jgi.p|Nanoce1779_2|590369, mRNA_5807 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590369
Unique NamemRNA_5807
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length807
Alignment locationscaffold_11:618325..619131 -

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Properties
Property NameValue
TranscriptId590455
TrackFilteredModels2
ProteinId590369
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:618325..619131 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590369gene_5807Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590369mRNA_5807-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5807CDS_5807Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5807 ID=mRNA_5807|Name=jgi.p|Nanoce1779_2|590369|organism=Nannochloropsis oceanica|type=mRNA|length=807bp
TTACCTTTGGTTAGCTTCGTTCTTCCCTTCATTTCTCTCCTGCCTTTCGT
CTCTCTCCTATGATGGGCGTGCGTGGCGCTTTATCTCTTGCCCTCCTTAT
CTTGTACACAGCGTCCACACTTTTTCCAAGATTTAATCGGCTGGTACTAC
TCATTTCTTTTCTGTACTCTTCCTCCGCAGCATCCACAACGATCTTTCCT
TCTCATCTACCGTTTTCCCACGCCACACATTTTTCGTTGTTCGTTCTTCT
CTTCTCCAGAAAGCACAGAGACAGAGACAGAGACAAAGCAAGCTAGATAA
ACGCACGGGCCACGACACATCCACTATCACGATCATCGTCACCCTGGTCG
TCATCAGACCTCCCCTCCTCTCACTCTCTCTCACTCTCTCTCTCTCTCAC
ACACACACACACACACACATCGCATTCTAATTTTTTGGTTGTTATCATAT
TAATGTACACACATCTCTCTCTCTCTCTCTTTTTTATTTTTTTATTTTGT
TACCTTTTTTTTTCTTCCTTTTTTTATTATTATTATTTTTTATTCTTCCC
CCCCCCCTCTTATCTCTTCTCGTTCTCTTTTCGTTGATTCTCGTTCCTGA
AGTTTTTTACATATCTTAAAAGCAGTGAGCAAGTCCGCATCCCACGCTCT
ATTTACCCTTCGAACTCCGAATCATCATCCTCCTCCTCAAACTCACTATC
AGGCTCCTCCTCGTCCTCCTCGTCCTCCTCGTCCTCGTCTTCGTCCTCAT
CATACACCACCTTCTTAGCAGCAGCCGCGCGACGGGGGGCCACATTCCGA
GGCACCA
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protein sequence of jgi.p|Nanoce1779_2|590369

>mRNA_5807-protein ID=mRNA_5807-protein|Name=jgi.p|Nanoce1779_2|590369|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MMGVRGALSLALLILYTASTLFPRFNRLVLLISFLYSSSAASTTIFPSHL
PFSHATHFSLFVLLFSRKHRDRDRDKAS*
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mRNA from alignment at scaffold_11:618325..619131-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5807 ID=mRNA_5807|Name=jgi.p|Nanoce1779_2|590369|organism=Nannochloropsis oceanica|type=mRNA|length=807bp|location=Sequence derived from alignment at scaffold_11:618325..619131- (Nannochloropsis oceanica)
TTACCTTTGGTTAGCTTCGTTCTTCCCTTCATTTCTCTCCTGCCTTTCGT
CTCTCTCCTATGATGGGCGTGCGTGGCGCTTTATCTCTTGCCCTCCTTAT
CTTGTACACAGCGTCCACACTTTTTCCAAGATTTAATCGGCTGGTACTAC
TCATTTCTTTTCTGTACTCTTCCTCCGCAGCATCCACAACGATCTTTCCT
TCTCATCTACCGTTTTCCCACGCCACACATTTTTCGTTGTTCGTTCTTCT
CTTCTCCAGAAAGCACAGAGACAGAGACAGAGACAAAGCAAGCTAGATAA
ACGCACGGGCCACGACACATCCACTATCACGATCATCGTCACCCTGGTCG
TCATCAGACCTCCCCTCCTCTCACTCTCTCTCACTCTCTCTCTCTCTCAC
ACACACACACACACACACATCGCATTCTAATTTTTTGGTTGTTATCATAT
TAATGTACACACATCTCTCTCTCTCTCTCTTTTTTATTTTTTTATTTTGT
TACCTTTTTTTTTCTTCCTTTTTTTATTATTATTATTTTTTATTCTTCCC
CCCCCCCTCTTATCTCTTCTCGTTCTCTTTTCGTTGATTCTCGTTCCTGA
AGTTTTTTACATATCTTAAAAGCAGTGAGCAAGTCCGCATCCCACGCTCT
ATTTACCCTTCGAACTCCGAATCATCATCCTCCTCCTCAAACTCACTATC
AGGCTCCTCCTCGTCCTCCTCGTCCTCCTCGTCCTCGTCTTCGTCCTCAT
CATACACCACCTTCTTAGCAGCAGCCGCGCGACGGGGGGCCACATTCCGA
GGCACCA
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Coding sequence (CDS) from alignment at scaffold_11:618325..619131-

>mRNA_5807 ID=mRNA_5807|Name=jgi.p|Nanoce1779_2|590369|organism=Nannochloropsis oceanica|type=CDS|length=237bp|location=Sequence derived from alignment at scaffold_11:618325..619131- (Nannochloropsis oceanica)
ATGATGGGCGTGCGTGGCGCTTTATCTCTTGCCCTCCTTATCTTGTACAC
AGCGTCCACACTTTTTCCAAGATTTAATCGGCTGGTACTACTCATTTCTT
TTCTGTACTCTTCCTCCGCAGCATCCACAACGATCTTTCCTTCTCATCTA
CCGTTTTCCCACGCCACACATTTTTCGTTGTTCGTTCTTCTCTTCTCCAG
AAAGCACAGAGACAGAGACAGAGACAAAGCAAGCTAG
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Synonyms
Publications