jgi.p|Nanoce1779_2|590334, mRNA_5793 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590334
Unique NamemRNA_5793
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1550
Alignment locationscaffold_11:585769..587318 +

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Properties
Property NameValue
TranscriptId590420
TrackFilteredModels2
ProteinId590334
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:585769..587318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590334gene_5793Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590334mRNA_5793-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5793CDS_5793Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5793 ID=mRNA_5793|Name=jgi.p|Nanoce1779_2|590334|organism=Nannochloropsis oceanica|type=mRNA|length=1550bp
GGGGGGAGGGGTTCATCGGCTTTGAAAACATGTAATGTGTGTCCAGTACA
TTTTTGTAATGTTGCCGATGAGAGGGAGGGGCCAACGAGTCGGAGGGGCC
AACGAGTCAGAGGGGCCAACGAGTCAGATTTGAGATAGATGACATTGAAA
AGAGAGCAAATTATCCCCGGGCCCAACGCAAAATTGTTTTTCATCCTATA
AGAAGTGCTGCACACCACCATCAACATTATTGTAAGTGAGCTAAGGAATG
AGGTACAAAGCGACATCGGAAAGAGAAGGGAGTAAGAGGTTAGTGAGAGG
GATTTGAATATTGTAGAATACATGCCATGGCTTGGCTTGTTCTTATCTTG
CATGCACTATATATATATATGCTCGGGGCGCATGTCTCTCGCCCCTTTTC
TCATTGCTTGTTGTAAGAGGTAATAAACGTTGAAGCTTATGTGGGTAAAA
TATGAAGACGGAGGAAAGAGGAGGAGCAGAGGCAGAGACAGAGACCGAGA
CAGGAAGGAGAGTGATTGAGAGAGATGGGGATGACGAGAGACACAGACAG
AGATGAGAGTAAAAGAGACAGAGAGAATAAAATTGACGGTGTTACTTTTT
ATCGTGGGGAAAGGTGAAGAAAGTAGAGAAACAAGTTTTGAGTCTCGAGA
GTGTGCTATTTGAACTCATCCCCATATCGGTAGGCGCCATGACCAGGACA
AACGTTCACTGACCGGTGGAAAATGGAAGAGTACTCATACACACAGCTTA
AGTGCGTAAGCAACAATGATATGTGATGCCACTAGTTGTATCCTTGGTGG
CCTGTTTGGAGCCTTCGTGCAAGAAAGAAAAACCAAAAAACCACACAGGA
CGACCAAGAACGAAAAGAGAGAAAGAACTCACACCATCAGGCACCGATAC
TGGCATAAGCACTGTCTCTCATGTCGTCGCAGCGTCCTGATTTTTTCGTC
TTTGCCCCTCTTCTGTTCTTCCTATCCTACGCATTCGGTTTCGTTTTTGG
ATGTAATCCTTCTCTTTTCATGTGTCCGAAGGCTATGGGGAAACATTTTT
TGCTTCGGCCCCCTTTCTTTTCATGTCCCTTGCTTGATTTGGGTTTTTTC
GTGCATTCCTCTATTTCTGGTACTCGTGTTCTACATTTTAAAAATATCTA
TGTGAGGGAATGGGGGACACTCCACTTGTATCTGATGGTACAGGCATATC
CTTGCGCACACATTTTTAACATGCGAAATCTCTCTCTTGCACACACACAC
AACACACATACACACACACACACACACACACAACACACACACACACATAT
ATATATATATATTTAGACACATGAGACACAGACACATAGACACAGACACA
CAAACTGACACAAACTGACACAAACAAACATGCAAGTACCAGAGTCACCA
TCCCCTCCTTCCTCCTGAAGCCCTTGTTTTGCTCCCCGCCTTCCTCCCTC
GCTGCTTCCAAACTACAATCTCTATACGATCATCGCCTCCTCTTCCTCAC
CCCCCATCACCAACCCACTCCTGTCATTACTCCCTCCCCCTCCTCCTCCA
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protein sequence of jgi.p|Nanoce1779_2|590334

