Properties
| Property Name | Value |
|---|
| TranscriptId | 590440 |
| Track | FilteredModels2 |
| ProteinId | 590354 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:602546..605239 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5801 ID=mRNA_5801|Name=jgi.p|Nanoce1779_2|590354|organism=Nannochloropsis oceanica|type=mRNA|length=2300bp
AGGCCCGTGACTGAGCCCAAGGCCGGCCACCACACGTGAGAGCGCGCCGC
GAGTGCAGCCAATCCGTTGGGCTAAGGAGACAGTCTGAATTCAGACGAGC
CACCACGGTGCGTCGATACACCACATCACAGCACTAGCACTCCCGACTCA
CCACCACGAACGACGTACGAGCAATCTAAGGCCATGTCTGACATTGAGGA
ATTGGTGCAGCTGCTAGGGCAACCAGGGGAGGACTTGGATTGGGGAGGAG
AGCACTTCTGTTTCCTCGAGTATGAGCACGAGCAAGCCGTCGTGGCCAAC
CAACAACTCCACCATCCGCAACAAGACATCCACCAACCACCACACATACT
GGCCTCGGCAGACTGCTCGTCGGGTAACAAGAGGCGTATGTCGGAGGCTT
TTCAATGCCAAGCCTACCCCTCACACTCCTCCGGTCCTGTCCTCGTCCCT
GCCCCCGCTCCCGCCTGCCTGCCCATCATCCTCAACAACAGTAACAGCAA
CAGTAGCAACAGTAGCAGCAACAGCAGTGTGAGCAGCAACAGCACCGCCA
CCGGCCGGAGCAGCAGCCGTAGCAGCAGGCACGCGCAGCTTTTGTCAGTG
AAATCAAAGGAGGATGATGATTCAGTGTCGTTCTTAGCGGTGGCGGAGTC
ATCGAAGGCTAGCACGCCCACCTCTTCATCTTCATACTGCTTTTCTGAAG
AGGCGGAGCAGGAACAGGAGCGGCAGGAGCAGAGCAATGGGAAAGCTGCA
GCGGCAGTAGGAGTGAGGACTGAGGCGGTGGCACAAAGAATGGAGAGGAA
GAAGACGAGGGAGAAGATGCGTAGACAGGAGGTAAATGATAAGCTCAACG
AGTTGATGGAAGTACTGGTGGAGGCTGATAGCAAGGGGCAGACACCCGCG
GAGAAGCAGCAGCAGCAGGCCCAGGCGGCAAGTATTGACAAGGGGAATTT
CCGGGTGGATGTGCTGTCGAGGGCCGTGAGGGTTATCAAGAGATTGAATG
AGGAGGTGAAAGCCGGGCAAGCCGAGGTGGAGCGTCTGCGGGCTCAGCTC
GAGCAGACTTTCCTTCAGCCCAAGCGGGAGCTGCAGCCCCAGGAGCAGCA
GCAGCAGTCGCACCAACAGGAGACAGCGGTGGCCGATTCTTCTTCCGCGG
AACGCCACAGCAGGCCCTGCAATACATCCACCTCGAGCAGCAAGAACAGC
AGCAACAGCAGCAGCACCAAGCTGAATCAGTCCATGACGTGGGTGACTGT
GCCAATGTGGATGCCTTCTGGCCCCAATGTCGCGCATGGAGACCACGCGG
CAGCCATGGCCCAGGCGAAGGGAATCATGCTTGATGCGAATAACGGGGGG
TATTGTGGCGCGAATGGAGCTACTCCCTTCCCATATGCTACAATGCCTTT
ATTTGTCCCTCAGCACGCGCAGGGGCATATTCAGAATGGAGGGATGGTAG
GGATGCCTTCCATGATGATGCCAGCCGGGGGTGGTGGGTTAGTGGAGATG
