jgi.p|Nanoce1779_2|590364, mRNA_5804 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590364
Unique NamemRNA_5804
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length952
Alignment locationscaffold_11:611218..612546 +

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Properties
Property NameValue
TranscriptId590450
TrackFilteredModels2
ProteinId590364
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:611218..612546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590364gene_5804Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590364mRNA_5804-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5804CDS_5804Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5804 ID=mRNA_5804|Name=jgi.p|Nanoce1779_2|590364|organism=Nannochloropsis oceanica|type=mRNA|length=952bp
ACAGGCTGTATAGCTCTTCACAGACGCCATCTGCCTGGCCGATTCGACGA
CAGGAAGCGCAAGCCATGGCAGCTGCAGCGCCGGAGCCTAAGAAGGAAGG
GCTGGTGGCCTTTGACAAAGATCACTATCCCGACGGTCTTAACGCCAATT
TTTTAGAACCAGACGCGGAGGGATTGGAAGCCAAGTATGCCGGGGCGAAG
GGATTGTTCACAGACCCAGAGACACGGGACATAGCACGCAATGTGGCTGA
CATTATAAAAGCTCTAGGTGACCTGACCGGCAAGAAAATTGTGGACCTGG
GAGCCGGGACGGGCTTATTTCTTGTCCCCTTGGACGCGGCCGTGGGAAAG
GAAGGTCACGTCTACGCTGTAGAGATCTCTCCAGGATTCATAGAGTTACT
ACAGAAGAAGAAGGAGACGGAAGGGCTAAGAAACACCACGGTAGCTCGAG
GGTCTGTCACAGACATGGGACTGCCAGCTGACCTTCAGGCAGATATCGTT
TTGCTGGTTGACGTCTACCATCATATTGAGTATGTACAGACGTATATGAA
GAATGTGCGGAAGGGCATGCGGAAAGGGGGCAAGCTTGTGCTGATTGACT
TTCACCGGATTCCGGAGAAAATCTGGAGCCATCCTCCCGACTGGGTCTTG
TCGCACGTCCGGGCAGGCCAAGAGGTGTTCAAGGCCGAGATCGAGGAGGC
TGGGTTCGAGCTCGAGAGAGAGATTACTTTGTCCAACCTGCAAGAAAATT
ATTTTCTCATTTTTGTGAATCCATGATCCTTAGCGCCAGGTTTTAAAAGA
AAATAGAAATGCTTGATCTGATTGAACAGGTTGAAATGCTGTGGTGACTG
AGACGTCTTATTGCAGGAGGGAGGTTGGAAGGATGGGTCAAATTGTAGGA
AATGAACCAGTGAGAAAAATGAACAGTAACGAATTAAATGTCTTCGATAG
AG
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protein sequence of jgi.p|Nanoce1779_2|590364

>mRNA_5804-protein ID=mRNA_5804-protein|Name=jgi.p|Nanoce1779_2|590364|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MAAAAPEPKKEGLVAFDKDHYPDGLNANFLEPDAEGLEAKYAGAKGLFTD
PETRDIARNVADIIKALGDLTGKKIVDLGAGTGLFLVPLDAAVGKEGHVY
AVEISPGFIELLQKKKETEGLRNTTVARGSVTDMGLPADLQADIVLLVDV
YHHIEYVQTYMKNVRKGMRKGGKLVLIDFHRIPEKIWSHPPDWVLSHVRA
