jgi.p|Nanoce1779_2|576061, mRNA_58 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576061
Unique Name	mRNA_58
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1286
Alignment location	scaffold_3:161526..163821 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576147
Track	FilteredModels2
ProteinId	576061

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:161526..163821 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576061	gene_58	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576061	mRNA_58-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_58	CDS_58	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:161526..163821+
coding sequence from alignment at scaffold_3:161526..163821+

mRNA sequence

>mRNA_58 ID=mRNA_58|Name=jgi.p|Nanoce1779_2|576061|organism=Nannochloropsis oceanica|type=mRNA|length=1286bp
CAGTCCGCCCCACCACAGGGGAGCAGCACTCATCATGTCTGCGTCGTCTT
TCGCCGCCCGGCATCTCGCTCGGCGCACTCTCCAGACCCACATCGCCGCC
ACTTCACTTGCTCCTGTACGTCCAGTCCTTCGTAGAAGGCCTCGGCCCTT
TAGCACAACTGTGCACACACCACCGCCTGCTCCGCATGGAGGCTCGATAG
CCGATGCAACGGTGGAGGCCGCTAAGGAGGGTCCGTGGGCTTGGAGGCTC
AAGGTCGCGGGATTTATCCTAGGGCCCCTGAGCCTGCCTACGGCTTTTGT
GGCCGCCATGGTGTACGACAAGGACTTCCGCGATGACGTAGATGTCCGAT
TTCCGGACGTTGTTGACTTCATTCGCAATCATGTCGGCTTCGAGGAAAAC
ATCGCCCGCCGTCGGACAGACCTGGAGAAGGCGTTTATAAGCGAGCAACC
CCTGGGCGTGACAGTCCAGCTCCAAAGCGGACAGCGCCTCTCCCTGCAAG
TCAGCCCATTGCAAACGTTATCAGGGCTTTATGAATCACTTCCTTCGGTG
GAGGCGGACGAGGCCATCGTTTCGCTTGAATTTGGAAATATTTCCGAGGA
GAAGATCGACGACTCTACCTGGATAACGCAGGAACTTCCCCCCTCGGGCT
CACTGGGCATGGTCCCTCCTTCCATCCGGAGCATGACATTGCCGTCTCTG
TGGGATAAAGTGCAGGACCATGAGGGGGGGATGGGGGAAGGGATGGTGAG
GGAATCGATTCGGATGAAGCGGCAGAGGGGAAGTAGGGGCGAGGTGAGAG
ATGAGAGGGAAAAGGGTGAAGGGGTGGAGCCAGTTGTTGTTCCTCGGACA
TGGTCTCATGGGCTGGCCGGAAAAGGCCCTCCGCTTGCCTTTGTGTTGTA
CTGCGCAATTCTGGACCACTTTCCGCCCACTAGACATTTTCCCATTACCT
CTCCCCCCTCCCTCCCTCCTTCCCTCCTCCTTCCCTCCCTCCTCCTCTTC
CCTAGGAACAAGCCATGATCGACGAACTCGATGCCTCCCTCCGCGACGTC
AACGAAGAGATTGCCCAACTGAAACGTAGCTTGCGTGAAGGATCTGCCCG
CGCCATTGATGACATTGAGGCGGATATTGCTTACCTACAGGCACGGAGTA
AAGACATCCGACGTCAGCTTCGGGGATTGGGGAAGTGGTGGCGGTATTGG
TGGTAGTTATGACCGGAAGGAAGGACAGGGAGGCATGCCTCTTGCGTTCA
GAGCACGGCGTGTGAGAAAGAAGAAACAAACGTGGC

protein sequence of jgi.p|Nanoce1779_2|576061

>mRNA_58-protein ID=mRNA_58-protein|Name=jgi.p|Nanoce1779_2|576061|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MSASSFAARHLARRTLQTHIAATSLAPVRPVLRRRPRPFSTTVHTPPPAP
HGGSIADATVEAAKEGPWAWRLKVAGFILGPLSLPTAFVAAMVYDKDFRD
DVDVRFPDVVDFIRNHVGFEENIARRRTDLEKAFISEQPLGVTVQLQSGQ
RLSLQVSPLQTLSGLYESLPSVEADEAIVSLEFGNISEEKIDDSTWITQE
LPPSGSLGMVPPSIRSMTLPSLWDKVQDHEGGMGEGMVRESIRMKRQRGS
RGEVRDEREKGEGVEPVVVPRTWSHGLAGKGPPLAFVLYCAILDHFPPTR
HFPITSPPSLPPSLLLPSLLLFPRNKP*