GGATTTGGTGGGGATGACGAGGGAGGGGTCGGAGCAGGACAGACAACTTC
TTTTGCCGGGTTGGAGGTATGGGGGGAAGAGGCGCCGACACATGCGCCAT
GCGCATGAGCGCTAGGTGTGGAATGCGAGCGTTTGTACCTTCGTGTCTCC
TTTCAAAAAAAAGACCGCCCACTATTCGTGGCCTTAAAAGAGGAAAGGGG
GTCAAGACGGGAGGCTGCGAGGACCTACTAGAACGGGTTGAAGAGGATAT
GGGGAGAGAACGTAGATTTTGTCTTGTTTTCTGTTCTGTCGAGTTGGACA
GGACAGGAAGCAGAAGTGAAGTGTTTGTGTAATCGTGCACGTACGTCAAG
CAGAACGGAAAGAGATGAAGGAGCGAAGCAAGGGAATGGCAAGAGGAAAG
CTTGAAAAGTTGTCGCTGCGCGTCTTGTGTCAGAGAAGACAGAAGAGAGG
CATAGAGGATGCGGGGGAGGAAACGGTAGTTTAGAGAAGGGATACAATCA
CTTTCGTGTGCACAGCCTTGTTAAAAAAGGCACACACTGAAGTAGCAGTA
AAAGCCGCAGAGGAGAGAGGAGAGATGCTCTGGGTGCAAGCGGTACCAAT
AGGAGCCCTAGCTTGACTGAGGGGTGTTATTTCCCATGCCAGATTCCAGT
ATTGACAACATTTATAATTTATGACATTCGACAGAGGACGGATACGAGTA
GTATTCTAAAAGGGGAAAAAACGTGCAACGAAACAAACCAACACATTCGT
GGTGGATGGAATTGTCATCTAAATTGATTTTAAACCGCTGCAAATCACCT back to topprotein sequence of jgi.p|Nanoce1779_2|590354 >mRNA_5801-protein ID=mRNA_5801-protein|Name=jgi.p|Nanoce1779_2|590354|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MSDIEELVQLLGQPGEDLDWGGEHFCFLEYEHEQAVVANQQLHHPQQDIH
QPPHILASADCSSGNKRRMSEAFQCQAYPSHSSGPVLVPAPAPACLPIIL
NNSNSNSSNSSSNSSVSSNSTATGRSSSRSSRHAQLLSVKSKEDDDSVSF
LAVAESSKASTPTSSSSYCFSEEAEQEQERQEQSNGKAAAAVGVRTEAVA
QRMERKKTREKMRRQEVNDKLNELMEVLVEADSKGQTPAEKQQQQAQAAS
IDKGNFRVDVLSRAVRVIKRLNEEVKAGQAEVERLRAQLEQTFLQPKREL
QPQEQQQQSHQQETAVADSSSAERHSRPCNTSTSSSKNSSNSSSTKLNQS
MTWVTVPMWMPSGPNVAHGDHAAAMAQAKGIMLDANNGGYCGANGATPFP
YATMPLFVPQHAQGHIQNGGMVGMPSMMMPAGGGGLVEMGFGGDDEGGVG
AGQTTSFAGLEVWGEEAPTHAPCA* back to topmRNA from alignment at scaffold_11:602546..605239- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5801 ID=mRNA_5801|Name=jgi.p|Nanoce1779_2|590354|organism=Nannochloropsis oceanica|type=mRNA|length=2694bp|location=Sequence derived from alignment at scaffold_11:602546..605239- (Nannochloropsis oceanica)
AGGCCCGTGACTGAGCCCAAGGCCGGCCACCACACGTGAGAGCGCGCCGC
