jgi.p|Nanoce1779_2|590326, mRNA_5792 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590326
Unique NamemRNA_5792
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1482
Alignment locationscaffold_11:580817..582298 -

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Properties
Property NameValue
TranscriptId590412
TrackFilteredModels2
ProteinId590326
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:580817..582298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590326gene_5792Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590326mRNA_5792-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5792CDS_5792Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5792 ID=mRNA_5792|Name=jgi.p|Nanoce1779_2|590326|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp
AGCCAGTACCACACAACAGAATACGGTGCAGCGGCTCCTAACAGCAAGCT
CTGTCCGCCCCTTGTCAGAAATCTCCCCCTGCTCTTTCCAGTACAACGCC
TGAGTCATGTCCTGCTCCTATCCACTTCACCCATTTCTACGCGTGGCCAT
TGTCGCAGCCTTCGTCATCTCATCCACACAAGCCTTTCTCTCGTCCACTA
AGCCAAAGGTGTCTTCTACGTTGCGCACAACTTCGCGACTGGCCTCCACA
TCGTCCACCACCTCGTCCACCACCTCGCCTCCTTCCCCTCCTCCTCAATC
GGAGACTCTCGCCCTCACCGCATTCGCAGACGCGAACCAGCAGCGTAATG
AGCTGAAGGTCGCCTTGTTTCGGAGCCTGGGACAGCAGCCACCAAGCACC
AGTTCATTTGGTGATGACGACGAGGGTCTTGACCGAGTCCTGGTTTGCCC
CTTAACCCTGAAGCCCGTGCGCCGCGTCGTCCGTCTAGCGGGCCCTTTTG
GGCAGATCGCGAACATGGTTAGCTCGTCTGGAACCAAATACCCTGCGAAT
GATATATACATTGATTTGGTCCCACAAGATGAACGGAATCAGATTCCTTT
CTTCTCCCCCACTGCTATGGTCACCCAAGAGCTGTTTCGTTCCCCGCTCA
CGTCCTTCTTGTACGAACGTGGATGGAGGGATAATTTCAAGACTGCGGGG
TTCCCAGGGATTGACACAGAGTTTATCGACCTGGAGAAATTCATGTCTCC
GCTCTTGCTATCTCCTGCGACCGTTGAGGCACCTCGCCAACCGCAGCAGC
AGCAGCAGAAGATAAGGATGACAAGCACGACGATCGTGGACTTGAGCTGT
GGGAGTGGATTGATGGCCCGTCGGTTGGTTCGTTCCAAGAAATGGGACAG
AGTGATTGCCGCGGATTTCAGTGAGAGTATGCTGCGAGAAACACGGCGCC
GATTCGTGGAGGAGAAGTTGGCAGTACCGGAGCTAGTGCGTGTTGATGCA
TCGAGGCTCCCATTTCAGACTGACAGTGTGGATGGGATCCATGCGGGAGC
GGCGTTGCACTGTTGGCCTAGGCTGGAGGAAAGCTTGAGGGAGTGCTTTA
GGGTGTTGAAGCCGGGTGGGAGGATGTACGCGTCGACGTTTGAGGTCAAC
GAGAGGTTGCGGAGCAATACGTTTCGGTTTTTCCAGTTGGAAGAGCTGAG
AAAGTTGTTTGTCATGAGTGGGTTTGGAGAGGTGGAAGTGCGGAGGGAGG
GGACTGCTTGTTTGATTGTCAAGGCTGTAAAGAAGGGGTAGCATAAGATG
