Properties
| Property Name | Value |
|---|
| TranscriptId | 590426 |
| Track | FilteredModels2 |
| ProteinId | 590340 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:592652..594255 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5797 ID=mRNA_5797|Name=jgi.p|Nanoce1779_2|590340|organism=Nannochloropsis oceanica|type=mRNA|length=1604bp
ATTTTCTTCTTAATATTCTTCAGCATAATCTTTCCATTCCCAGCGTAGCC
AACACCGATCACCCCCTCATCCTCCGTGCCCTCCACCATCTCCTGGGCAC
CTATCAACCCCTCCCCCTCCTCCCCCTCCCTCCCTATCCTTTATCTGTCT
GCATTCACAACACCAACAACAATTTTAACTCTGGCCCCGTTCGCTCCTCC
TCACCTTCCTCCCTCCCGTCACTCCTCCACGGTCCCGCGCTCCTCCTCAT
TCCTTGTCTCTCTCGCCCCGACACCGACAAGCAAGCTATGGCCTTCCGCT
CCATCTGCATCGGCCCCCTCCCTCCTTCCCTCCCCCATCCTCGCTCCAGG
CCACTGATTTAATCCTGACTGGGATCAGACATGCGGAGGAGGGGAAGTGT
GAGATGGCTGCGAAACTCCTACTCATTGAATCCATCGTTAGAACTATCCT
ATCCGTAGAACAAGGTGAGCACACCAAATACCTTCTAGAACAATTCGCAA
GAAATATTCGGGAGAGACACATCAAGGATCCTTTGCCCGCCTTGGAGAGG
GATGGAGGGAGGGAGGAAGAGGGTGGGGGAGGGGTTGCGAATGTTTGGGC
AGGTGGTGAGATTTTTGGATAGAAAGACAGAAGAGGAGACATCTTTTATC
GCGGAGGACCTGGTGAGAGAGGCATGGCCATCGCTGGGTCATGCTGCTGA
AGTGGGAAGAAGGGCGCAGAGAGAAGGAGGAGGGGTGGGAGGGAGGGAGG
GGGGAAGGGCGATTTTTGACGAGTTGTTCCCGCTGTATCGTTATTTAGTG
GTTGGGTTACGGAGAGTGTTTGAGCCGCTGTTGGGTGAGTTGTTGAGGGG
AAATGTGGATTTGTTTTTTGAAAGACTGGACGAGGGGGCCTTGGAGACGG
TTGGACATGTCGTTGAAATGTTTCCAGGAATGGACAGAAGGAGGGAGGGA
GGAAAGAGTGGGGTTGGTGGCAGCAAAGGTAGCAGCGATGATTGTGTGTT
TCCGGACTTGTTTATGACCATGGCGAATAGAACATTTAATTATACTCGGG
CCGGACACCCACCGCAGGAGATCCCGGAATTGGTGAGAGCGTTTTTTGAT
ATGAGTCTGCGGCTTCTCCCTTTTCGGAGGCATGTGTTTTTGATGTCCCC
TGCCCTACCAACGGTGATTGACTTGGCGTCGGCCTGTTTGGAGGTTACGA
TGGAGGAGAAAGAGGTGACAAGGGGTGTGTCGAGGCTGCTTAAGGATCTA
TTCAAGATAATGCAGGAACATCCAGGTGAAGGCTACGTCCTCCCCACCTA
CCTTCCATGAAAGTCAGGGTACTTGCCTCGTGATACGTACACTTGGTACC
TTGGCTGGCGGAGTCCTATCTACGTTATGGTCAAATTATTTTGAGCTGTT
CTTCGCCTTGTTGCAGGCATGGCCGGTAGCTGCTGCTGCTGCAGCTGGAG
GGAGCGGGGATCAGCAGCAGCAGCAGCAGCAGCAGGGAGAGTCAGTAGTA
GCGGGGTGGGTTGAAGCGGCTGTGTTTGATTATCAGGTGCTGCGAGAAGA
AAGTGTTTCGAGAGAAGATCGGCAATTGTTGGTGCAGTTGATTGGCATGT
GGGG back to topprotein sequence of jgi.p|Nanoce1779_2|590340 >mRNA_5797-protein ID=mRNA_5797-protein|Name=jgi.p|Nanoce1779_2|590340|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MEGGRKRVGEGLRMFGQVVRFLDRKTEEETSFIAEDLVREAWPSLGHAAE
VGRRAQREGGGVGGREGGRAIFDELFPLYRYLVVGLRRVFEPLLGELLRG
NVDLFFERLDEGALETVGHVVEMFPGMDRRREGGKSGVGGSKGSSDDCVF
PDLFMTMANRTFNYTRAGHPPQEIPELVRAFFDMSLRLLPFRRHVFLMSP
ALPTVIDLASACLEVTMEEKEVTRGVSRLLKDLFKIMQEHPGEGYVLPTY
LP* back to topmRNA from alignment at scaffold_11:592652..594255+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5797 ID=mRNA_5797|Name=jgi.p|Nanoce1779_2|590340|organism=Nannochloropsis oceanica|type=mRNA|length=1604bp|location=Sequence derived from alignment at scaffold_11:592652..594255+ (Nannochloropsis oceanica)