GAGTGCAGCCAATCCGTTGGGCTAAGGAGACAGTCTGAATTCAGACGAGC
CACCACGGTGCGTCGATACACCACATCACAGCACTAGCACTCCCGACTCA
CCACCACGAACGACGTACGAGCAATCTAAGGCCATGTCTGACATTGAGGA
ATTGGTGCAGCTGCTAGGGCAACCAGGGGAGGACTTGGATTGGGGAGGAG
AGCACTTCTGTTTCCTCGAGTATGAGCACGAGCAAGCCGTCGTGGCCAAC
CAACAACTCCACCATCCGCAACAAGACATCCACCAACCACCACACATACT
GTACGTTGATAGAGGACAGCCATCCGCTCGCCCCTCCCCTCCGCCCCTCC
CCCTTTTCCCACCCACCCACCCAAGATTCCTTTGTCAACCTTATTCACCG
TATCGCCCCCCTCCTTCTCGCTTCACTGATTTGCAGGGCCTCGGCAGACT
GCTCGTCGGGTAACAAGAGGTAAGTAGAAGGAAGAGAAGAGCGAGAAGGG
ATAGATGGCTGCTTGAAAGGATGAGGGTTGATGACCAATTACTTGACAGA
TGCCATGAGGGAGTTGGCGAGAGAACCCGTAGGGGACAGAAGCTGTGCTG
TGTGTCGTGCTTGCGTTGCACGGCCAGCATACACGAAATTCCTGCCCTCC
CTCCACACACAACAATTACTCGCCTGCTCTTTTTTCCAATTTCCACCCAC
CCACCCTTCACCACTCTCACTACACAGGCGTATGTCGGAGGCTTTTCAAT
GCCAAGCCTACCCCTCACACTCCTCCGGTCCTGTCCTCGTCCCTGCCCCC
GCTCCCGCCTGCCTGCCCATCATCCTCAACAACAGTAACAGCAACAGTAG
CAACAGTAGCAGCAACAGCAGTGTGAGCAGCAACAGCACCGCCACCGGCC
GGAGCAGCAGCCGTAGCAGCAGGCACGCGCAGCTTTTGTCAGTGAAATCA
AAGGAGGATGATGATTCAGTGTCGTTCTTAGCGGTGGCGGAGTCATCGAA
GGCTAGCACGCCCACCTCTTCATCTTCATACTGCTTTTCTGAAGAGGCGG
AGCAGGAACAGGAGCGGCAGGAGCAGAGCAATGGGAAAGCTGCAGCGGCA
GTAGGAGTGAGGACTGAGGCGGTGGCACAAAGAATGGAGAGGAAGAAGAC
GAGGGAGAAGATGCGTAGACAGGAGGTAAATGATAAGCTCAACGAGTTGA
TGGAAGTACTGGTGGAGGCTGATAGCAAGGGGCAGACACCCGCGGAGAAG
CAGCAGCAGCAGGCCCAGGCGGCAAGTATTGACAAGGGGAATTTCCGGGT
GGATGTGCTGTCGAGGGCCGTGAGGGTTATCAAGAGATTGAATGAGGAGG
TGAAAGCCGGGCAAGCCGAGGTGGAGCGTCTGCGGGCTCAGCTCGAGCAG
ACTTTCCTTCAGCCCAAGCGGGAGCTGCAGCCCCAGGAGCAGCAGCAGCA
GTCGCACCAACAGGAGACAGCGGTGGCCGATTCTTCTTCCGCGGAACGCC
ACAGCAGGCCCTGCAATACATCCACCTCGAGCAGCAAGAACAGCAGCAAC
AGCAGCAGCACCAAGCTGAATCAGTCCATGACGTGGGTGACTGTGCCAAT
GTGGATGCCTTCTGGCCCCAATGTCGCGCATGGAGACCACGCGGCAGCCA
TGGCCCAGGCGAAGGGAATCATGCTTGATGCGAATAACGGGGGGTATTGT
GGCGCGAATGGAGCTACTCCCTTCCCATATGCTACAATGCCTTTATTTGT
CCCTCAGCACGCGCAGGGGCATATTCAGAATGGAGGGATGGTAGGGATGC
