jgi.p|Nanoce1779_2|542225, mRNA_5803 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|542225
Unique Name	mRNA_5803
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1197
Alignment location	scaffold_11:609314..610923 -

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Properties


Property Name	Value
TranscriptId	542311
Track	FilteredModels2
ProteinId	542225

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:609314..610923 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|542225	gene_5803	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|542225	mRNA_5803-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5803	CDS_5803	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:609314..610923-
coding sequence from alignment at scaffold_11:609314..610923-

mRNA sequence

>mRNA_5803 ID=mRNA_5803|Name=jgi.p|Nanoce1779_2|542225|organism=Nannochloropsis oceanica|type=mRNA|length=1197bp
ACAGCACACAGCATACACCCCATTCTGGTAACAGCCATGGCGAGCAGTCT
GACGGACAAGTACAAGAAGTGGGACAATCTGGAGTTGTCTGACGATGAGG
ACGACGTTCATCCCAACATCGACAAGCAGAGTTGGTTTCGATGGAAGCAT
CAGGCACGGGTTGACCGCGAAGCCAACGAAAAGAAGGAGTCAGAGGCATT
GGAAGACAAGAACAAGCTAGCCACTGCGCGGAAGGCTGAGATCCAAGCCC
GGGTGCGGGAGATTGAGGAAGGGGTGGACGATGCAGGGAACACGGTCACG
GAGCTTGAAGGGTTGCGAGCAGAGCTCTTGGAAGTGGAAGCAGGGCTAAA
GGAACGACGGAATCGATTGCAAGAGATGGAGAGGAACAGGAAATTAAACG
TGGATAATGTTGGGACGGTGAGTAGCTGCAGCAAGAAAGTCGGTACTCCT
GACGTGGGCCCGCATTCGGAAATTGAAGCTGCGGAGAGCTATAATAACTT
TGTGCTAGGGCACGAAGATCTCCTCGAAGGTTTCAGTGAGGCAAAGTCTA
TGGACGAAGCTCAGGAGATGCTGCGTTCGCAGGGACATATTTTGCTAGCG
GAGCACTCGCAGTCATACTTGTTGTTGTCCTGCCTCGAGGATGAGATGAA
TGGGAAGCATGCCCGGATGAAGAACACAGCGCGACAAAGCCAATTACTCT
CGCATATCACTGAATTGGGGCACTCCTTAGGAAGGAGTCCGAGGGATGTG
GTGGTGCCGTTTTTCCGTCGGTTGCAGGAGCCCGAGCATCTGAAGGGCTT
CACCAACGCGGTACAGGATTTTATTGTGAAGGTCCAAAAGCGCGCAGTCG
AGAAGAGGAAGGAGATGAACGATGCGCGGGCGAGGGGGGAGGACGTGGAT
GGCTTTGTAGAAGAGGAGATGGGTGAGGGGGAGGTGTTGGGGCCCGGTGG
GTTGGACCCTGTGAAGGTTTTTCAGTCCTTGCCTGGGGAGTTGCAGGAAG
CGTTTGAGAGTCGGGACATGGAGAAATTGCGCGCGGCCTTGCGGGCTATG
CCAGAGGAGGAAGCGGCAAAGCACATGAAAGACTGTGCGGACTCAGGGTT
ATGGGTGCCGAGTGGGGGAAGTGAAGGGGCCGAGAAGGGGGAGGAAGAGA
ATGGCGGGCAGAACGCATAGAGGTCGAGGGAGGCCAGGCCAGTACTG

protein sequence of jgi.p|Nanoce1779_2|542225

>mRNA_5803-protein ID=mRNA_5803-protein|Name=jgi.p|Nanoce1779_2|542225|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MASSLTDKYKKWDNLELSDDEDDVHPNIDKQSWFRWKHQARVDREANEKK
ESEALEDKNKLATARKAEIQARVREIEEGVDDAGNTVTELEGLRAELLEV
EAGLKERRNRLQEMERNRKLNVDNVGTVSSCSKKVGTPDVGPHSEIEAAE
SYNNFVLGHEDLLEGFSEAKSMDEAQEMLRSQGHILLAEHSQSYLLLSCL
EDEMNGKHARMKNTARQSQLLSHITELGHSLGRSPRDVVVPFFRRLQEPE
HLKGFTNAVQDFIVKVQKRAVEKRKEMNDARARGEDVDGFVEEEMGEGEV
LGPGGLDPVKVFQSLPGELQEAFESRDMEKLRAALRAMPEEEAAKHMKDC
ADSGLWVPSGGSEGAEKGEEENGGQNA*

