTCTCTTGGAAGGGAGCCAGGGAGGGGTCGGCCCTGGACTGGTGCTTAAA
ATTGCTGGCAAAGCTACGGAGGAGGTCCGTGAGCTGTTGCGGTCCTTGCT
GGAGCCACTGGAAAGCGTGGTCGGGAGCAAACCGTACAGTAGCATGTAAG
GTAGTACCAAAGTGTACAGGATGCTCCCCCTCCCCACCACAACAGTCACC
ACTCAGATAGTCAACACAATGGTGACGCGACAAACTTTTAGTGCTACCGT
GGCGGCCTTGGCGACTCTTGCTTTGCTTCCTGAGTTCCTGACTTGCTACC
GTACTCCTTGAACTACGGCGGCGGCCTCGTGGCAGGAGACCATGTGCACA
TTACATGTGAGCTGGGCAAAGAATGCACTGTTCTTTTGACAACACAGCTA
CCCGCTTCGATTCTTGGTGCCGTCAAAGCGTGACGGTGACAATTGCGTCG
ACTGCTGCTGGGTGATGACAACAACACATGGGGAGCTGGTTTTTTCCCTG
ATAAAGCGTAAGACGACGCCGCTTCGGATCTTGTCTAGCGGGGCTAATTA
TCGGCAAAATCAAGAGATCCGCGTCGCGCGTGGGGGAAACTTGGTTCTCG
TCGACTGGTATACGAGTGGGCGAATGGGCCGGGGAGAGTCTTGGGCATTT
GAACGTCTTGTGTCGGAGACAAGGATTTATTTGGAGGACGAGTTGTTACT
GTGGGAGCCATTAGAACTGCAAGACAACGACGGTGACGCGTCTGTATCTG
CTGCTGCTGCTGCTTCGCCCTCCTTGTCGCTGGCGGCACGGATGGGTCCA
TATGAGTGTTTTTGTCTGGTGGTCCTGGTCGGACCGAGACTCACAGACGT
GGTAAAGCAAATCGCAGATACACAAGAACGACCTTCATTTTTTAGTCTCA
ACAAAGGAAGGGGCCTGTCGGCTACACAACAGCAACAGCAGCGTCAGAGA
CAAGCAGTACCGGGACAACCCCCTGCTTGTGTTTCTTCCTTGTGTCGTCT
CTTGGAAGGGAGCCAGGGAGGGGTCGGCCCTGGACTGGTGCTTAAAATTG
CTGGCAAAGCTACGGAGGAGGTCCGTGAGCTGTTGCGGTCCTTGCTGGAG
CCACTGGAAAGCGTGGTCGGGAGCAAACCGTACAGTAGCATGTAAGGTAG
TACCAAAGTGTACAGGATGCTCCCCCTCCCCACCACAACAGTCACCACTC
AGATAGTCAACACAATGGTGACGCGACAAACTTTTAGTGCTACCGTGGCG
GCCTTGGCGACTCTTGCTTTGCTTCCTGAGTTCCTGACTTGCTACCGTAC
TCCTTGAACTACGGCGGCGGCCTCGTGGCAGGAGACCATGTGCACATTAC
ATGTGAGCTGGGCAAAGAATGCACTGTTCTTTTGACAACACAGCTACCCG
CTTCGATTCTTGGTGCCGTCAAAGCGTGACGGTGACAATTGCGTCGACTG
CTGCTGGGTGATGACAACAACACATGGGGAGCTGGTTTTTTCCCTGATAA
AGCGTAAGACGACGCCGCTTCGGATCTTGTCTAGCGGGGCTAATTATCGG
CAAAATCAAGAGATCCGCGTCGCGCGTGGGGGAAACTTGGTTCTCGTCGA
CTGGTATACGAGTGGGCGAATGGGCCGGGGAGAGTCTTGGGCATTTGAAC
GTCTTGTGTCGGAGACAAGGATTTATTTGGAGGACGAGTTGTTACTGTGG
GAGCCATTAGAACTGCAAGACAACGACGGTGACGCGTCTGTATCTGCTGC
TGCTGCTGCTTCGCCCTCCTTGTCGCTGGCGGCACGGATGGGTCCATATG
AGTGTTTTTGTCTGGTGGTCCTGGTCGGACCGAGACTCACAGACGTGGTA
AAGCAAATCGCAGATACACAAGAACGACCTTCATTTTTTAGTCTCAACAA
AGGAAGGGGCCTGTCGGCTACACAACAGCAACAGCAGCGTCAGAGACAAG
CAGTACCGGGACAACCCCCTGCTTGTGTTTCTTCCTTGTGTCGTCTCTTG
GAAGGGAGCCAGGGAGGGGTCGGCCCTGGACTGGTGCTTAAAATTGCTGG
CAAAGCTACGGAGGAGGTCCGTGAGCTGTTGCGGTCCTTGCTGGAGCCAC
TGGAAAGCGTGGTCGGGAGCAAACCGTACAGTAGCATGTAAGGTAGTACC
AAAGTGTACAGGATGCTCCCCCTCCCCACCACAACAGTCACCACTCAGAT
AGTCAACACAATGGTGACGCGACAAACTTTTAGTGCTACCGTGGCGGCCT
TGGCGACTCTTGCTTTGCTTCCTGAGTTCCTGACTTGCTACCGTACTCCT
TGAACTACGGCGGCGGCCTCGTGGCAGGAGACCATGTGCACATTACATGT
GAGCTGGGCAAAGAATGCACTGTTCTTTTGACAACACAGCTACCCGCTTC
GATTCTTGGTGCCGTCAAAGCGTGACGGTGACAATTGCGTCGACTGCTGC
TGGGTGATGACAACAACACATGGGGAGCTGGTTTTTTCCCTGATAAAGCG
TAAGACGACGCCGCTTCGGATCTTGTCTAG back to top
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