CTTCCATGATGATGCCAGCCGGGGGTGGTGGGTTAGTGGAGATGGGATTT
GGTGGGGATGACGAGGGAGGGGTCGGAGCAGGACAGACAACTTCTTTTGC
CGGGTTGGAGGTATGGGGGGAAGAGGCGCCGACACATGCGCCATGCGCAT
GAGCGCTAGGTGTGGAATGCGAGCGTTTGTACCTTCGTGTCTCCTTTCAA
AAAAAAGACCGCCCACTATTCGTGGCCTTAAAAGAGGAAAGGGGGTCAAG
ACGGGAGGCTGCGAGGACCTACTAGAACGGGTTGAAGAGGATATGGGGAG
AGAACGTAGATTTTGTCTTGTTTTCTGTTCTGTCGAGTTGGACAGGACAG
GAAGCAGAAGTGAAGTGTTTGTGTAATCGTGCACGTACGTCAAGCAGAAC
GGAAAGAGATGAAGGAGCGAAGCAAGGGAATGGCAAGAGGAAAGCTTGAA
AAGTTGTCGCTGCGCGTCTTGTGTCAGAGAAGACAGAAGAGAGGCATAGA
GGATGCGGGGGAGGAAACGGTAGTTTAGAGAAGGGATACAATCACTTTCG
TGTGCACAGCCTTGTTAAAAAAGGCACACACTGAAGTAGCAGTAAAAGCC
GCAGAGGAGAGAGGAGAGATGCTCTGGGTGCAAGCGGTACCAATAGGAGC
CCTAGCTTGACTGAGGGGTGTTATTTCCCATGCCAGATTCCAGTATTGAC
AACATTTATAATTTATGACATTCGACAGAGGACGGATACGAGTAGTATTC
TAAAAGGGGAAAAAACGTGCAACGAAACAAACCAACACATTCGTGGTGGA
TGGAATTGTCATCTAAATTGATTTTAAACCGCTGCAAATCACCT back to topCoding sequence (CDS) from alignment at scaffold_11:602546..605239- >mRNA_5801 ID=mRNA_5801|Name=jgi.p|Nanoce1779_2|590354|organism=Nannochloropsis oceanica|type=CDS|length=4275bp|location=Sequence derived from alignment at scaffold_11:602546..605239- (Nannochloropsis oceanica)
GCGTATGTCGGAGGCTTTTCAATGCCAAGCCTACCCCTCACACTCCTCCG
GTCCTGTCCTCGTCCCTGCCCCCGCTCCCGCCTGCCTGCCCATCATCCTC
AACAACAGTAACAGCAACAGTAGCAACAGTAGCAGCAACAGCAGTGTGAG
CAGCAACAGCACCGCCACCGGCCGGAGCAGCAGCCGTAGCAGCAGGCACG
CGCAGCTTTTGTCAGTGAAATCAAAGGAGGATGATGATTCAGTGTCGTTC
TTAGCGGTGGCGGAGTCATCGAAGGCTAGCACGCCCACCTCTTCATCTTC
ATACTGCTTTTCTGAAGAGGCGGAGCAGGAACAGGAGCGGCAGGAGCAGA
GCAATGGGAAAGCTGCAGCGGCAGTAGGAGTGAGGACTGAGGCGGTGGCA
CAAAGAATGGAGAGGAAGAAGACGAGGGAGAAGATGCGTAGACAGGAGGT
AAATGATAAGCTCAACGAGTTGATGGAAGTACTGGTGGAGGCTGATAGCA
AGGGGCAGACACCCGCGGAGAAGCAGCAGCAGCAGGCCCAGGCGGCAAGT
ATTGACAAGGGGAATTTCCGGGTGGATGTGCTGTCGAGGGCCGTGAGGGT
TATCAAGAGATTGAATGAGGAGGTGAAAGCCGGGCAAGCCGAGGTGGAGC
GTCTGCGGGCTCAGCTCGAGCAGACTTTCCTTCAGCCCAAGCGGGAGCTG
