jgi.p|Nanoce1779_2|590347, mRNA_5799 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590347
Unique NamemRNA_5799
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1495
Alignment locationscaffold_11:598845..600448 -

Link to JBrowse

Properties
Property NameValue
TranscriptId590433
TrackFilteredModels2
ProteinId590347
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:598845..600448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590347gene_5799Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590347mRNA_5799-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5799CDS_5799Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5799 ID=mRNA_5799|Name=jgi.p|Nanoce1779_2|590347|organism=Nannochloropsis oceanica|type=mRNA|length=1495bp
AGGCCCCGCCCCGGTCGCCAAGAAGGCAAGCTTCGGCATCGGCGATCAGC
ACGCTTCTTTCTGCACACGACGACCATGGCACCCCCCGACCCAAACACCA
CCACCACTGTACAAGCCAACTCACACAAATGTAGCAGCAGCAACAACAAC
AAGAACAATAAATACAACAGCAGCAAGCGCCGTCGCCTCCTGCAAGAAGC
TGTGGCGGAAGCAGCCTCATCTGCCACGTGTGGACAAGCTGAAAGCAACG
AGATGGACCCCGCCTCTATAACCTTTCCCTTGGGCTTGGAAGTAGGCTTC
GAGTCCGCTGACTTGCGGATCATGGAAGCACCTCCCGAGGTCGTGGCCGC
TTTGACACAAAGACAGACCTTGCGGGTGGTGGGCGAGTCGCGGGATCAAC
CGGCAGCACTAGTGACGGAGAACGCGACCTTCGAATTGTGTCGGGTCGAG
ACATCCAACATGCTTCTCCTCGTCCCGCCCGTGGAGACCGGGGCAAATAT
AGCGACAGCCACGGGGAATGCCTCGTTTCATTATGAACTTAAACGAAGCA
AGCCAAAACAGCAATTGTTGAGGCAGCTTCTTGGGAAGGGAACGGTGTGG
TCGTTGGACGAGCTGGAGACGCGGGTACAGGGCAGCCGGGTTGAGGTGTT
GGCGTTGCTGCGTCAGATGAATGCCTTGGAGGTGGATGGTGACGTCCAGA
AATGGCGGGGTGTGAGCGAGGAGGAGGAAGTGTCTCCGACCTTGGATCGT
CTGTTGGCGGAGCTAATAAGCGCGGGCAAGAGCTTGGAGGGAGTTGATGA
GGAGGACTGCTTGCGGATGCTGCCTGACGTCGAACCTGTTCTGATCCATC
ATTGCCTCAAAGCCTATGGGAGCCCTAACAACGGCCACGTTTCACAAACC
CCAGCAAAATCAGCTACCGCAGCAGCAGCAGTAGCCGTGAGCTCAACCGC
ACCCGAACAGCCGCAGCAGCAGCAGCAGCAGCTGTCACCACCGCAGCAGA
AGCGTACGTGGACGTTGGACCTAAGCAAGGTCGCTCGTTTCAAGGCCCAC
CAGATTTTCCAGCAAGGGATGAGTCGTCCCCAGAGAGGGATCTGGGAGCG
TGATAATTTCTTCTTAGAATGGGAGACGAGGCTGCCAGGTTCTTATCGGC
CTGAAGCTGAATTGTTGAGGGGGTTGGCGGTAGAGGAGAAGGTGGGGGGG
GAGGAGTGCCTCCGGTACCTTCCGGGTGAGACAATGCCTTTGGATCCGAC
AGAGAGGTTAAAGAAATTGTTTGCCGTTAGAAAGAAGTGGCAGTTGGAAG
AGATGATGCCCTACATGCTGCCTCTGGTGCCGGGGAAGAAAGACTTGGAA
GACTTTTTGTTGAAGCACACACGGTCGGCCGTGGCAGTGGACGGGGTGGG
TGGGAGAACGTACTCTGCAAAGTGACAAGGGAAGGGAGAAACGGAGGAGG
CAAAAGAGAGAAATAGTGCAAAATGAATCAGACATCTTGATTTAA
back to top