TACGGAGAAGGAGCAGCACAAAGAGAAGTGACGAATATAGGTGGGATAAT
GTAAACAGGCACTAACACGCGCGCGTCCGATTCTCCCCTCTAGCCATTAC
TCACCCTAGTGCTTTCTTGCAGGAGAAGATATACAGTGGAGTCTCCAAAT
TGTTTAAAAGAACTAGTGAAGCACATCGGCAC
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protein sequence of jgi.p|Nanoce1779_2|590326

>mRNA_5792-protein ID=mRNA_5792-protein|Name=jgi.p|Nanoce1779_2|590326|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MSCSYPLHPFLRVAIVAAFVISSTQAFLSSTKPKVSSTLRTTSRLASTSS
TTSSTTSPPSPPPQSETLALTAFADANQQRNELKVALFRSLGQQPPSTSS
FGDDDEGLDRVLVCPLTLKPVRRVVRLAGPFGQIANMVSSSGTKYPANDI
YIDLVPQDERNQIPFFSPTAMVTQELFRSPLTSFLYERGWRDNFKTAGFP
GIDTEFIDLEKFMSPLLLSPATVEAPRQPQQQQQKIRMTSTTIVDLSCGS
GLMARRLVRSKKWDRVIAADFSESMLRETRRRFVEEKLAVPELVRVDASR
LPFQTDSVDGIHAGAALHCWPRLEESLRECFRVLKPGGRMYASTFEVNER
LRSNTFRFFQLEELRKLFVMSGFGEVEVRREGTACLIVKAVKKG*
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mRNA from alignment at scaffold_11:580817..582298-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5792 ID=mRNA_5792|Name=jgi.p|Nanoce1779_2|590326|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp|location=Sequence derived from alignment at scaffold_11:580817..582298- (Nannochloropsis oceanica)
AGCCAGTACCACACAACAGAATACGGTGCAGCGGCTCCTAACAGCAAGCT
CTGTCCGCCCCTTGTCAGAAATCTCCCCCTGCTCTTTCCAGTACAACGCC
TGAGTCATGTCCTGCTCCTATCCACTTCACCCATTTCTACGCGTGGCCAT
TGTCGCAGCCTTCGTCATCTCATCCACACAAGCCTTTCTCTCGTCCACTA
AGCCAAAGGTGTCTTCTACGTTGCGCACAACTTCGCGACTGGCCTCCACA
TCGTCCACCACCTCGTCCACCACCTCGCCTCCTTCCCCTCCTCCTCAATC
GGAGACTCTCGCCCTCACCGCATTCGCAGACGCGAACCAGCAGCGTAATG
AGCTGAAGGTCGCCTTGTTTCGGAGCCTGGGACAGCAGCCACCAAGCACC
AGTTCATTTGGTGATGACGACGAGGGTCTTGACCGAGTCCTGGTTTGCCC
CTTAACCCTGAAGCCCGTGCGCCGCGTCGTCCGTCTAGCGGGCCCTTTTG
GGCAGATCGCGAACATGGTTAGCTCGTCTGGAACCAAATACCCTGCGAAT
GATATATACATTGATTTGGTCCCACAAGATGAACGGAATCAGATTCCTTT
CTTCTCCCCCACTGCTATGGTCACCCAAGAGCTGTTTCGTTCCCCGCTCA
CGTCCTTCTTGTACGAACGTGGATGGAGGGATAATTTCAAGACTGCGGGG
TTCCCAGGGATTGACACAGAGTTTATCGACCTGGAGAAATTCATGTCTCC
GCTCTTGCTATCTCCTGCGACCGTTGAGGCACCTCGCCAACCGCAGCAGC
AGCAGCAGAAGATAAGGATGACAAGCACGACGATCGTGGACTTGAGCTGT
GGGAGTGGATTGATGGCCCGTCGGTTGGTTCGTTCCAAGAAATGGGACAG
AGTGATTGCCGCGGATTTCAGTGAGAGTATGCTGCGAGAAACACGGCGCC
