jgi.p|Nanoce1779_2|590371, mRNA_5808 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590371
Unique NamemRNA_5808
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1177
Alignment locationscaffold_11:619146..620322 -

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Properties
Property NameValue
TranscriptId590457
TrackFilteredModels2
ProteinId590371
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:619146..620322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590371gene_5808Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590371mRNA_5808-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5808CDS_5808Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5808 ID=mRNA_5808|Name=jgi.p|Nanoce1779_2|590371|organism=Nannochloropsis oceanica|type=mRNA|length=1177bp
ACAGTTGTTTCTTCCCCTACCCCAACATCATCCAAGCATGGAGGGCGGCG
GCGACGTTGGACGCGGACGCGGCGGCTTCGGCCGAGGACGTGGAGACAGA
GGAGGCGACCGTGGTCGTGGCCGTGGCCGCGGACGCGGGCGTGGTGGGGA
CAAAGACGAGAAGGAGGGCTGGACCCCCGTGACCAAACTCGGTCGCCTGG
TGAAGGAGGGCAAGATCAAGAGCTTGGAGGAGATCTTCCTTTACTCTCTG
CCTGTCAAGGAGTTTCAGATCATCGACAAGTTCCTCGCTGCCCCTCCCCC
CGGGGTCCTCGCCCCTACCTCGGGCCTTCGCGACGAGGTCATGAAGATCA
TGCCCGTGCAAAAGCAGACGTCCGCCGGGCAGCGCACGCGTTTTAAGGCC
TTCGTGGCCATTGGTGACTACGACGGACACGTCGGCCTCGGTGTGAAGTG
CGCCAAGGAAGTGGCCACAGCTATCCGAGGGGCGATCATCATGGCTAAGC
TCTCCATCGTCCCTGTGCGCCGTGGGTACTGGGGTCGAAAGATCGGGAAG
CCCCATACCATCCCGGTGAAGGTTACGGGCAAATGCGGCTCCGTCTCCGT
GCGCCTCGTCCCGGCGCCCCGTGGTTGCGGCCTGGTCGCTGCCCCCGTCC
CGAAGAAGTTGTTGAACATGGCGGGGATCAAGGACGTGTATACGGCCACG
ACCGGTAACTCTCGCACGCTTGGAAATTTCGTCAAGGCCGTCTTCTCAGC
TCTTTCGAAGACCTACGGCTATTTGACCCCCGACCTGTGGCAGCCGACGG
CACTGGGGCAGGCCCCTTATCAAGAGCACACGGACTTTTTGGCGAGCGGT
AAAGTAGAGTATGCGCGACGCAAGGAAGTCGAATATTAAGTAGGATCTTG
CAGGGGCGCGGGATGGAGGGAAGAAGGGAGTGTGGGACGGATAGGGCTTG
ACGGCATGCATTGCGTGACGTGGTGGCGGGTCTTCTGGAGGATGGTATAT
GGTATGAGTCATGGAAAGGAAGGGAGGGGACGAGAGGCTTTCGTGCGAGA
GCCTTTTGTCTAGAATCAAAGGTATGGACATTCTTGTCGTCCTTTTCTGG
AGGTACCGACAGATGAAAGAAGAAGGAAAAAGCGTCATTCAGTACAAGCA
GACATAGTATACAACAACAATGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|590371