protein sequence of jgi.p|Nanoce1779_2|590347

>mRNA_5799-protein ID=mRNA_5799-protein|Name=jgi.p|Nanoce1779_2|590347|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MAPPDPNTTTTVQANSHKCSSSNNNKNNKYNSSKRRRLLQEAVAEAASSA
TCGQAESNEMDPASITFPLGLEVGFESADLRIMEAPPEVVAALTQRQTLR
VVGESRDQPAALVTENATFELCRVETSNMLLLVPPVETGANIATATGNAS
FHYELKRSKPKQQLLRQLLGKGTVWSLDELETRVQGSRVEVLALLRQMNA
LEVDGDVQKWRGVSEEEEVSPTLDRLLAELISAGKSLEGVDEEDCLRMLP
DVEPVLIHHCLKAYGSPNNGHVSQTPAKSATAAAAVAVSSTAPEQPQQQQ
QQLSPPQQKRTWTLDLSKVARFKAHQIFQQGMSRPQRGIWERDNFFLEWE
TRLPGSYRPEAELLRGLAVEEKVGGEECLRYLPGETMPLDPTERLKKLFA
VRKKWQLEEMMPYMLPLVPGKKDLEDFLLKHTRSAVAVDGVGGRTYSAK*
back to top

mRNA from alignment at scaffold_11:598845..600448-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5799 ID=mRNA_5799|Name=jgi.p|Nanoce1779_2|590347|organism=Nannochloropsis oceanica|type=mRNA|length=1604bp|location=Sequence derived from alignment at scaffold_11:598845..600448- (Nannochloropsis oceanica)
AGGCCCCGCCCCGGTCGCCAAGAAGGCAAGCTTCGGCATCGGCGATCAGC
ACGCTTCTTTCTGCACACGACGACCATGGCACCCCCCGACCCAAACACCA
CCACCACTGTACAAGCCAACTCACACAAATGTAGCAGCAGCAACAACAAC
AAGAACAATAAATACAACAGCAGCAAGCGCCGTCGCCTCCTGCAAGAAGC
TGTGGCGGAAGCAGCCTCATCTGCCACGTGTGGACAAGCTGAAAGCAACG
AGATGGACCCCGCCTCTATAACCTTTCCCTTGGGCTTGGAAGTAGGCTTC
GAGTCCGCTGACTTGCGGATCATGGAAGCACCTCCCGAGGTCGTGGCCGC
TTTGACACAAAGACAGACCTTGCGGGTGGTGGGCGAGTCGCGGGATCAAC
CGGCAGCACTAGTGACGGAGAACGCGACCTTCGAATTGTGTCGGGTCGAG
ACATCCAACATGCTTCTCCTCGTCCCGCCCGTGGAGACCGGGGCAAATAT
AGCGACAGCCACGGGGAATGCCTCGTTTCATTATGAACTTAAACGAAGCA
AGCCAAAACAGCAATTGTTGAGGCAGCTTCTTGGGAAGGGAACGGTGTGG
TCGTTGGACGAGCTGGAGACGCGGGTACAGGGCAGCCGGGTTGAGGTGTT
GGCGTTGCTGCGTCAGATGAATGCCTTGGAGGTGGATGGTGACGTCCAGA
AATGGCGGGGTGTGAGCGAGGAGGAGGAAGTGTCTCCGACCTTGGATCGT
CTGTTGGCGGAGCTAATAAGCGCGGGCAAGAGCTTGGAGGGAGTTGATGA
GGAGGACTGCTTGCGGATGCTGGTAGGTTTTGTTTTGTGGTTGTTATACC
CCTCTCCTGTACTTCCCTTCATTTTTTGAAATCACCTCTCATTCCACCAT
CACTCTGTCTTTCCTTTCATCTTCACTACAGCCTGACGTCGAACCTGTTC
TGATCCATCATTGCCTCAAAGCCTATGGGAGCCCTAACAACGGCCACGTT
TCACAAACCCCAGCAAAATCAGCTACCGCAGCAGCAGCAGTAGCCGTGAG
CTCAACCGCACCCGAACAGCCGCAGCAGCAGCAGCAGCAGCTGTCACCAC
CGCAGCAGAAGCGTACGTGGACGTTGGACCTAAGCAAGGTCGCTCGTTTC
AAGGCCCACCAGATTTTCCAGCAAGGGATGAGTCGTCCCCAGAGAGGGAT
CTGGGAGCGTGATAATTTCTTCTTAGAATGGGAGACGAGGCTGCCAGGTT
CTTATCGGCCTGAAGCTGAATTGTTGAGGGGGTTGGCGGTAGAGGAGAAG
GTGGGGGGGGAGGAGTGCCTCCGGTACCTTCCGGGTGAGACAATGCCTTT
GGATCCGACAGAGAGGTTAAAGAAATTGTTTGCCGTTAGAAAGAAGTGGC
AGTTGGAAGAGATGATGCCCTACATGCTGCCTCTGGTGCCGGGGAAGAAA
GACTTGGAAGACTTTTTGTTGAAGCACACACGGTCGGCCGTGGCAGTGGA
CGGGGTGGGTGGGAGAACGTACTCTGCAAAGTGACAAGGGAAGGGAGAAA
CGGAGGAGGCAAAAGAGAGAAATAGTGCAAAATGAATCAGACATCTTGAT
TTAA
back to top