mRNA from alignment at scaffold_11:609314..610923-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5803 ID=mRNA_5803|Name=jgi.p|Nanoce1779_2|542225|organism=Nannochloropsis oceanica|type=mRNA|length=1610bp|location=Sequence derived from alignment at scaffold_11:609314..610923- (Nannochloropsis oceanica)
ACAGCACACAGCATACACCCCATTCTGGTAACAGCCATGGCGAGCAGTCT
GACGGACAAGTACAAGAAGTGGGACAATCTGGAGTTGTCTGACGATGAGG
ACGACGTTCATCCCAACATCGACAAGCAGAGTTGGTTTCGATGGAAGCAT
CAGGCACGGGTTGACCGGTGAGTGTGTAAGGTCTTGGAGTAAGGAAGGAA
AGGAGGAAAGAGGACATGGAGGAGATGGGGAGGAGGAGGAGGAGGAAAGA
TTCGGCGCTCAAACCCAAGGGTATGTTGTAAATTCATCAACTCAACCACC
TTCCTCTCCCTATCTCCCGCCTACCCACCCTACTCTATAACAGCGAAGCC
AACGAAAAGAAGGAGTCAGAGGCATTGGAAGACAAGAACAAGCTAGCCAC
TGCGCGGAAGGCTGAGATCCAAGCCCGGGTGCGGGAGATTGAGGAAGGGG
TGGACGATGCAGGGAACACGGTCACGGAGCTTGAAGGGTTGCGAGCAGAG
CTCTTGGAAGTGGAAGCAGGGCTAAAGGAACGACGGAATCGATTGCAAGA
GATGGAGAGGAACAGGAAATTAAACGTGGATAATGTTGGGACGGTGGTGA
AAGATTATACTTTCATCAATACGAGGGAGGGGTCTTCAGATGTGTTACCT
GATTCGTTGGACTTTGTTCAGAAGACGGACATTAACTGCAAGGCCGGCAG
CAGCGGCAGCAGCAGCAGCAGTACCAGCGGCACCGCAACATCTTCCTCCT
CCGCAGTCGCTTCCACCACCACCGGTATCGTTCCCCCAACGATGACGACG
ACACTGACGAAATCCCCAACCGCCAGCACTAAGAGTAGCTGCAGCAAGAA
AGTCGGTACTCCTGACGTGGGCCCGCATTCGGAAATTGAAGCTGCGGAGA
GCTATAATAACTTTGTGCTAGGGCACGAAGATCTCCTCGAAGGTTTCAGT
GAGGCAAAGTCTATGGACGAAGCTCAGGAGATGCTGCGTTCGCAGGGACA
TATTTTGCTAGCGGAGCACTCGCAGTCATACTTGTTGTTGTCCTGCCTCG
AGGATGAGATGAATGGGAAGCATGCCCGGATGAAGAACACAGCGCGACAA
AGCCAATTACTCTCGCATATCACTGAATTGGGGCACTCCTTAGGAAGGAG
TCCGAGGGATGTGGTGGTGCCGTTTTTCCGTCGGTTGCAGGAGCCCGAGC
ATCTGAAGGGCTTCACCAACGCGGTACAGGATTTTATTGTGAAGGTCCAA
AAGCGCGCAGTCGAGAAGAGGAAGGAGATGAACGATGCGCGGGCGAGGGG
GGAGGACGTGGATGGCTTTGTAGAAGAGGAGATGGGTGAGGGGGAGGTGT
TGGGGCCCGGTGGGTTGGACCCTGTGAAGGTTTTTCAGTCCTTGCCTGGG
GAGTTGCAGGAAGCGTTTGAGAGTCGGGACATGGAGAAATTGCGCGCGGC
CTTGCGGGCTATGCCAGAGGAGGAAGCGGCAAAGCACATGAAAGACTGTG
CGGACTCAGGGTTATGGGTGCCGAGTGGGGGAAGTGAAGGGGCCGAGAAG
GGGGAGGAAGAGAATGGCGGGCAGAACGCATAGAGGTCGAGGGAGGCCAG
GCCAGTACTG

