jgi.p|Nanoce1779_2|508632, mRNA_5788 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|508632
Unique NamemRNA_5788
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length513
Alignment locationscaffold_11:574866..575420 -

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Properties
Property NameValue
TranscriptId508718
TrackFilteredModels2
ProteinId508632
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:574866..575420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|508632gene_5788Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|508632mRNA_5788-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5788CDS_5788Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5788 ID=mRNA_5788|Name=jgi.p|Nanoce1779_2|508632|organism=Nannochloropsis oceanica|type=mRNA|length=513bp
ATGGATAAGATCCCTGAAGAGCGCAGTCGTCTCCTCGTCCGCACCCTCGG
TTGTGTCTTGCAAAAACTCGTCGATGTCAACCGAAAACATGACGAGAGCA
GTACTATGGCTCCGGCTCTTACGAAGTTTCATGCTTCCCGCCCTCCTTCA
ATCAGCGTTGCTGAATACCTAGAGCGCATCAATACATACGCCTCTTGCTC
GTCAGAATGCTTGGTCCTTGCCTTGATATACATCGACCGTTTAATCCAAC
AGTCGAATTTCGCGCTCACCGCATTGAATATCCACCGGGTCCTTATCACA
GCCATTATGCTGGCGGCTAAATTTTTCGACGACCAGTACTTCAACAACCT
TTACTACGCGAAAGTCGGGGGAGTCCCTTGCAAGGAGATCAACTCTTTAG
AGGTGGAATTTCTGTTCTTAACCAATTTCTCGTTACATGTAACGGAGGAG
GTTTTCTTCCGGTATTTCCATGAGTTGATGAATCATGCTGCCCATGCTCA
GTGTCCGACGTGT
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protein sequence of jgi.p|Nanoce1779_2|508632

>mRNA_5788-protein ID=mRNA_5788-protein|Name=jgi.p|Nanoce1779_2|508632|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MDKIPEERSRLLVRTLGCVLQKLVDVNRKHDESSTMAPALTKFHASRPPS
ISVAEYLERINTYASCSSECLVLALIYIDRLIQQSNFALTALNIHRVLIT
AIMLAAKFFDDQYFNNLYYAKVGGVPCKEINSLEVEFLFLTNFSLHVTEE
VFFRYFHELMNHAAHAQCPTC
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mRNA from alignment at scaffold_11:574866..575420-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5788 ID=mRNA_5788|Name=jgi.p|Nanoce1779_2|508632|organism=Nannochloropsis oceanica|type=mRNA|length=555bp|location=Sequence derived from alignment at scaffold_11:574866..575420- (Nannochloropsis oceanica)
ATGGATAAGATCCCTGAAGAGCGCAGTCGTCTCCTCGTCCGCACCCTCGG
TTGTGTCTTGCAAAAACTCGTCGATGTCAACCGAAAACATGACGAGAGCA
GTAGTGGATCAGCAGCAGCTGGTGGTGTTCCATTGGCTTCTGCAGCTATG
GCTCCGGCTCTTACGAAGTTTCATGCTTCCCGCCCTCCTTCAATCAGCGT
TGCTGAATACCTAGAGCGCATCAATACATACGCCTCTTGCTCGTCAGAAT
GCTTGGTCCTTGCCTTGATATACATCGACCGTTTAATCCAACAGTCGAAT
TTCGCGCTCACCGCATTGAATATCCACCGGGTCCTTATCACAGCCATTAT
GCTGGCGGCTAAATTTTTCGACGACCAGTACTTCAACAACCTTTACTACG
CGAAAGTCGGGGGAGTCCCTTGCAAGGAGATCAACTCTTTAGAGGTGGAA
TTTCTGTTCTTAACCAATTTCTCGTTACATGTAACGGAGGAGGTTTTCTT
CCGGTATTTCCATGAGTTGATGAATCATGCTGCCCATGCTCAGTGTCCGA
CGTGT
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Coding sequence (CDS) from alignment at scaffold_11:574866..575420-

>mRNA_5788 ID=mRNA_5788|Name=jgi.p|Nanoce1779_2|508632|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_11:574866..575420- (Nannochloropsis oceanica)
CTATGGCTCCGGCTCTTACGAAGTTTCATGCTTCCCGCCCTCCTTCAATC
AGCGTTGCTGAATACCTAGAGCGCATCAATACATACGCCTCTTGCTCGTC
AGAATGCTTGGTCCTTGCCTTGATATACATCGACCGTTTAATCCAACAGT
CGAATTTCGCGCTCACCGCATTGAATATCCACCGGGTCCTTATCACAGCC
ATTATGCTGGCGGCTAAATTTTTCGACGACCAGTACTTCAACAACCTTTA
CTACGCGAAAGTCGGGGGAGTCCCTTGCAAGGAGATCAACTCTTTAGAGG
TGGAATTTCTGTTCTTAACCAATTTCTCGTTACATGTAACGGAGGAGGTT
TTCTTCCGGTATTTCCATGAGTTGATGAATCATGCTGCCCATGCTCAGTG
TCCGACGTGTATGGATAAGATCCCTGAAGAGCGCAGTCGTCTCCTCGTCC
GCACCCTCGGTTGTGTCTTGCAAAAACTCGTCGATGTCAACCGAAAACAT
GACGAGAGCAGTACTATGGCTCCGGCTCTTACGAAGTTTCATGCTTCCCG
CCCTCCTTCAATCAGCGTTGCTGAATACCTAGAGCGCATCAATACATACG
CCTCTTGCTCGTCAGAATGCTTGGTCCTTGCCTTGATATACATCGACCGT
TTAATCCAACAGTCGAATTTCGCGCTCACCGCATTGAATATCCACCGGGT
CCTTATCACAGCCATTATGCTGGCGGCTAAATTTTTCGACGACCAGTACT
TCAACAACCTTTACTACGCGAAAGTCGGGGGAGTCCCTTGCAAGGAGATC
AACTCTTTAGAGGTGGAATTTCTGTTCTTAACCAATTTCTCGTTACATGT
AACGGAGGAGGTTTTCTTCCGGTATTTCCATGAGTTGATGAATCATGCTG
CCCATGCTCAGTGTCCGACGTGTATGGATAAGATCCCTGAAGAGCGCAGT
CGTCTCCTCGTCCGCACCCTCGGTTGTGTCTTGCAAAAACTCGTCGATGT
CAACCGAAAACATGACGAGAGCAGTA
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Synonyms
Publications