GATTCGTGGAGGAGAAGTTGGCAGTACCGGAGCTAGTGCGTGTTGATGCA
TCGAGGCTCCCATTTCAGACTGACAGTGTGGATGGGATCCATGCGGGAGC
GGCGTTGCACTGTTGGCCTAGGCTGGAGGAAAGCTTGAGGGAGTGCTTTA
GGGTGTTGAAGCCGGGTGGGAGGATGTACGCGTCGACGTTTGAGGTCAAC
GAGAGGTTGCGGAGCAATACGTTTCGGTTTTTCCAGTTGGAAGAGCTGAG
AAAGTTGTTTGTCATGAGTGGGTTTGGAGAGGTGGAAGTGCGGAGGGAGG
GGACTGCTTGTTTGATTGTCAAGGCTGTAAAGAAGGGGTAGCATAAGATG
TACGGAGAAGGAGCAGCACAAAGAGAAGTGACGAATATAGGTGGGATAAT
GTAAACAGGCACTAACACGCGCGCGTCCGATTCTCCCCTCTAGCCATTAC
TCACCCTAGTGCTTTCTTGCAGGAGAAGATATACAGTGGAGTCTCCAAAT
TGTTTAAAAGAACTAGTGAAGCACATCGGCAC
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Coding sequence (CDS) from alignment at scaffold_11:580817..582298-

>mRNA_5792 ID=mRNA_5792|Name=jgi.p|Nanoce1779_2|590326|organism=Nannochloropsis oceanica|type=CDS|length=1185bp|location=Sequence derived from alignment at scaffold_11:580817..582298- (Nannochloropsis oceanica)
ATGTCCTGCTCCTATCCACTTCACCCATTTCTACGCGTGGCCATTGTCGC
AGCCTTCGTCATCTCATCCACACAAGCCTTTCTCTCGTCCACTAAGCCAA
AGGTGTCTTCTACGTTGCGCACAACTTCGCGACTGGCCTCCACATCGTCC
ACCACCTCGTCCACCACCTCGCCTCCTTCCCCTCCTCCTCAATCGGAGAC
TCTCGCCCTCACCGCATTCGCAGACGCGAACCAGCAGCGTAATGAGCTGA
AGGTCGCCTTGTTTCGGAGCCTGGGACAGCAGCCACCAAGCACCAGTTCA
TTTGGTGATGACGACGAGGGTCTTGACCGAGTCCTGGTTTGCCCCTTAAC
CCTGAAGCCCGTGCGCCGCGTCGTCCGTCTAGCGGGCCCTTTTGGGCAGA
TCGCGAACATGGTTAGCTCGTCTGGAACCAAATACCCTGCGAATGATATA
TACATTGATTTGGTCCCACAAGATGAACGGAATCAGATTCCTTTCTTCTC
CCCCACTGCTATGGTCACCCAAGAGCTGTTTCGTTCCCCGCTCACGTCCT
TCTTGTACGAACGTGGATGGAGGGATAATTTCAAGACTGCGGGGTTCCCA
GGGATTGACACAGAGTTTATCGACCTGGAGAAATTCATGTCTCCGCTCTT
GCTATCTCCTGCGACCGTTGAGGCACCTCGCCAACCGCAGCAGCAGCAGC
AGAAGATAAGGATGACAAGCACGACGATCGTGGACTTGAGCTGTGGGAGT
GGATTGATGGCCCGTCGGTTGGTTCGTTCCAAGAAATGGGACAGAGTGAT
TGCCGCGGATTTCAGTGAGAGTATGCTGCGAGAAACACGGCGCCGATTCG
TGGAGGAGAAGTTGGCAGTACCGGAGCTAGTGCGTGTTGATGCATCGAGG
CTCCCATTTCAGACTGACAGTGTGGATGGGATCCATGCGGGAGCGGCGTT
GCACTGTTGGCCTAGGCTGGAGGAAAGCTTGAGGGAGTGCTTTAGGGTGT
TGAAGCCGGGTGGGAGGATGTACGCGTCGACGTTTGAGGTCAACGAGAGG
TTGCGGAGCAATACGTTTCGGTTTTTCCAGTTGGAAGAGCTGAGAAAGTT
GTTTGTCATGAGTGGGTTTGGAGAGGTGGAAGTGCGGAGGGAGGGGACTG
CTTGTTTGATTGTCAAGGCTGTAAAGAAGGGGTAG
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Synonyms
Publications