CAGCCCCAGGAGCAGCAGCAGCAGTCGCACCAACAGGAGACAGCGGTGGC
CGATTCTTCTTCCGCGGAACGCCACAGCAGGCCCTGCAATACATCCACCT
CGAGCAGCAAGAACAGCAGCAACAGCAGCAGCACCAAGCTGAATCAGTCC
ATGACGTGGGTGACTGTGCCAATGTGGATGCCTTCTGGCCCCAATGTCGC
GCATGGAGACCACGCGGCAGCCATGGCCCAGGCGAAGGGAATCATGCTTG
ATGCGAATAACGGGGGGTATTGTGGCGCGAATGGAGCTACTCCCTTCCCA
TATGCTACAATGCCTTTATTTGTCCCTCAGCACGCGCAGGGGCATATTCA
GAATGGAGGGATGGTAGGGATGCCTTCCATGATGATGCCAGCCGGGGGTG
GTGGGTTAGTGGAGATGGGATTTGGTGGGGATGACGAGGGAGGGGTCGGA
GCAGGACAGACAACTTCTTTTGCCGGGTTGGAGGTATGGGGGGAAGAGGC
GCCGACACATGCGCCATGCGCATGAGGCCTCGGCAGACTGCTCGTCGGGT
AACAAGAGATGTCTGACATTGAGGAATTGGTGCAGCTGCTAGGGCAACCA
GGGGAGGACTTGGATTGGGGAGGAGAGCACTTCTGTTTCCTCGAGTATGA
GCACGAGCAAGCCGTCGTGGCCAACCAACAACTCCACCATCCGCAACAAG
ACATCCACCAACCACCACACATACTGCGTATGTCGGAGGCTTTTCAATGC
CAAGCCTACCCCTCACACTCCTCCGGTCCTGTCCTCGTCCCTGCCCCCGC
TCCCGCCTGCCTGCCCATCATCCTCAACAACAGTAACAGCAACAGTAGCA
ACAGTAGCAGCAACAGCAGTGTGAGCAGCAACAGCACCGCCACCGGCCGG
AGCAGCAGCCGTAGCAGCAGGCACGCGCAGCTTTTGTCAGTGAAATCAAA
GGAGGATGATGATTCAGTGTCGTTCTTAGCGGTGGCGGAGTCATCGAAGG
CTAGCACGCCCACCTCTTCATCTTCATACTGCTTTTCTGAAGAGGCGGAG
CAGGAACAGGAGCGGCAGGAGCAGAGCAATGGGAAAGCTGCAGCGGCAGT
AGGAGTGAGGACTGAGGCGGTGGCACAAAGAATGGAGAGGAAGAAGACGA
GGGAGAAGATGCGTAGACAGGAGGTAAATGATAAGCTCAACGAGTTGATG
GAAGTACTGGTGGAGGCTGATAGCAAGGGGCAGACACCCGCGGAGAAGCA
GCAGCAGCAGGCCCAGGCGGCAAGTATTGACAAGGGGAATTTCCGGGTGG
ATGTGCTGTCGAGGGCCGTGAGGGTTATCAAGAGATTGAATGAGGAGGTG
AAAGCCGGGCAAGCCGAGGTGGAGCGTCTGCGGGCTCAGCTCGAGCAGAC
TTTCCTTCAGCCCAAGCGGGAGCTGCAGCCCCAGGAGCAGCAGCAGCAGT
CGCACCAACAGGAGACAGCGGTGGCCGATTCTTCTTCCGCGGAACGCCAC
AGCAGGCCCTGCAATACATCCACCTCGAGCAGCAAGAACAGCAGCAACAG
CAGCAGCACCAAGCTGAATCAGTCCATGACGTGGGTGACTGTGCCAATGT
GGATGCCTTCTGGCCCCAATGTCGCGCATGGAGACCACGCGGCAGCCATG
GCCCAGGCGAAGGGAATCATGCTTGATGCGAATAACGGGGGGTATTGTGG
CGCGAATGGAGCTACTCCCTTCCCATATGCTACAATGCCTTTATTTGTCC
CTCAGCACGCGCAGGGGCATATTCAGAATGGAGGGATGGTAGGGATGCCT