GQEVFKAEIEEAGFELEREITLSNLQENYFLIFVNP*
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mRNA from alignment at scaffold_11:611218..612546+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5804 ID=mRNA_5804|Name=jgi.p|Nanoce1779_2|590364|organism=Nannochloropsis oceanica|type=mRNA|length=1329bp|location=Sequence derived from alignment at scaffold_11:611218..612546+ (Nannochloropsis oceanica)
ACAGGCTGTATAGCTCTTCACAGACGCCATCTGCCTGGCCGATTCGACGA
CAGGAAGCGCAAGCCATGGCAGCTGCAGCGCCGGAGCCTAAGAAGGAAGG
GCTGGTGGCCTTTGACAAAGGTCCGTGTTGATAGTCAAAAACGTCATCTC
TCCTCCCCTCCCTTTTGACTCCCCCCCTCCTCCACCTCCCACCTCCCACT
CTCACTTTCTAGATCACTATCCCGACGGTCTTAACGCCAATTTTTTAGAA
CCAGACGCGGAGGGATTGGAAGCCAAGTATGCCGGGGCGAAGGGATTGTT
CACAGACCCAGAGACACGGGACATAGCACGCAATGTGGCTGACATTATAA
AAGCTCTAGGTGACCTGACCGGCAAGAAAATTGTGGACCTGGGAGCCGGG
ACGGGCTTATTTCTTGTCCCCTTGGACGCGGCCGTGGGAAAGGAAGGTCA
CGTCTACGCTGTAGAGATCTCTCCAGGATTCATAGAGTTACTACAGAAGA
AGAAGGAGACGGAAGGGCTAAGAAACACCACGGTAGCTCGAGGGTCTGTC
ACAGACATGGGACTGCCAGCTGACCTTCAGGCAGATATCGTTTTGCTGGT
TGACGTCTACCATCATATTGAGTATGTACAGACGTATATGAAGAATGTGC
GGAAGGGCATGCGGAAAGGGGGCAAGCTTGTGCTGATTGACTTTCACCGG
GTGAGGAGGGAGAAGAGGAAGAGGAGGGAGAGGCAAAGTGAATGTGTGTG
CATGCTTTTCTATCGTGGGAAATTGTGTGTTGATTTGATTTCGATCAAAC
ACAGTCTCTTACGACCATTGTGTGAACAAGCCACCCTCTCTTGTGGCGGG
ACTGGTGTACATGGGTTTCGCTCTCGTATATGTCCCCTCCCCAGAGATTA
GTGCGATGAACTTTGCATGCAGCACGGTTGATATATAACTCTCTTGATCC
CGGGCATTTTTCCAACCCTAACTTTTCCATTACAGATTCCGGAGAAAATC
TGGAGCCATCCTCCCGACTGGGTCTTGTCGCACGTCCGGGCAGGCCAAGA
GGTGTTCAAGGCCGAGATCGAGGAGGCTGGGTTCGAGCTCGAGAGAGAGA
TTACTTTGTCCAACCTGCAAGAAAATTATTTTCTCATTTTTGTGAATCCA
TGATCCTTAGCGCCAGGTTTTAAAAGAAAATAGAAATGCTTGATCTGATT
GAACAGGTTGAAATGCTGTGGTGACTGAGACGTCTTATTGCAGGAGGGAG
GTTGGAAGGATGGGTCAAATTGTAGGAAATGAACCAGTGAGAAAAATGAA
CAGTAACGAATTAAATGTCTTCGATAGAG
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Coding sequence (CDS) from alignment at scaffold_11:611218..612546+

>mRNA_5804 ID=mRNA_5804|Name=jgi.p|Nanoce1779_2|590364|organism=Nannochloropsis oceanica|type=CDS|length=2133bp|location=Sequence derived from alignment at scaffold_11:611218..612546+ (Nannochloropsis oceanica)
ATGGCAGCTGCAGCGCCGGAGCCTAAGAAGGAAGGGCTGGTGGCCTTTGA
