jgi.p|Nanoce1779_2|566134, mRNA_5800 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566134
Unique NamemRNA_5800
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1212
Alignment locationscaffold_11:600662..601873 -

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Properties
Property NameValue
TranscriptId566220
TrackFilteredModels2
ProteinId566134
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:600662..601873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566134gene_5800Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5800CDS_5800Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566134mRNA_5800-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5800 ID=mRNA_5800|Name=jgi.p|Nanoce1779_2|566134|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp
ATGACGGTTTTCATTAGTGCCCACACAAAGCTAATGCAATCGATATGCCC
AAGGCTTCTTAGCTGTCGCATGTATTCCGTCGCATGGGAAAGCCAAATGG
CATCGCTCGATGACACGGCGTTGCTGCTGCGGGAGGAAGAATTTGGTGCT
CTCTTAGCCAGAAGTAAAGACCCGGACGATCCAAGTGTTGGCATCGCCAC
CTCTTGCGAATCAATACAAAATGATACTTCGCTATCTGTCCTTCTCCTCC
CCTTGCATTCTAGGGAAGGGACGGATTGGTTAGTATTATCCTTCAACCCT
TCTGCACAAAGCAGAGAAACCCAATACACTCTTCTCGACAACTGCATCAC
TTGTCTGGCTGCTGCCTTGAACCTAACATCCCACCATCATCAAGACAAGA
AGCAAAACCCTGCGCCCCTCGCCCAATTTTTACAAGCAGTTCGGACGCCC
TTGGGCGCTTTAAGGACGTTCAGTAAATTACTGCTGCGTCGAATGGAGCG
GGACCGGGAAGGACTCAGTTACGAGCTGGCCAAAAATGTCTTGATTCAAA
GTGACCAGCTTGTGGAGCTGTTGCTGGATGATACATCGGAAAGGATGGAA
TCAGGAGGAGGAGGAGGAACAGGGTGGGAGATGATGAATGCCCAGGATGG
GAGTAGAAGCGAGGAGGAGATGGAGGAGATGGAGGAGGCGGAGGCGCGGG
GAGGGTTGATGAGGAGGGAGGGCTTGGGCAGAAGCCGCTCGTCAACTTTG
TGCGAATTGCGGGGTGTTTTGGCCCCTGTTGTGAGTGCAGCACAATTAGT
GAGCAGTCGGGATGGGATTAGCTTTTTCTTTTTCCAGGAGGAGGATTTGC
CAAAGCACGTGCCTTTGCTGGACGAGACTCTGCTTCAAGAAACGCTGGGT
ACCCTGGTGGAGTCTGCCTTGGGGTACGCTTTGGAGGGAGCTGTTGCAGG
GGGTCAAAAGCCTGTGGTGACGCTGGATGTGCGGCGCTTAGGTGGTGGTG
GTGCTGAAGAAGGGCCATCAACGACTTTGGTGTTCCTTGTGCAAGACAAC
GGGGTGGCGGCGAGCACTACTCACAGCTCTCCCGAGTTCGGCACTATTCG
AAAGGACGTGGAGCGGATGGGCGCTCGCTTGGAAATTCGGGCTTCCAAGG
CATTGGGAGGCACACAAGCGAGCTTGTACATTGATTGTAGTGCGAGGAAA
GCATATCAATAG
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protein sequence of jgi.p|Nanoce1779_2|566134