TCCATGATGATGCCAGCCGGGGGTGGTGGGTTAGTGGAGATGGGATTTGG
TGGGGATGACGAGGGAGGGGTCGGAGCAGGACAGACAACTTCTTTTGCCG
GGTTGGAGGTATGGGGGGAAGAGGCGCCGACACATGCGCCATGCGCATGA
GGCCTCGGCAGACTGCTCGTCGGGTAACAAGAGATGTCTGACATTGAGGA
ATTGGTGCAGCTGCTAGGGCAACCAGGGGAGGACTTGGATTGGGGAGGAG
AGCACTTCTGTTTCCTCGAGTATGAGCACGAGCAAGCCGTCGTGGCCAAC
CAACAACTCCACCATCCGCAACAAGACATCCACCAACCACCACACATACT
GCGTATGTCGGAGGCTTTTCAATGCCAAGCCTACCCCTCACACTCCTCCG
GTCCTGTCCTCGTCCCTGCCCCCGCTCCCGCCTGCCTGCCCATCATCCTC
AACAACAGTAACAGCAACAGTAGCAACAGTAGCAGCAACAGCAGTGTGAG
CAGCAACAGCACCGCCACCGGCCGGAGCAGCAGCCGTAGCAGCAGGCACG
CGCAGCTTTTGTCAGTGAAATCAAAGGAGGATGATGATTCAGTGTCGTTC
TTAGCGGTGGCGGAGTCATCGAAGGCTAGCACGCCCACCTCTTCATCTTC
ATACTGCTTTTCTGAAGAGGCGGAGCAGGAACAGGAGCGGCAGGAGCAGA
GCAATGGGAAAGCTGCAGCGGCAGTAGGAGTGAGGACTGAGGCGGTGGCA
CAAAGAATGGAGAGGAAGAAGACGAGGGAGAAGATGCGTAGACAGGAGGT
AAATGATAAGCTCAACGAGTTGATGGAAGTACTGGTGGAGGCTGATAGCA
AGGGGCAGACACCCGCGGAGAAGCAGCAGCAGCAGGCCCAGGCGGCAAGT
ATTGACAAGGGGAATTTCCGGGTGGATGTGCTGTCGAGGGCCGTGAGGGT
TATCAAGAGATTGAATGAGGAGGTGAAAGCCGGGCAAGCCGAGGTGGAGC
GTCTGCGGGCTCAGCTCGAGCAGACTTTCCTTCAGCCCAAGCGGGAGCTG
CAGCCCCAGGAGCAGCAGCAGCAGTCGCACCAACAGGAGACAGCGGTGGC
CGATTCTTCTTCCGCGGAACGCCACAGCAGGCCCTGCAATACATCCACCT
CGAGCAGCAAGAACAGCAGCAACAGCAGCAGCACCAAGCTGAATCAGTCC
ATGACGTGGGTGACTGTGCCAATGTGGATGCCTTCTGGCCCCAATGTCGC
GCATGGAGACCACGCGGCAGCCATGGCCCAGGCGAAGGGAATCATGCTTG
ATGCGAATAACGGGGGGTATTGTGGCGCGAATGGAGCTACTCCCTTCCCA
TATGCTACAATGCCTTTATTTGTCCCTCAGCACGCGCAGGGGCATATTCA
GAATGGAGGGATGGTAGGGATGCCTTCCATGATGATGCCAGCCGGGGGTG
GTGGGTTAGTGGAGATGGGATTTGGTGGGGATGACGAGGGAGGGGTCGGA
GCAGGACAGACAACTTCTTTTGCCGGGTTGGAGGTATGGGGGGAAGAGGC
GCCGACACATGCGCCATGCGCATGAGGCCTCGGCAGACTGCTCGTCGGGT
AACAAGAGATGTCTGACATTGAGGAATTGGTGCAGCTGCTAGGGCAACCA
GGGGAGGACTTGGATTGGGGAGGAGAGCACTTCTGTTTCCTCGAGTATGA
GCACGAGCAAGCCGTCGTGGCCAACCAACAACTCCACCATCCGCAACAAG
ACATCCACCAACCACCACACATACT back to top
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