ATTTTCTTCTTAATATTCTTCAGCATAATCTTTCCATTCCCAGCGTAGCC
AACACCGATCACCCCCTCATCCTCCGTGCCCTCCACCATCTCCTGGGCAC
CTATCAACCCCTCCCCCTCCTCCCCCTCCCTCCCTATCCTTTATCTGTCT
GCATTCACAACACCAACAACAATTTTAACTCTGGCCCCGTTCGCTCCTCC
TCACCTTCCTCCCTCCCGTCACTCCTCCACGGTCCCGCGCTCCTCCTCAT
TCCTTGTCTCTCTCGCCCCGACACCGACAAGCAAGCTATGGCCTTCCGCT
CCATCTGCATCGGCCCCCTCCCTCCTTCCCTCCCCCATCCTCGCTCCAGG
CCACTGATTTAATCCTGACTGGGATCAGACATGCGGAGGAGGGGAAGTGT
GAGATGGCTGCGAAACTCCTACTCATTGAATCCATCGTTAGAACTATCCT
ATCCGTAGAACAAGGTGAGCACACCAAATACCTTCTAGAACAATTCGCAA
GAAATATTCGGGAGAGACACATCAAGGATCCTTTGCCCGCCTTGGAGAGG
GATGGAGGGAGGGAGGAAGAGGGTGGGGGAGGGGTTGCGAATGTTTGGGC
AGGTGGTGAGATTTTTGGATAGAAAGACAGAAGAGGAGACATCTTTTATC
GCGGAGGACCTGGTGAGAGAGGCATGGCCATCGCTGGGTCATGCTGCTGA
AGTGGGAAGAAGGGCGCAGAGAGAAGGAGGAGGGGTGGGAGGGAGGGAGG
GGGGAAGGGCGATTTTTGACGAGTTGTTCCCGCTGTATCGTTATTTAGTG
GTTGGGTTACGGAGAGTGTTTGAGCCGCTGTTGGGTGAGTTGTTGAGGGG
AAATGTGGATTTGTTTTTTGAAAGACTGGACGAGGGGGCCTTGGAGACGG
TTGGACATGTCGTTGAAATGTTTCCAGGAATGGACAGAAGGAGGGAGGGA
GGAAAGAGTGGGGTTGGTGGCAGCAAAGGTAGCAGCGATGATTGTGTGTT
TCCGGACTTGTTTATGACCATGGCGAATAGAACATTTAATTATACTCGGG
CCGGACACCCACCGCAGGAGATCCCGGAATTGGTGAGAGCGTTTTTTGAT
ATGAGTCTGCGGCTTCTCCCTTTTCGGAGGCATGTGTTTTTGATGTCCCC
TGCCCTACCAACGGTGATTGACTTGGCGTCGGCCTGTTTGGAGGTTACGA
TGGAGGAGAAAGAGGTGACAAGGGGTGTGTCGAGGCTGCTTAAGGATCTA
TTCAAGATAATGCAGGAACATCCAGGTGAAGGCTACGTCCTCCCCACCTA
CCTTCCATGAAAGTCAGGGTACTTGCCTCGTGATACGTACACTTGGTACC
TTGGCTGGCGGAGTCCTATCTACGTTATGGTCAAATTATTTTGAGCTGTT
CTTCGCCTTGTTGCAGGCATGGCCGGTAGCTGCTGCTGCTGCAGCTGGAG
GGAGCGGGGATCAGCAGCAGCAGCAGCAGCAGCAGGGAGAGTCAGTAGTA
GCGGGGTGGGTTGAAGCGGCTGTGTTTGATTATCAGGTGCTGCGAGAAGA
AAGTGTTTCGAGAGAAGATCGGCAATTGTTGGTGCAGTTGATTGGCATGT
GGGG back to topCoding sequence (CDS) from alignment at scaffold_11:592652..594255+ >mRNA_5797 ID=mRNA_5797|Name=jgi.p|Nanoce1779_2|590340|organism=Nannochloropsis oceanica|type=CDS|length=759bp|location=Sequence derived from alignment at scaffold_11:592652..594255+ (Nannochloropsis oceanica)
ATGGAGGGAGGGAGGAAGAGGGTGGGGGAGGGGTTGCGAATGTTTGGGCA
GGTGGTGAGATTTTTGGATAGAAAGACAGAAGAGGAGACATCTTTTATCG
CGGAGGACCTGGTGAGAGAGGCATGGCCATCGCTGGGTCATGCTGCTGAA
GTGGGAAGAAGGGCGCAGAGAGAAGGAGGAGGGGTGGGAGGGAGGGAGGG
GGGAAGGGCGATTTTTGACGAGTTGTTCCCGCTGTATCGTTATTTAGTGG
TTGGGTTACGGAGAGTGTTTGAGCCGCTGTTGGGTGAGTTGTTGAGGGGA
AATGTGGATTTGTTTTTTGAAAGACTGGACGAGGGGGCCTTGGAGACGGT
TGGACATGTCGTTGAAATGTTTCCAGGAATGGACAGAAGGAGGGAGGGAG
GAAAGAGTGGGGTTGGTGGCAGCAAAGGTAGCAGCGATGATTGTGTGTTT
CCGGACTTGTTTATGACCATGGCGAATAGAACATTTAATTATACTCGGGC
CGGACACCCACCGCAGGAGATCCCGGAATTGGTGAGAGCGTTTTTTGATA
TGAGTCTGCGGCTTCTCCCTTTTCGGAGGCATGTGTTTTTGATGTCCCCT
GCCCTACCAACGGTGATTGACTTGGCGTCGGCCTGTTTGGAGGTTACGAT
GGAGGAGAAAGAGGTGACAAGGGGTGTGTCGAGGCTGCTTAAGGATCTAT
TCAAGATAATGCAGGAACATCCAGGTGAAGGCTACGTCCTCCCCACCTAC
CTTCCATGA back to top
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