jgi.p|Nanoce1779_2|590338, mRNA_5795 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590338
Unique NamemRNA_5795
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length868
Alignment locationscaffold_11:591116..591983 +

Link to JBrowse

Properties
Property NameValue
TranscriptId590424
TrackFilteredModels2
ProteinId590338
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:591116..591983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590338gene_5795Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590338mRNA_5795-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5795CDS_5795Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5795 ID=mRNA_5795|Name=jgi.p|Nanoce1779_2|590338|organism=Nannochloropsis oceanica|type=mRNA|length=868bp
GCTTCTCACGCGTCTATTACATCTGAACCTTCGTGGCCAAGACATGATAC
CGCCTGCCGCCGCCCACCAATACCGCCCTGTATTGCCGTGAAACCCTAAT
CTACGATGTGCAAAATGTCATCATCACCCTCTACGGAACTCACGATCCGG
CCCTGCGAGAGCAGGCGAACCGTGCACTCATCTCATACCAAGAAACTCAG
CAGGCATGGGGCGTGGTCATGGCCTTGCTTCTCCCCCCTGCGTCGACCTC
CGCCCCTCCTCTCGAGGTCCAATACTTCGCGGCAAATGTTCTACGCACCA
AGGCCACGCGTGACTGGGCGGAGATCTCGCAGGAGCCAGGGCAGAGTACT
GCTCTTATGGAAAATTTGCTGAGGTTCCTCCAGCACCAGCAACCAAAGCT
ACACCGGGAACACGAGCACCGCCTTGTCCTCTTCCGGGTTTGCCACACGC
TCACCACACTCGCCGTCAAGAGCACCCCTAGAAGCTCTTTCAGCGGGATC
ACTCTCCTCGTGAACGAAGCGTTTAACTTCCTAGGTGGCAACGCCGATGT
AATCCCTTCCTCTCCCGCAACTTCCCTCACGATCGGCCTCTGTCTCATTC
GAGCATTACCTGAAGAAGTGGGCCGTGTGGATATGTCTCGTGGTCGACGA
AAGGAGCTACAGCAAGAGACATTGCGGCAGGTAAGGCCACAAGTTGTAAG
AGTGGTGGAGTTACTTGTGTTGCAGCGAATGAGTGACGTAGGGCAATTGG
CATTGGAGACGCTTGAGGCATGGGTGGAGCAGGGTGGAGCGAGGGAGGGA
GGGAGAGAGGGAGGGAAGGAGGGTTGACGCTCACGACACTGGTACAGGAG
GCCCCAGGGTTGTTCGGG
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protein sequence of jgi.p|Nanoce1779_2|590338

>mRNA_5795-protein ID=mRNA_5795-protein|Name=jgi.p|Nanoce1779_2|590338|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MALLLPPASTSAPPLEVQYFAANVLRTKATRDWAEISQEPGQSTALMENL
LRFLQHQQPKLHREHEHRLVLFRVCHTLTTLAVKSTPRSSFSGITLLVNE
AFNFLGGNADVIPSSPATSLTIGLCLIRALPEEVGRVDMSRGRRKELQQE
TLRQVRPQVVRVVELLVLQRMSDVGQLALETLEAWVEQGGAREGGREGGK
EG*
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mRNA from alignment at scaffold_11:591116..591983+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5795 ID=mRNA_5795|Name=jgi.p|Nanoce1779_2|590338|organism=Nannochloropsis oceanica|type=mRNA|length=868bp|location=Sequence derived from alignment at scaffold_11:591116..591983+ (Nannochloropsis oceanica)
GCTTCTCACGCGTCTATTACATCTGAACCTTCGTGGCCAAGACATGATAC
CGCCTGCCGCCGCCCACCAATACCGCCCTGTATTGCCGTGAAACCCTAAT
CTACGATGTGCAAAATGTCATCATCACCCTCTACGGAACTCACGATCCGG
CCCTGCGAGAGCAGGCGAACCGTGCACTCATCTCATACCAAGAAACTCAG
CAGGCATGGGGCGTGGTCATGGCCTTGCTTCTCCCCCCTGCGTCGACCTC
CGCCCCTCCTCTCGAGGTCCAATACTTCGCGGCAAATGTTCTACGCACCA
AGGCCACGCGTGACTGGGCGGAGATCTCGCAGGAGCCAGGGCAGAGTACT
GCTCTTATGGAAAATTTGCTGAGGTTCCTCCAGCACCAGCAACCAAAGCT
ACACCGGGAACACGAGCACCGCCTTGTCCTCTTCCGGGTTTGCCACACGC
TCACCACACTCGCCGTCAAGAGCACCCCTAGAAGCTCTTTCAGCGGGATC
ACTCTCCTCGTGAACGAAGCGTTTAACTTCCTAGGTGGCAACGCCGATGT
AATCCCTTCCTCTCCCGCAACTTCCCTCACGATCGGCCTCTGTCTCATTC
GAGCATTACCTGAAGAAGTGGGCCGTGTGGATATGTCTCGTGGTCGACGA
AAGGAGCTACAGCAAGAGACATTGCGGCAGGTAAGGCCACAAGTTGTAAG
AGTGGTGGAGTTACTTGTGTTGCAGCGAATGAGTGACGTAGGGCAATTGG
CATTGGAGACGCTTGAGGCATGGGTGGAGCAGGGTGGAGCGAGGGAGGGA
GGGAGAGAGGGAGGGAAGGAGGGTTGACGCTCACGACACTGGTACAGGAG
GCCCCAGGGTTGTTCGGG
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Coding sequence (CDS) from alignment at scaffold_11:591116..591983+

>mRNA_5795 ID=mRNA_5795|Name=jgi.p|Nanoce1779_2|590338|organism=Nannochloropsis oceanica|type=CDS|length=609bp|location=Sequence derived from alignment at scaffold_11:591116..591983+ (Nannochloropsis oceanica)
ATGGCCTTGCTTCTCCCCCCTGCGTCGACCTCCGCCCCTCCTCTCGAGGT
CCAATACTTCGCGGCAAATGTTCTACGCACCAAGGCCACGCGTGACTGGG
CGGAGATCTCGCAGGAGCCAGGGCAGAGTACTGCTCTTATGGAAAATTTG
CTGAGGTTCCTCCAGCACCAGCAACCAAAGCTACACCGGGAACACGAGCA
CCGCCTTGTCCTCTTCCGGGTTTGCCACACGCTCACCACACTCGCCGTCA
AGAGCACCCCTAGAAGCTCTTTCAGCGGGATCACTCTCCTCGTGAACGAA
GCGTTTAACTTCCTAGGTGGCAACGCCGATGTAATCCCTTCCTCTCCCGC
AACTTCCCTCACGATCGGCCTCTGTCTCATTCGAGCATTACCTGAAGAAG
TGGGCCGTGTGGATATGTCTCGTGGTCGACGAAAGGAGCTACAGCAAGAG
ACATTGCGGCAGGTAAGGCCACAAGTTGTAAGAGTGGTGGAGTTACTTGT
GTTGCAGCGAATGAGTGACGTAGGGCAATTGGCATTGGAGACGCTTGAGG
CATGGGTGGAGCAGGGTGGAGCGAGGGAGGGAGGGAGAGAGGGAGGGAAG
GAGGGTTGA
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Synonyms
Publications