Coding sequence (CDS) from alignment at scaffold_11:598845..600448-

>mRNA_5799 ID=mRNA_5799|Name=jgi.p|Nanoce1779_2|590347|organism=Nannochloropsis oceanica|type=CDS|length=2700bp|location=Sequence derived from alignment at scaffold_11:598845..600448- (Nannochloropsis oceanica)
CCTGACGTCGAACCTGTTCTGATCCATCATTGCCTCAAAGCCTATGGGAG
CCCTAACAACGGCCACGTTTCACAAACCCCAGCAAAATCAGCTACCGCAG
CAGCAGCAGTAGCCGTGAGCTCAACCGCACCCGAACAGCCGCAGCAGCAG
CAGCAGCAGCTGTCACCACCGCAGCAGAAGCGTACGTGGACGTTGGACCT
AAGCAAGGTCGCTCGTTTCAAGGCCCACCAGATTTTCCAGCAAGGGATGA
GTCGTCCCCAGAGAGGGATCTGGGAGCGTGATAATTTCTTCTTAGAATGG
GAGACGAGGCTGCCAGGTTCTTATCGGCCTGAAGCTGAATTGTTGAGGGG
GTTGGCGGTAGAGGAGAAGGTGGGGGGGGAGGAGTGCCTCCGGTACCTTC
CGGGTGAGACAATGCCTTTGGATCCGACAGAGAGGTTAAAGAAATTGTTT
GCCGTTAGAAAGAAGTGGCAGTTGGAAGAGATGATGCCCTACATGCTGCC
TCTGGTGCCGGGGAAGAAAGACTTGGAAGACTTTTTGTTGAAGCACACAC
GGTCGGCCGTGGCAGTGGACGGGGTGGGTGGGAGAACGTACTCTGCAAAG
TGAATGGCACCCCCCGACCCAAACACCACCACCACTGTACAAGCCAACTC
ACACAAATGTAGCAGCAGCAACAACAACAAGAACAATAAATACAACAGCA
GCAAGCGCCGTCGCCTCCTGCAAGAAGCTGTGGCGGAAGCAGCCTCATCT
GCCACGTGTGGACAAGCTGAAAGCAACGAGATGGACCCCGCCTCTATAAC
CTTTCCCTTGGGCTTGGAAGTAGGCTTCGAGTCCGCTGACTTGCGGATCA
TGGAAGCACCTCCCGAGGTCGTGGCCGCTTTGACACAAAGACAGACCTTG
CGGGTGGTGGGCGAGTCGCGGGATCAACCGGCAGCACTAGTGACGGAGAA
CGCGACCTTCGAATTGTGTCGGGTCGAGACATCCAACATGCTTCTCCTCG
TCCCGCCCGTGGAGACCGGGGCAAATATAGCGACAGCCACGGGGAATGCC
TCGTTTCATTATGAACTTAAACGAAGCAAGCCAAAACAGCAATTGTTGAG
GCAGCTTCTTGGGAAGGGAACGGTGTGGTCGTTGGACGAGCTGGAGACGC
GGGTACAGGGCAGCCGGGTTGAGGTGTTGGCGTTGCTGCGTCAGATGAAT
GCCTTGGAGGTGGATGGTGACGTCCAGAAATGGCGGGGTGTGAGCGAGGA