mRNA from alignment at scaffold_3:161526..163821+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_58 ID=mRNA_58|Name=jgi.p|Nanoce1779_2|576061|organism=Nannochloropsis oceanica|type=mRNA|length=2296bp|location=Sequence derived from alignment at scaffold_3:161526..163821+ (Nannochloropsis oceanica)
CAGTCCGCCCCACCACAGGGGAGCAGCACTCATCATGTCTGCGTCGTCTT
TCGCCGCCCGGCATCTCGCTCGGCGCACTCTCCAGACCCACATCGCCGCC
ACTTCACTTGCTCCTGTACGTCCAGTCCTTCGTAGAAGGCCTCGGCCCTT
TAGCACAACTGTGCACACACCACCGCCTGCTCCGCATGGAGGCTCGATAG
CCGATGCAACGGTGGAGGCCGCTAAGGAGGGTCCGTGGGCTTGGAGGGTA
CGTATAATCCACTGGCTGTATGGCATTGCCTCAAAATCTCGCTGGTGAAG
GCCCCCCTCCCCCCCCCCCGTCATAATGCCAGGCATCTCAAGGCATAGAG
CTTCCCTGTGGCTTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCTTCCTTC
TTCCCTTTGCCATCGCAGCGTTCGTAAGCCTTCTCCCAGCTTAATCTTAT
TGCAAGCTAACTGAAAGTATCCTCTTCAAGGCTACTTCCAAATTTTCGTG
CTCATCTCCTTGATTCATTTCTTCCTCCCCTTACACGACAAGTAGCTCAA
GGTCGCGGGATTTATCCTAGGGCCCCTGAGCCTGCCTACGGCTTTTGTGG
CCGCCATGGTGTACGACAAGGACTTCCGCGATGACGTAGATGTCCGATTT
CCGGACGTTGGTAAGTCTCTCACGGCTTTCTCTTCTCTACTAGTTTAGTC
TTGTCTTCAGGACGATCGTTGAGAAGTCTCCCACCACTCTCTCTTCTTCC
CTCGTTCAGTCTTGGTCCTGACATCGTCGTTGAAGGAGGGGCGTTGCTTG
AACCCCCTTGGAAGGATCCGACTTTGCTTTCCGTAGCCGCTTACCCTACC
TCTATGCGATTCCACTTATTTAGTCAGTTAGTTAGATAGTTAATTGAGTC
CTACTTTGTTGTTGTGGTCATCTATTCAAGGACGACTGTTCCACCTACGG
TGAACCGACAAACATCGTGTACCCTCCACCTCCCCCTCGCCCCCTCACTC
CTCACAACCCTCCCTTTAGTTGACTTCATTCGCAATCATGTCGGCTTCGA
GGAAAACATCGCCCGCCGTCGGACAGACCTGGAGAAGGCGTTTATAAGCG
AGCAACGTGAGGAAGAAGCAAAGCAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAATTAGTGGTGGTTTGAAGAGATTTCTTTTAT
GAAAATGTTCCTGCTGAAACGATCTCGTCTGGGTGTCATATCTTACCCGT
CCCTCCCTCCTTCCCTCCCTCCCTCCAGCCCTGGGCGTGACAGTCCAGCT
CCAAAGCGGACAGCGCCTCTCCCTGCAAGTCAGCCCATTGCAAACGTTAT
CAGGGCTTTATGAATCACTTCCTTCGGTGGAGGCGGACGAGGCCATCGTT
TCGCTTGAATTTGGAAATATTTCCGAGGAGAAGATCGACGGTGAGGGAGG
GAGTGAGGGAGGGAGCGAGGGAGGGAGGGGTGGTCACGTAATTTATTTCA
TTTTAGCCCCCTCGCTCTATCATTCTTATATCTTTGTTCAATTATCATGT
GCCGTCTCAATCTCTATGGCACTCGATCCCTCCTTTCTCTCCCTACCTCC
CTCCCTCCCTCCCTCCCTTAGACTCTACCTGGATAACGCAGGAACTTCCC
CCCTCGGGCTCACTGGGCATGGTCCCTCCTTCCATCCGGAGCATGACATT
GCCGTCTCTGTGGGATAAAGTGCAGGACCATGAGGGGGGGATGGGGGAAG
GGATGGTGAGGGAATCGATTCGGATGAAGCGGCAGAGGGGAAGTAGGGGC
GAGGTGAGAGATGAGAGGGAAAAGGGTGAAGGGGTGGAGCCAGTTGTTGT
TCCTCGGACATGGTCTCATGGGCTGGCCGGAAAAGGCCCTCCGCTTGCCT
TTGTGTTGTACTGCGCAATTCTGGACCACTTTCCGCCCACTAGACATTTT
CCCATTACCTCTCCCCCCTCCCTCCCTCCTTCCCTCCTCCTTCCCTCCCT
CCTCCTCTTCCCTAGGAACAAGCCATGATCGACGAACTCGATGCCTCCCT
CCGCGACGTCAACGAAGAGATTGCCCAACTGAAACGTAGCTTGCGTGAAG
GATCTGCCCGCGCCATTGATGACATTGAGGCGGATATTGCTTACCTACAG
GCACGGAGTAAAGACATCCGACGTCAGCTTCGGGGATTGGGGAAGTGGTG
GCGGTATTGGTGGTAGTTATGACCGGAAGGAAGGACAGGGAGGCATGCCT
CTTGCGTTCAGAGCACGGCGTGTGAGAAAGAAGAAACAAACGTGGC