Coding sequence (CDS) from alignment at scaffold_11:609314..610923-

>mRNA_5803 ID=mRNA_5803|Name=jgi.p|Nanoce1779_2|542225|organism=Nannochloropsis oceanica|type=CDS|length=3402bp|location=Sequence derived from alignment at scaffold_11:609314..610923- (Nannochloropsis oceanica)
AGTAGCTGCAGCAAGAAAGTCGGTACTCCTGACGTGGGCCCGCATTCGGA
AATTGAAGCTGCGGAGAGCTATAATAACTTTGTGCTAGGGCACGAAGATC
TCCTCGAAGGTTTCAGTGAGGCAAAGTCTATGGACGAAGCTCAGGAGATG
CTGCGTTCGCAGGGACATATTTTGCTAGCGGAGCACTCGCAGTCATACTT
GTTGTTGTCCTGCCTCGAGGATGAGATGAATGGGAAGCATGCCCGGATGA
AGAACACAGCGCGACAAAGCCAATTACTCTCGCATATCACTGAATTGGGG
CACTCCTTAGGAAGGAGTCCGAGGGATGTGGTGGTGCCGTTTTTCCGTCG
GTTGCAGGAGCCCGAGCATCTGAAGGGCTTCACCAACGCGGTACAGGATT
TTATTGTGAAGGTCCAAAAGCGCGCAGTCGAGAAGAGGAAGGAGATGAAC
GATGCGCGGGCGAGGGGGGAGGACGTGGATGGCTTTGTAGAAGAGGAGAT
GGGTGAGGGGGAGGTGTTGGGGCCCGGTGGGTTGGACCCTGTGAAGGTTT
TTCAGTCCTTGCCTGGGGAGTTGCAGGAAGCGTTTGAGAGTCGGGACATG
GAGAAATTGCGCGCGGCCTTGCGGGCTATGCCAGAGGAGGAAGCGGCAAA
GCACATGAAAGACTGTGCGGACTCAGGGTTATGGGTGCCGAGTGGGGGAA
GTGAAGGGGCCGAGAAGGGGGAGGAAGAGAATGGCGGGCAGAACGCATAG
CGAAGCCAACGAAAAGAAGGAGTCAGAGGCATTGGAAGACAAGAACAAGC
TAGCCACTGCGCGGAAGGCTGAGATCCAAGCCCGGGTGCGGGAGATTGAG
GAAGGGGTGGACGATGCAGGGAACACGGTCACGGAGCTTGAAGGGTTGCG
AGCAGAGCTCTTGGAAGTGGAAGCAGGGCTAAAGGAACGACGGAATCGAT
TGCAAGAGATGGAGAGGAACAGGAAATTAAACGTGGATAATGTTGGGACG
GTGATGGCGAGCAGTCTGACGGACAAGTACAAGAAGTGGGACAATCTGGA
GTTGTCTGACGATGAGGACGACGTTCATCCCAACATCGACAAGCAGAGTT
GGTTTCGATGGAAGCATCAGGCACGGGTTGACCGAGTAGCTGCAGCAAGA
AAGTCGGTACTCCTGACGTGGGCCCGCATTCGGAAATTGAAGCTGCGGAG
AGCTATAATAACTTTGTGCTAGGGCACGAAGATCTCCTCGAAGGTTTCAG
TGAGGCAAAGTCTATGGACGAAGCTCAGGAGATGCTGCGTTCGCAGGGAC
ATATTTTGCTAGCGGAGCACTCGCAGTCATACTTGTTGTTGTCCTGCCTC
GAGGATGAGATGAATGGGAAGCATGCCCGGATGAAGAACACAGCGCGACA
AAGCCAATTACTCTCGCATATCACTGAATTGGGGCACTCCTTAGGAAGGA
GTCCGAGGGATGTGGTGGTGCCGTTTTTCCGTCGGTTGCAGGAGCCCGAG
CATCTGAAGGGCTTCACCAACGCGGTACAGGATTTTATTGTGAAGGTCCA
AAAGCGCGCAGTCGAGAAGAGGAAGGAGATGAACGATGCGCGGGCGAGGG