GGAGGAAGTGTCTCCGACCTTGGATCGTCTGTTGGCGGAGCTAATAAGCG
CGGGCAAGAGCTTGGAGGGAGTTGATGAGGAGGACTGCTTGCGGATGCTG
CCTGACGTCGAACCTGTTCTGATCCATCATTGCCTCAAAGCCTATGGGAG
CCCTAACAACGGCCACGTTTCACAAACCCCAGCAAAATCAGCTACCGCAG
CAGCAGCAGTAGCCGTGAGCTCAACCGCACCCGAACAGCCGCAGCAGCAG
CAGCAGCAGCTGTCACCACCGCAGCAGAAGCGTACGTGGACGTTGGACCT
AAGCAAGGTCGCTCGTTTCAAGGCCCACCAGATTTTCCAGCAAGGGATGA
GTCGTCCCCAGAGAGGGATCTGGGAGCGTGATAATTTCTTCTTAGAATGG
GAGACGAGGCTGCCAGGTTCTTATCGGCCTGAAGCTGAATTGTTGAGGGG
GTTGGCGGTAGAGGAGAAGGTGGGGGGGGAGGAGTGCCTCCGGTACCTTC
CGGGTGAGACAATGCCTTTGGATCCGACAGAGAGGTTAAAGAAATTGTTT
GCCGTTAGAAAGAAGTGGCAGTTGGAAGAGATGATGCCCTACATGCTGCC
TCTGGTGCCGGGGAAGAAAGACTTGGAAGACTTTTTGTTGAAGCACACAC
GGTCGGCCGTGGCAGTGGACGGGGTGGGTGGGAGAACGTACTCTGCAAAG
TGAATGGCACCCCCCGACCCAAACACCACCACCACTGTACAAGCCAACTC
ACACAAATGTAGCAGCAGCAACAACAACAAGAACAATAAATACAACAGCA
GCAAGCGCCGTCGCCTCCTGCAAGAAGCTGTGGCGGAAGCAGCCTCATCT
GCCACGTGTGGACAAGCTGAAAGCAACGAGATGGACCCCGCCTCTATAAC
CTTTCCCTTGGGCTTGGAAGTAGGCTTCGAGTCCGCTGACTTGCGGATCA
TGGAAGCACCTCCCGAGGTCGTGGCCGCTTTGACACAAAGACAGACCTTG
CGGGTGGTGGGCGAGTCGCGGGATCAACCGGCAGCACTAGTGACGGAGAA
CGCGACCTTCGAATTGTGTCGGGTCGAGACATCCAACATGCTTCTCCTCG
TCCCGCCCGTGGAGACCGGGGCAAATATAGCGACAGCCACGGGGAATGCC
TCGTTTCATTATGAACTTAAACGAAGCAAGCCAAAACAGCAATTGTTGAG
GCAGCTTCTTGGGAAGGGAACGGTGTGGTCGTTGGACGAGCTGGAGACGC
GGGTACAGGGCAGCCGGGTTGAGGTGTTGGCGTTGCTGCGTCAGATGAAT
GCCTTGGAGGTGGATGGTGACGTCCAGAAATGGCGGGGTGTGAGCGAGGA
GGAGGAAGTGTCTCCGACCTTGGATCGTCTGTTGGCGGAGCTAATAAGCG
CGGGCAAGAGCTTGGAGGGAGTTGATGAGGAGGACTGCTTGCGGATGCTG
back to top
Synonyms
Publications