jgi.p|Nanoce1779_2|37859, mRNA_5805 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|37859
Unique NamemRNA_5805
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length443
Alignment locationscaffold_11:612687..613129 +

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Properties
Property NameValue
TranscriptId37945
TrackFilteredModels2
ProteinId37859
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:612687..613129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|37859gene_5805Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|37859mRNA_5805-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5805CDS_5805Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5805 ID=mRNA_5805|Name=jgi.p|Nanoce1779_2|37859|organism=Nannochloropsis oceanica|type=mRNA|length=443bp
CGACAGGGAAACGACGCGACGTGCCTCGCCCGACTATGTCCATACCATCG
TTAATTACGATGATTTTGACGACATGCCCGGCGGATTCACTCAGTAAAAA
TCAAACAGAGCAGTTTGAGGGCTTTTGGGCAGCTTTTTCCGTTCTCATCC
GTACTTTGCGGGGCAAATACTTCTCACCTTGCTTTCCTACCCTAGCAGTC
TGCAATGTACGCAATAATGCTGCTTGGTCCTCGTCTCTGAGCAACACACC
GCACCATCATTGTGTATCAGCATTCCTGATACCTGTTTATGGGGGCGCTG
GGCCCGACATTTGGGGCCCTGGGGTCGCGCATAGCTGCTGTCTAATCATG
TCCTGTTCAGCTGGTCGTTAGTGGTCTCACACCCATGCAACCCCACCCTC
ACCGCAGCACAAACTGGACTCAAGTATACACGCACATTATCGC
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protein sequence of jgi.p|Nanoce1779_2|37859

>mRNA_5805-protein ID=mRNA_5805-protein|Name=jgi.p|Nanoce1779_2|37859|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MSIPSLITMILTTCPADSLSKNQTEQFEGFWAAFSVLIRTLRGKYFSPCF
PTLAVCNVRNNAAWSSSLSNTPHHHCVSAFLIPVYGGAGPDIWGPGVAHS
CCLIMSCSAGR*
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mRNA from alignment at scaffold_11:612687..613129+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5805 ID=mRNA_5805|Name=jgi.p|Nanoce1779_2|37859|organism=Nannochloropsis oceanica|type=mRNA|length=443bp|location=Sequence derived from alignment at scaffold_11:612687..613129+ (Nannochloropsis oceanica)
CGACAGGGAAACGACGCGACGTGCCTCGCCCGACTATGTCCATACCATCG
TTAATTACGATGATTTTGACGACATGCCCGGCGGATTCACTCAGTAAAAA
TCAAACAGAGCAGTTTGAGGGCTTTTGGGCAGCTTTTTCCGTTCTCATCC
GTACTTTGCGGGGCAAATACTTCTCACCTTGCTTTCCTACCCTAGCAGTC
TGCAATGTACGCAATAATGCTGCTTGGTCCTCGTCTCTGAGCAACACACC
GCACCATCATTGTGTATCAGCATTCCTGATACCTGTTTATGGGGGCGCTG
GGCCCGACATTTGGGGCCCTGGGGTCGCGCATAGCTGCTGTCTAATCATG
TCCTGTTCAGCTGGTCGTTAGTGGTCTCACACCCATGCAACCCCACCCTC
ACCGCAGCACAAACTGGACTCAAGTATACACGCACATTATCGC
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Coding sequence (CDS) from alignment at scaffold_11:612687..613129+

>mRNA_5805 ID=mRNA_5805|Name=jgi.p|Nanoce1779_2|37859|organism=Nannochloropsis oceanica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_11:612687..613129+ (Nannochloropsis oceanica)
ATGTCCATACCATCGTTAATTACGATGATTTTGACGACATGCCCGGCGGA
TTCACTCAGTAAAAATCAAACAGAGCAGTTTGAGGGCTTTTGGGCAGCTT
TTTCCGTTCTCATCCGTACTTTGCGGGGCAAATACTTCTCACCTTGCTTT
CCTACCCTAGCAGTCTGCAATGTACGCAATAATGCTGCTTGGTCCTCGTC
TCTGAGCAACACACCGCACCATCATTGTGTATCAGCATTCCTGATACCTG
TTTATGGGGGCGCTGGGCCCGACATTTGGGGCCCTGGGGTCGCGCATAGC
TGCTGTCTAATCATGTCCTGTTCAGCTGGTCGTTAG
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Synonyms
Publications