GGGAGGACGTGGATGGCTTTGTAGAAGAGGAGATGGGTGAGGGGGAGGTG
TTGGGGCCCGGTGGGTTGGACCCTGTGAAGGTTTTTCAGTCCTTGCCTGG
GGAGTTGCAGGAAGCGTTTGAGAGTCGGGACATGGAGAAATTGCGCGCGG
CCTTGCGGGCTATGCCAGAGGAGGAAGCGGCAAAGCACATGAAAGACTGT
GCGGACTCAGGGTTATGGGTGCCGAGTGGGGGAAGTGAAGGGGCCGAGAA
GGGGGAGGAAGAGAATGGCGGGCAGAACGCATAGCGAAGCCAACGAAAAG
AAGGAGTCAGAGGCATTGGAAGACAAGAACAAGCTAGCCACTGCGCGGAA
GGCTGAGATCCAAGCCCGGGTGCGGGAGATTGAGGAAGGGGTGGACGATG
CAGGGAACACGGTCACGGAGCTTGAAGGGTTGCGAGCAGAGCTCTTGGAA
GTGGAAGCAGGGCTAAAGGAACGACGGAATCGATTGCAAGAGATGGAGAG
GAACAGGAAATTAAACGTGGATAATGTTGGGACGGTGATGGCGAGCAGTC
TGACGGACAAGTACAAGAAGTGGGACAATCTGGAGTTGTCTGACGATGAG
GACGACGTTCATCCCAACATCGACAAGCAGAGTTGGTTTCGATGGAAGCA
TCAGGCACGGGTTGACCGAGTAGCTGCAGCAAGAAAGTCGGTACTCCTGA
CGTGGGCCCGCATTCGGAAATTGAAGCTGCGGAGAGCTATAATAACTTTG
TGCTAGGGCACGAAGATCTCCTCGAAGGTTTCAGTGAGGCAAAGTCTATG
GACGAAGCTCAGGAGATGCTGCGTTCGCAGGGACATATTTTGCTAGCGGA
GCACTCGCAGTCATACTTGTTGTTGTCCTGCCTCGAGGATGAGATGAATG
GGAAGCATGCCCGGATGAAGAACACAGCGCGACAAAGCCAATTACTCTCG
CATATCACTGAATTGGGGCACTCCTTAGGAAGGAGTCCGAGGGATGTGGT
GGTGCCGTTTTTCCGTCGGTTGCAGGAGCCCGAGCATCTGAAGGGCTTCA
CCAACGCGGTACAGGATTTTATTGTGAAGGTCCAAAAGCGCGCAGTCGAG
AAGAGGAAGGAGATGAACGATGCGCGGGCGAGGGGGGAGGACGTGGATGG
CTTTGTAGAAGAGGAGATGGGTGAGGGGGAGGTGTTGGGGCCCGGTGGGT
TGGACCCTGTGAAGGTTTTTCAGTCCTTGCCTGGGGAGTTGCAGGAAGCG
TTTGAGAGTCGGGACATGGAGAAATTGCGCGCGGCCTTGCGGGCTATGCC
AGAGGAGGAAGCGGCAAAGCACATGAAAGACTGTGCGGACTCAGGGTTAT
GGGTGCCGAGTGGGGGAAGTGAAGGGGCCGAGAAGGGGGAGGAAGAGAAT
GGCGGGCAGAACGCATAGCGAAGCCAACGAAAAGAAGGAGTCAGAGGCAT
TGGAAGACAAGAACAAGCTAGCCACTGCGCGGAAGGCTGAGATCCAAGCC
CGGGTGCGGGAGATTGAGGAAGGGGTGGACGATGCAGGGAACACGGTCAC
GGAGCTTGAAGGGTTGCGAGCAGAGCTCTTGGAAGTGGAAGCAGGGCTAA
AGGAACGACGGAATCGATTGCAAGAGATGGAGAGGAACAGGAAATTAAAC
GTGGATAATGTTGGGACGGTGATGGCGAGCAGTCTGACGGACAAGTACAA
GAAGTGGGACAATCTGGAGTTGTCTGACGATGAGGACGACGTTCATCCCA
ACATCGACAAGCAGAGTTGGTTTCGATGGAAGCATCAGGCACGGGTTGAC
CG

Synonyms

Publications