>mRNA_5793-protein ID=mRNA_5793-protein|Name=jgi.p|Nanoce1779_2|590334|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MSSQRPDFFVFAPLLFFLSYAFGFVFGCNPSLFMCPKAMGKHFLLRPPFF
SCPLLDLGFFVHSSISGTRVLHFKNIYVREWGTLHLYLMVQAYPCAHIFN
MRNLSLAHTHNTHTHTHTHTQHTHTHIYIYI*
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mRNA from alignment at scaffold_11:585769..587318+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5793 ID=mRNA_5793|Name=jgi.p|Nanoce1779_2|590334|organism=Nannochloropsis oceanica|type=mRNA|length=1550bp|location=Sequence derived from alignment at scaffold_11:585769..587318+ (Nannochloropsis oceanica)
GGGGGGAGGGGTTCATCGGCTTTGAAAACATGTAATGTGTGTCCAGTACA
TTTTTGTAATGTTGCCGATGAGAGGGAGGGGCCAACGAGTCGGAGGGGCC
AACGAGTCAGAGGGGCCAACGAGTCAGATTTGAGATAGATGACATTGAAA
AGAGAGCAAATTATCCCCGGGCCCAACGCAAAATTGTTTTTCATCCTATA
AGAAGTGCTGCACACCACCATCAACATTATTGTAAGTGAGCTAAGGAATG
AGGTACAAAGCGACATCGGAAAGAGAAGGGAGTAAGAGGTTAGTGAGAGG
GATTTGAATATTGTAGAATACATGCCATGGCTTGGCTTGTTCTTATCTTG
CATGCACTATATATATATATGCTCGGGGCGCATGTCTCTCGCCCCTTTTC
TCATTGCTTGTTGTAAGAGGTAATAAACGTTGAAGCTTATGTGGGTAAAA
TATGAAGACGGAGGAAAGAGGAGGAGCAGAGGCAGAGACAGAGACCGAGA
CAGGAAGGAGAGTGATTGAGAGAGATGGGGATGACGAGAGACACAGACAG
AGATGAGAGTAAAAGAGACAGAGAGAATAAAATTGACGGTGTTACTTTTT
ATCGTGGGGAAAGGTGAAGAAAGTAGAGAAACAAGTTTTGAGTCTCGAGA
GTGTGCTATTTGAACTCATCCCCATATCGGTAGGCGCCATGACCAGGACA
AACGTTCACTGACCGGTGGAAAATGGAAGAGTACTCATACACACAGCTTA
AGTGCGTAAGCAACAATGATATGTGATGCCACTAGTTGTATCCTTGGTGG
CCTGTTTGGAGCCTTCGTGCAAGAAAGAAAAACCAAAAAACCACACAGGA
CGACCAAGAACGAAAAGAGAGAAAGAACTCACACCATCAGGCACCGATAC
TGGCATAAGCACTGTCTCTCATGTCGTCGCAGCGTCCTGATTTTTTCGTC
TTTGCCCCTCTTCTGTTCTTCCTATCCTACGCATTCGGTTTCGTTTTTGG
ATGTAATCCTTCTCTTTTCATGTGTCCGAAGGCTATGGGGAAACATTTTT
TGCTTCGGCCCCCTTTCTTTTCATGTCCCTTGCTTGATTTGGGTTTTTTC
GTGCATTCCTCTATTTCTGGTACTCGTGTTCTACATTTTAAAAATATCTA
TGTGAGGGAATGGGGGACACTCCACTTGTATCTGATGGTACAGGCATATC
CTTGCGCACACATTTTTAACATGCGAAATCTCTCTCTTGCACACACACAC
AACACACATACACACACACACACACACACACAACACACACACACACATAT
ATATATATATATTTAGACACATGAGACACAGACACATAGACACAGACACA
CAAACTGACACAAACTGACACAAACAAACATGCAAGTACCAGAGTCACCA
TCCCCTCCTTCCTCCTGAAGCCCTTGTTTTGCTCCCCGCCTTCCTCCCTC
GCTGCTTCCAAACTACAATCTCTATACGATCATCGCCTCCTCTTCCTCAC
CCCCCATCACCAACCCACTCCTGTCATTACTCCCTCCCCCTCCTCCTCCA
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Coding sequence (CDS) from alignment at scaffold_11:585769..587318+

>mRNA_5793 ID=mRNA_5793|Name=jgi.p|Nanoce1779_2|590334|organism=Nannochloropsis oceanica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_11:585769..587318+ (Nannochloropsis oceanica)
ATGTCGTCGCAGCGTCCTGATTTTTTCGTCTTTGCCCCTCTTCTGTTCTT
CCTATCCTACGCATTCGGTTTCGTTTTTGGATGTAATCCTTCTCTTTTCA
TGTGTCCGAAGGCTATGGGGAAACATTTTTTGCTTCGGCCCCCTTTCTTT
TCATGTCCCTTGCTTGATTTGGGTTTTTTCGTGCATTCCTCTATTTCTGG
TACTCGTGTTCTACATTTTAAAAATATCTATGTGAGGGAATGGGGGACAC
TCCACTTGTATCTGATGGTACAGGCATATCCTTGCGCACACATTTTTAAC
ATGCGAAATCTCTCTCTTGCACACACACACAACACACATACACACACACA
CACACACACACAACACACACACACACATATATATATATATATTTAG
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Synonyms
Publications