>mRNA_5808-protein ID=mRNA_5808-protein|Name=jgi.p|Nanoce1779_2|590371|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MEGGGDVGRGRGGFGRGRGDRGGDRGRGRGRGRGRGGDKDEKEGWTPVTK
LGRLVKEGKIKSLEEIFLYSLPVKEFQIIDKFLAAPPPGVLAPTSGLRDE
VMKIMPVQKQTSAGQRTRFKAFVAIGDYDGHVGLGVKCAKEVATAIRGAI
IMAKLSIVPVRRGYWGRKIGKPHTIPVKVTGKCGSVSVRLVPAPRGCGLV
AAPVPKKLLNMAGIKDVYTATTGNSRTLGNFVKAVFSALSKTYGYLTPDL
WQPTALGQAPYQEHTDFLASGKVEYARRKEVEY*
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mRNA from alignment at scaffold_11:619146..620322-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5808 ID=mRNA_5808|Name=jgi.p|Nanoce1779_2|590371|organism=Nannochloropsis oceanica|type=mRNA|length=1177bp|location=Sequence derived from alignment at scaffold_11:619146..620322- (Nannochloropsis oceanica)
ACAGTTGTTTCTTCCCCTACCCCAACATCATCCAAGCATGGAGGGCGGCG
GCGACGTTGGACGCGGACGCGGCGGCTTCGGCCGAGGACGTGGAGACAGA
GGAGGCGACCGTGGTCGTGGCCGTGGCCGCGGACGCGGGCGTGGTGGGGA
CAAAGACGAGAAGGAGGGCTGGACCCCCGTGACCAAACTCGGTCGCCTGG
TGAAGGAGGGCAAGATCAAGAGCTTGGAGGAGATCTTCCTTTACTCTCTG
CCTGTCAAGGAGTTTCAGATCATCGACAAGTTCCTCGCTGCCCCTCCCCC
CGGGGTCCTCGCCCCTACCTCGGGCCTTCGCGACGAGGTCATGAAGATCA
TGCCCGTGCAAAAGCAGACGTCCGCCGGGCAGCGCACGCGTTTTAAGGCC
TTCGTGGCCATTGGTGACTACGACGGACACGTCGGCCTCGGTGTGAAGTG
CGCCAAGGAAGTGGCCACAGCTATCCGAGGGGCGATCATCATGGCTAAGC
TCTCCATCGTCCCTGTGCGCCGTGGGTACTGGGGTCGAAAGATCGGGAAG
CCCCATACCATCCCGGTGAAGGTTACGGGCAAATGCGGCTCCGTCTCCGT
GCGCCTCGTCCCGGCGCCCCGTGGTTGCGGCCTGGTCGCTGCCCCCGTCC
CGAAGAAGTTGTTGAACATGGCGGGGATCAAGGACGTGTATACGGCCACG
ACCGGTAACTCTCGCACGCTTGGAAATTTCGTCAAGGCCGTCTTCTCAGC
TCTTTCGAAGACCTACGGCTATTTGACCCCCGACCTGTGGCAGCCGACGG
CACTGGGGCAGGCCCCTTATCAAGAGCACACGGACTTTTTGGCGAGCGGT
AAAGTAGAGTATGCGCGACGCAAGGAAGTCGAATATTAAGTAGGATCTTG
CAGGGGCGCGGGATGGAGGGAAGAAGGGAGTGTGGGACGGATAGGGCTTG
ACGGCATGCATTGCGTGACGTGGTGGCGGGTCTTCTGGAGGATGGTATAT
GGTATGAGTCATGGAAAGGAAGGGAGGGGACGAGAGGCTTTCGTGCGAGA
GCCTTTTGTCTAGAATCAAAGGTATGGACATTCTTGTCGTCCTTTTCTGG
AGGTACCGACAGATGAAAGAAGAAGGAAAAAGCGTCATTCAGTACAAGCA
GACATAGTATACAACAACAATGGAGGG
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Coding sequence (CDS) from alignment at scaffold_11:619146..620322-

>mRNA_5808 ID=mRNA_5808|Name=jgi.p|Nanoce1779_2|590371|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at scaffold_11:619146..620322- (Nannochloropsis oceanica)
ATGGAGGGCGGCGGCGACGTTGGACGCGGACGCGGCGGCTTCGGCCGAGG
ACGTGGAGACAGAGGAGGCGACCGTGGTCGTGGCCGTGGCCGCGGACGCG
GGCGTGGTGGGGACAAAGACGAGAAGGAGGGCTGGACCCCCGTGACCAAA
CTCGGTCGCCTGGTGAAGGAGGGCAAGATCAAGAGCTTGGAGGAGATCTT
CCTTTACTCTCTGCCTGTCAAGGAGTTTCAGATCATCGACAAGTTCCTCG
CTGCCCCTCCCCCCGGGGTCCTCGCCCCTACCTCGGGCCTTCGCGACGAG
GTCATGAAGATCATGCCCGTGCAAAAGCAGACGTCCGCCGGGCAGCGCAC
GCGTTTTAAGGCCTTCGTGGCCATTGGTGACTACGACGGACACGTCGGCC
TCGGTGTGAAGTGCGCCAAGGAAGTGGCCACAGCTATCCGAGGGGCGATC
ATCATGGCTAAGCTCTCCATCGTCCCTGTGCGCCGTGGGTACTGGGGTCG
AAAGATCGGGAAGCCCCATACCATCCCGGTGAAGGTTACGGGCAAATGCG
GCTCCGTCTCCGTGCGCCTCGTCCCGGCGCCCCGTGGTTGCGGCCTGGTC
GCTGCCCCCGTCCCGAAGAAGTTGTTGAACATGGCGGGGATCAAGGACGT
GTATACGGCCACGACCGGTAACTCTCGCACGCTTGGAAATTTCGTCAAGG
CCGTCTTCTCAGCTCTTTCGAAGACCTACGGCTATTTGACCCCCGACCTG
TGGCAGCCGACGGCACTGGGGCAGGCCCCTTATCAAGAGCACACGGACTT
TTTGGCGAGCGGTAAAGTAGAGTATGCGCGACGCAAGGAAGTCGAATATT
AA
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Synonyms
Publications