Coding sequence (CDS) from alignment at scaffold_3:161526..163821+

>mRNA_58 ID=mRNA_58|Name=jgi.p|Nanoce1779_2|576061|organism=Nannochloropsis oceanica|type=CDS|length=4920bp|location=Sequence derived from alignment at scaffold_3:161526..163821+ (Nannochloropsis oceanica)
ATGTCTGCGTCGTCTTTCGCCGCCCGGCATCTCGCTCGGCGCACTCTCCA
GACCCACATCGCCGCCACTTCACTTGCTCCTGTACGTCCAGTCCTTCGTA
GAAGGCCTCGGCCCTTTAGCACAACTGTGCACACACCACCGCCTGCTCCG
CATGGAGGCTCGATAGCCGATGCAACGGTGGAGGCCGCTAAGGAGGGTCC
GTGGGCTTGGAGGCTCAAGGTCGCGGGATTTATCCTAGGGCCCCTGAGCC
TGCCTACGGCTTTTGTGGCCGCCATGGTGTACGACAAGGACTTCCGCGAT
GACGTAGATGTCCGATTTCCGGACGTTGTTGACTTCATTCGCAATCATGT
CGGCTTCGAGGAAAACATCGCCCGCCGTCGGACAGACCTGGAGAAGGCGT
TTATAAGCGAGCAACCCCTGGGCGTGACAGTCCAGCTCCAAAGCGGACAG
CGCCTCTCCCTGCAAGTCAGCCCATTGCAAACGTTATCAGGGCTTTATGA
ATCACTTCCTTCGGTGGAGGCGGACGAGGCCATCGTTTCGCTTGAATTTG
GAAATATTTCCGAGGAGAAGATCGACGACTCTACCTGGATAACGCAGGAA
CTTCCCCCCTCGGGCTCACTGGGCATGGTCCCTCCTTCCATCCGGAGCAT
GACATTGCCGTCTCTGTGGGATAAAGTGCAGGACCATGAGGGGGGGATGG
GGGAAGGGATGGTGAGGGAATCGATTCGGATGAAGCGGCAGAGGGGAAGT
AGGGGCGAGGTGAGAGATGAGAGGGAAAAGGGTGAAGGGGTGGAGCCAGT
TGTTGTTCCTCGGACATGGTCTCATGGGCTGGCCGGAAAAGGCCCTCCGC
TTGCCTTTGTGTTGTACTGCGCAATTCTGGACCACTTTCCGCCCACTAGA
CATTTTCCCATTACCTCTCCCCCCTCCCTCCCTCCTTCCCTCCTCCTTCC
CTCCCTCCTCCTCTTCCCTAGGAACAAGCCATGAATGTCTGCGTCGTCTT
TCGCCGCCCGGCATCTCGCTCGGCGCACTCTCCAGACCCACATCGCCGCC
ACTTCACTTGCTCCTGTACGTCCAGTCCTTCGTAGAAGGCCTCGGCCCTT
TAGCACAACTGTGCACACACCACCGCCTGCTCCGCATGGAGGCTCGATAG
CCGATGCAACGGTGGAGGCCGCTAAGGAGGGTCCGTGGGCTTGGAGGCTC
AAGGTCGCGGGATTTATCCTAGGGCCCCTGAGCCTGCCTACGGCTTTTGT
GGCCGCCATGGTGTACGACAAGGACTTCCGCGATGACGTAGATGTCCGAT
TTCCGGACGTTGTTGACTTCATTCGCAATCATGTCGGCTTCGAGGAAAAC
ATCGCCCGCCGTCGGACAGACCTGGAGAAGGCGTTTATAAGCGAGCAACC
CCTGGGCGTGACAGTCCAGCTCCAAAGCGGACAGCGCCTCTCCCTGCAAG