>mRNA_5800-protein ID=mRNA_5800-protein|Name=jgi.p|Nanoce1779_2|566134|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MTVFISAHTKLMQSICPRLLSCRMYSVAWESQMASLDDTALLLREEEFGA
LLARSKDPDDPSVGIATSCESIQNDTSLSVLLLPLHSREGTDWLVLSFNP
SAQSRETQYTLLDNCITCLAAALNLTSHHHQDKKQNPAPLAQFLQAVRTP
LGALRTFSKLLLRRMERDREGLSYELAKNVLIQSDQLVELLLDDTSERME
SGGGGGTGWEMMNAQDGSRSEEEMEEMEEAEARGGLMRREGLGRSRSSTL
CELRGVLAPVVSAAQLVSSRDGISFFFFQEEDLPKHVPLLDETLLQETLG
TLVESALGYALEGAVAGGQKPVVTLDVRRLGGGGAEEGPSTTLVFLVQDN
GVAASTTHSSPEFGTIRKDVERMGARLEIRASKALGGTQASLYIDCSARK
AYQ*
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mRNA from alignment at scaffold_11:600662..601873-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5800 ID=mRNA_5800|Name=jgi.p|Nanoce1779_2|566134|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp|location=Sequence derived from alignment at scaffold_11:600662..601873- (Nannochloropsis oceanica)
ATGACGGTTTTCATTAGTGCCCACACAAAGCTAATGCAATCGATATGCCC
AAGGCTTCTTAGCTGTCGCATGTATTCCGTCGCATGGGAAAGCCAAATGG
CATCGCTCGATGACACGGCGTTGCTGCTGCGGGAGGAAGAATTTGGTGCT
CTCTTAGCCAGAAGTAAAGACCCGGACGATCCAAGTGTTGGCATCGCCAC
CTCTTGCGAATCAATACAAAATGATACTTCGCTATCTGTCCTTCTCCTCC
CCTTGCATTCTAGGGAAGGGACGGATTGGTTAGTATTATCCTTCAACCCT
TCTGCACAAAGCAGAGAAACCCAATACACTCTTCTCGACAACTGCATCAC
TTGTCTGGCTGCTGCCTTGAACCTAACATCCCACCATCATCAAGACAAGA
AGCAAAACCCTGCGCCCCTCGCCCAATTTTTACAAGCAGTTCGGACGCCC
TTGGGCGCTTTAAGGACGTTCAGTAAATTACTGCTGCGTCGAATGGAGCG
GGACCGGGAAGGACTCAGTTACGAGCTGGCCAAAAATGTCTTGATTCAAA
GTGACCAGCTTGTGGAGCTGTTGCTGGATGATACATCGGAAAGGATGGAA
TCAGGAGGAGGAGGAGGAACAGGGTGGGAGATGATGAATGCCCAGGATGG
GAGTAGAAGCGAGGAGGAGATGGAGGAGATGGAGGAGGCGGAGGCGCGGG
GAGGGTTGATGAGGAGGGAGGGCTTGGGCAGAAGCCGCTCGTCAACTTTG
TGCGAATTGCGGGGTGTTTTGGCCCCTGTTGTGAGTGCAGCACAATTAGT
GAGCAGTCGGGATGGGATTAGCTTTTTCTTTTTCCAGGAGGAGGATTTGC
CAAAGCACGTGCCTTTGCTGGACGAGACTCTGCTTCAAGAAACGCTGGGT
ACCCTGGTGGAGTCTGCCTTGGGGTACGCTTTGGAGGGAGCTGTTGCAGG
GGGTCAAAAGCCTGTGGTGACGCTGGATGTGCGGCGCTTAGGTGGTGGTG
GTGCTGAAGAAGGGCCATCAACGACTTTGGTGTTCCTTGTGCAAGACAAC
GGGGTGGCGGCGAGCACTACTCACAGCTCTCCCGAGTTCGGCACTATTCG
AAAGGACGTGGAGCGGATGGGCGCTCGCTTGGAAATTCGGGCTTCCAAGG
CATTGGGAGGCACACAAGCGAGCTTGTACATTGATTGTAGTGCGAGGAAA
GCATATCAATAG
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Coding sequence (CDS) from alignment at scaffold_11:600662..601873-

>mRNA_5800 ID=mRNA_5800|Name=jgi.p|Nanoce1779_2|566134|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at scaffold_11:600662..601873- (Nannochloropsis oceanica)
ATGACGGTTTTCATTAGTGCCCACACAAAGCTAATGCAATCGATATGCCC
AAGGCTTCTTAGCTGTCGCATGTATTCCGTCGCATGGGAAAGCCAAATGG
CATCGCTCGATGACACGGCGTTGCTGCTGCGGGAGGAAGAATTTGGTGCT
CTCTTAGCCAGAAGTAAAGACCCGGACGATCCAAGTGTTGGCATCGCCAC
CTCTTGCGAATCAATACAAAATGATACTTCGCTATCTGTCCTTCTCCTCC
CCTTGCATTCTAGGGAAGGGACGGATTGGTTAGTATTATCCTTCAACCCT
TCTGCACAAAGCAGAGAAACCCAATACACTCTTCTCGACAACTGCATCAC
TTGTCTGGCTGCTGCCTTGAACCTAACATCCCACCATCATCAAGACAAGA
AGCAAAACCCTGCGCCCCTCGCCCAATTTTTACAAGCAGTTCGGACGCCC
TTGGGCGCTTTAAGGACGTTCAGTAAATTACTGCTGCGTCGAATGGAGCG
GGACCGGGAAGGACTCAGTTACGAGCTGGCCAAAAATGTCTTGATTCAAA
GTGACCAGCTTGTGGAGCTGTTGCTGGATGATACATCGGAAAGGATGGAA
TCAGGAGGAGGAGGAGGAACAGGGTGGGAGATGATGAATGCCCAGGATGG
GAGTAGAAGCGAGGAGGAGATGGAGGAGATGGAGGAGGCGGAGGCGCGGG
GAGGGTTGATGAGGAGGGAGGGCTTGGGCAGAAGCCGCTCGTCAACTTTG
TGCGAATTGCGGGGTGTTTTGGCCCCTGTTGTGAGTGCAGCACAATTAGT
GAGCAGTCGGGATGGGATTAGCTTTTTCTTTTTCCAGGAGGAGGATTTGC
CAAAGCACGTGCCTTTGCTGGACGAGACTCTGCTTCAAGAAACGCTGGGT
ACCCTGGTGGAGTCTGCCTTGGGGTACGCTTTGGAGGGAGCTGTTGCAGG
GGGTCAAAAGCCTGTGGTGACGCTGGATGTGCGGCGCTTAGGTGGTGGTG
GTGCTGAAGAAGGGCCATCAACGACTTTGGTGTTCCTTGTGCAAGACAAC
GGGGTGGCGGCGAGCACTACTCACAGCTCTCCCGAGTTCGGCACTATTCG
AAAGGACGTGGAGCGGATGGGCGCTCGCTTGGAAATTCGGGCTTCCAAGG
CATTGGGAGGCACACAAGCGAGCTTGTACATTGATTGTAGTGCGAGGAAA
GCATATCAATAG
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Synonyms
Publications