CAAAGATCACTATCCCGACGGTCTTAACGCCAATTTTTTAGAACCAGACG
CGGAGGGATTGGAAGCCAAGTATGCCGGGGCGAAGGGATTGTTCACAGAC
CCAGAGACACGGGACATAGCACGCAATGTGGCTGACATTATAAAAGCTCT
AGGTGACCTGACCGGCAAGAAAATTGTGGACCTGGGAGCCGGGACGGGCT
TATTTCTTGTCCCCTTGGACGCGGCCGTGGGAAAGGAAGGTCACGTCTAC
GCTGTAGAGATCTCTCCAGGATTCATAGAGTTACTACAGAAGAAGAAGGA
GACGGAAGGGCTAAGAAACACCACGGTAGCTCGAGGGTCTGTCACAGACA
TGGGACTGCCAGCTGACCTTCAGGCAGATATCGTTTTGCTGGTTGACGTC
TACCATCATATTGAGTATGTACAGACGTATATGAAGAATGTGCGGAAGGG
CATGCGGAAAGGGGGCAAGCTTGTGCTGATTGACTTTCACCGGATTCCGG
AGAAAATCTGGAGCCATCCTCCCGACTGGGTCTTGTCGCACGTCCGGGCA
GGCCAAGAGGTGTTCAAGGCCGAGATCGAGGAGGCTGGGTTCGAGCTCGA
GAGAGAGATTACTTTGTCCAACCTGCAAGAAAATTATTTTCTCATTTTTG
TGAATCCATGAATGGCAGCTGCAGCGCCGGAGCCTAAGAAGGAAGGGCTG
GTGGCCTTTGACAAAGATCACTATCCCGACGGTCTTAACGCCAATTTTTT
AGAACCAGACGCGGAGGGATTGGAAGCCAAGTATGCCGGGGCGAAGGGAT
TGTTCACAGACCCAGAGACACGGGACATAGCACGCAATGTGGCTGACATT
ATAAAAGCTCTAGGTGACCTGACCGGCAAGAAAATTGTGGACCTGGGAGC
CGGGACGGGCTTATTTCTTGTCCCCTTGGACGCGGCCGTGGGAAAGGAAG
GTCACGTCTACGCTGTAGAGATCTCTCCAGGATTCATAGAGTTACTACAG
AAGAAGAAGGAGACGGAAGGGCTAAGAAACACCACGGTAGCTCGAGGGTC
TGTCACAGACATGGGACTGCCAGCTGACCTTCAGGCAGATATCGTTTTGC
TGGTTGACGTCTACCATCATATTGAGTATGTACAGACGTATATGAAGAAT
GTGCGGAAGGGCATGCGGAAAGGGGGCAAGCTTGTGCTGATTGACTTTCA
CCGGATTCCGGAGAAAATCTGGAGCCATCCTCCCGACTGGGTCTTGTCGC
ACGTCCGGGCAGGCCAAGAGGTGTTCAAGGCCGAGATCGAGGAGGCTGGG
TTCGAGCTCGAGAGAGAGATTACTTTGTCCAACCTGCAAGAAAATTATTT
TCTCATTTTTGTGAATCCATGAATGGCAGCTGCAGCGCCGGAGCCTAAGA
AGGAAGGGCTGGTGGCCTTTGACAAAGATCACTATCCCGACGGTCTTAAC
GCCAATTTTTTAGAACCAGACGCGGAGGGATTGGAAGCCAAGTATGCCGG
GGCGAAGGGATTGTTCACAGACCCAGAGACACGGGACATAGCACGCAATG
TGGCTGACATTATAAAAGCTCTAGGTGACCTGACCGGCAAGAAAATTGTG
GACCTGGGAGCCGGGACGGGCTTATTTCTTGTCCCCTTGGACGCGGCCGT
GGGAAAGGAAGGTCACGTCTACGCTGTAGAGATCTCTCCAGGATTCATAG
AGTTACTACAGAAGAAGAAGGAGACGGAAGGGCTAAGAAACACCACGGTA
GCTCGAGGGTCTGTCACAGACATGGGACTGCCAGCTGACCTTCAGGCAGA
TATCGTTTTGCTGGTTGACGTCTACCATCATATTGAGTATGTACAGACGT
ATATGAAGAATGTGCGGAAGGGCATGCGGAAAGGGGGCAAGCTTGTGCTG
ATTGACTTTCACCGGATTCCGGAGAAAATCTGGAGCCATCCTCCCGACTG
GGTCTTGTCGCACGTCCGGGCAGGCCAAGAGGTGTTCAAGGCCGAGATCG
AGGAGGCTGGGTTCGAGCTCGAGAGAGAGATTACTTTGTCCAACCTGCAA
GAAAATTATTTTCTCATTTTTGTGAATCCATGA
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Synonyms
Publications