TCAGCCCATTGCAAACGTTATCAGGGCTTTATGAATCACTTCCTTCGGTG
GAGGCGGACGAGGCCATCGTTTCGCTTGAATTTGGAAATATTTCCGAGGA
GAAGATCGACGACTCTACCTGGATAACGCAGGAACTTCCCCCCTCGGGCT
CACTGGGCATGGTCCCTCCTTCCATCCGGAGCATGACATTGCCGTCTCTG
TGGGATAAAGTGCAGGACCATGAGGGGGGGATGGGGGAAGGGATGGTGAG
GGAATCGATTCGGATGAAGCGGCAGAGGGGAAGTAGGGGCGAGGTGAGAG
ATGAGAGGGAAAAGGGTGAAGGGGTGGAGCCAGTTGTTGTTCCTCGGACA
TGGTCTCATGGGCTGGCCGGAAAAGGCCCTCCGCTTGCCTTTGTGTTGTA
CTGCGCAATTCTGGACCACTTTCCGCCCACTAGACATTTTCCCATTACCT
CTCCCCCCTCCCTCCCTCCTTCCCTCCTCCTTCCCTCCCTCCTCCTCTTC
CCTAGGAACAAGCCATGAATGTCTGCGTCGTCTTTCGCCGCCCGGCATCT
CGCTCGGCGCACTCTCCAGACCCACATCGCCGCCACTTCACTTGCTCCTG
TACGTCCAGTCCTTCGTAGAAGGCCTCGGCCCTTTAGCACAACTGTGCAC
ACACCACCGCCTGCTCCGCATGGAGGCTCGATAGCCGATGCAACGGTGGA
GGCCGCTAAGGAGGGTCCGTGGGCTTGGAGGCTCAAGGTCGCGGGATTTA
TCCTAGGGCCCCTGAGCCTGCCTACGGCTTTTGTGGCCGCCATGGTGTAC
GACAAGGACTTCCGCGATGACGTAGATGTCCGATTTCCGGACGTTGTTGA
CTTCATTCGCAATCATGTCGGCTTCGAGGAAAACATCGCCCGCCGTCGGA
CAGACCTGGAGAAGGCGTTTATAAGCGAGCAACCCCTGGGCGTGACAGTC
CAGCTCCAAAGCGGACAGCGCCTCTCCCTGCAAGTCAGCCCATTGCAAAC
GTTATCAGGGCTTTATGAATCACTTCCTTCGGTGGAGGCGGACGAGGCCA
TCGTTTCGCTTGAATTTGGAAATATTTCCGAGGAGAAGATCGACGACTCT
ACCTGGATAACGCAGGAACTTCCCCCCTCGGGCTCACTGGGCATGGTCCC
TCCTTCCATCCGGAGCATGACATTGCCGTCTCTGTGGGATAAAGTGCAGG
ACCATGAGGGGGGGATGGGGGAAGGGATGGTGAGGGAATCGATTCGGATG
AAGCGGCAGAGGGGAAGTAGGGGCGAGGTGAGAGATGAGAGGGAAAAGGG
TGAAGGGGTGGAGCCAGTTGTTGTTCCTCGGACATGGTCTCATGGGCTGG
CCGGAAAAGGCCCTCCGCTTGCCTTTGTGTTGTACTGCGCAATTCTGGAC
CACTTTCCGCCCACTAGACATTTTCCCATTACCTCTCCCCCCTCCCTCCC
TCCTTCCCTCCTCCTTCCCTCCCTCCTCCTCTTCCCTAGGAACAAGCCAT
GAATGTCTGCGTCGTCTTTCGCCGCCCGGCATCTCGCTCGGCGCACTCTC
CAGACCCACATCGCCGCCACTTCACTTGCTCCTGTACGTCCAGTCCTTCG
TAGAAGGCCTCGGCCCTTTAGCACAACTGTGCACACACCACCGCCTGCTC
CGCATGGAGGCTCGATAGCCGATGCAACGGTGGAGGCCGCTAAGGAGGGT
CCGTGGGCTTGGAGGCTCAAGGTCGCGGGATTTATCCTAGGGCCCCTGAG
CCTGCCTACGGCTTTTGTGGCCGCCATGGTGTACGACAAGGACTTCCGCG
ATGACGTAGATGTCCGATTTCCGGACGTTGTTGACTTCATTCGCAATCAT
GTCGGCTTCGAGGAAAACATCGCCCGCCGTCGGACAGACCTGGAGAAGGC
GTTTATAAGCGAGCAACCCCTGGGCGTGACAGTCCAGCTCCAAAGCGGAC
AGCGCCTCTCCCTGCAAGTCAGCCCATTGCAAACGTTATCAGGGCTTTAT
GAATCACTTCCTTCGGTGGAGGCGGACGAGGCCATCGTTTCGCTTGAATT
TGGAAATATTTCCGAGGAGAAGATCGACGACTCTACCTGGATAACGCAGG
AACTTCCCCCCTCGGGCTCACTGGGCATGGTCCCTCCTTCCATCCGGAGC
ATGACATTGCCGTCTCTGTGGGATAAAGTGCAGGACCATGAGGGGGGGAT
GGGGGAAGGGATGGTGAGGGAATCGATTCGGATGAAGCGGCAGAGGGGAA
GTAGGGGCGAGGTGAGAGATGAGAGGGAAAAGGGTGAAGGGGTGGAGCCA
GTTGTTGTTCCTCGGACATGGTCTCATGGGCTGGCCGGAAAAGGCCCTCC
GCTTGCCTTTGTGTTGTACTGCGCAATTCTGGACCACTTTCCGCCCACTA
GACATTTTCCCATTACCTCTCCCCCCTCCCTCCCTCCTTCCCTCCTCCTT
CCCTCCCTCCTCCTCTTCCCTAGGAACAAGCCATGAATGTCTGCGTCGTC
TTTCGCCGCCCGGCATCTCGCTCGGCGCACTCTCCAGACCCACATCGCCG
CCACTTCACTTGCTCCTGTACGTCCAGTCCTTCGTAGAAGGCCTCGGCCC
TTTAGCACAACTGTGCACACACCACCGCCTGCTCCGCATGGAGGCTCGAT
AGCCGATGCAACGGTGGAGGCCGCTAAGGAGGGTCCGTGGGCTTGGAGGC
TCAAGGTCGCGGGATTTATCCTAGGGCCCCTGAGCCTGCCTACGGCTTTT
GTGGCCGCCATGGTGTACGACAAGGACTTCCGCGATGACGTAGATGTCCG
ATTTCCGGACGTTGTTGACTTCATTCGCAATCATGTCGGCTTCGAGGAAA
ACATCGCCCGCCGTCGGACAGACCTGGAGAAGGCGTTTATAAGCGAGCAA
CCCCTGGGCGTGACAGTCCAGCTCCAAAGCGGACAGCGCCTCTCCCTGCA
AGTCAGCCCATTGCAAACGTTATCAGGGCTTTATGAATCACTTCCTTCGG
TGGAGGCGGACGAGGCCATCGTTTCGCTTGAATTTGGAAATATTTCCGAG
GAGAAGATCGACGACTCTACCTGGATAACGCAGGAACTTCCCCCCTCGGG
CTCACTGGGCATGGTCCCTCCTTCCATCCGGAGCATGACATTGCCGTCTC
TGTGGGATAAAGTGCAGGACCATGAGGGGGGGATGGGGGAAGGGATGGTG
AGGGAATCGATTCGGATGAAGCGGCAGAGGGGAAGTAGGGGCGAGGTGAG
AGATGAGAGGGAAAAGGGTGAAGGGGTGGAGCCAGTTGTTGTTCCTCGGA
CATGGTCTCATGGGCTGGCCGGAAAAGGCCCTCCGCTTGCCTTTGTGTTG
TACTGCGCAATTCTGGACCACTTTCCGCCCACTAGACATTTTCCCATTAC
CTCTCCCCCCTCCCTCCCTCCTTCCCTCCTCCTTCCCTCCCTCCTCCTCT
TCCCTAGGAACAAGCCATGA

Synonyms

Publications