jgi.p|Nanoce1779_2|590315, mRNA_5787 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590315
Unique Name	mRNA_5787
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2364
Alignment location	scaffold_11:573811..576174 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590401
Track	FilteredModels2
ProteinId	590315

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:573811..576174 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590315	gene_5787	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590315	mRNA_5787-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5787	CDS_5787	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:573811..576174+
coding sequence from alignment at scaffold_11:573811..576174+

mRNA sequence

>mRNA_5787 ID=mRNA_5787|Name=jgi.p|Nanoce1779_2|590315|organism=Nannochloropsis oceanica|type=mRNA|length=2364bp
ATTCCCCCCATCCCCGCTCCGTTGCTGCTGTACTGCTGTTGCTGGGCAGC
GTGGTAGTGAGGCTGCTGGTAGTCAAACTGCTGGTGGTGCTCGAAATTCA
GTGCCTGCTCCTGCTGCTGCTGAAGCCGAGGCTGCTGCCGAGCCACCGCC
GCTGCTACTGATGCAGAACTGTTGCTCCTGCTGCTGCTGATATTGCTCCT
GCTGCTCATGCTGCAGCTACTGCTCCCTTCTTTCCGAAACGTCACTGTTC
CTCCTCCGGTCGCTTGAGAGGGGGATTGGACTGATGCAGTGGAAAGGGAC
GGTGTGGGGGTCGAGGCAGGGCAGGCGCCAGCGGCATGAGGGAAGTAGGC
CGGCGCGTCTGGGGCGAGGGAAGGAGGAAAGACCTTGCGAACAACGGGCA
CCGGAGCGTAAAGCAACCCATGATGCTGTTGCTGCTGTTGTTGTTGTTGC
TGATGATGATGATGATGGTGAGAGTGAAGGTGGAGGTAGCTGTGAGCAGC
CTGAGGATTTTCGGGGGTCTTAGAAGACGAGGAAGCGACGGAGCAACAGA
AAGTGGAAGCAGGCAAGCCTTCAGACGCCGCTTCTCCTTCGTAGGAGAAG
TAAGAGATAAACCGCGGCTCGTCGTTAAACTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGTTGCTGCTGTTCGACGCCCGTCAGCACATTCCCCCTAGCGA
ACGCCATCCGTCGCTGCAGCTGCAGTACCTGCTGCTGCTGCTGGTGAAAT
AATTCCTGACGCAGCTGTTGTTCGTGCTCGCGCTGGTGGTGCTGCTGCTG
TTGAGAGAGAGCGTGGGGCTGCTGATGCTGGAGCTTGCTATGGTACGAAA
GCGGGGGGGTCACAACCATGCCAGGGGAGATGGACCTTCCTCCCAACATC
CCACGTCCTCCCTTCCCCTGCTCCTGCTGCTGCTGCTGCTGATAAACCGG
GCTTGACATATGCCCTAACCCCACCACACCACTTCCTGTTCCTGATCCTT
CAGCTGTTGTTGTTGCTGCTGCTGCCGCTGTAGCTGTAGCACTCCCCCGC
GGACAACACGTCGGACACTGAGCATGGGCAGCATGATTCATCAACTCATG
GAAATACCGGAAGAAAACCTCCTCCGTTACATGTAACGAGAAATTGGTTA
AGAACAGAAATTCCACCTCTAAAGAGTTGATCTCCTTGCAAGGGACTCCC
CCGACTTTCGCGTAGTAAAGGTTGTTGAAGTACTGGTCGTCGAAAAATTT
AGCCGCCAGCATAATGGCTGTGATAAGGACCCGGTGGATATTCAATGCGG
TGAGCGCGAAATTCGACTGTTGGATTAAACGGTCGATGTATATCAAGGCA
AGGACCAAGCATTCTGACGAGCAAGAGGCGTATGTATTGATGCGCTCTAG
GTATTCAGCAACGCTGATTGAAGGAGGGCGGGAAGCATGAAACTTCGTAA
GAGCCGGAGCCATAGCTGCAGAAGCCAATGGAACACCACCAGCTGCTGCT
GATCCACTACTGCTCTCGTCATGTTTTCGGTTGACATCGACGAGTTTTTG
CAAGACACAACCGAGGGTGCGGACGAGGAGACGACTGCGCTCTTCAGGGA
TCTTATCCATTGTCGCGTAAGCGGAGGAGGAGGAGGACAGAGAGGAAGGA
GAGGATGGTGAGGGGGAGGAGGTGAGGCAAGATGAGGGGGCGTAGGTGGC
GGAGGAGTAGAGGGTGGAGGAGTAGGAAATGGGGAGGGCGGAGAAGGCAG
AGGCGAAGGAGGAGTTGGAGGAGGACGAGGACGTGCAGGAGGCGGAGGAG
GAGGAGGAGAGGGAGGTGGCGGTAGAGAAGGAGGATGTAATGGCTGAAAT
GGTGGGAGGGTGGTGGTGGTCTGTGCCTGTGCCTGGGTAAACTGCCTCTC
GGGAGGAGAGGTGTTGCTCCCGGAGGTGGATTTGTAGTTCTTGTTGTTCT
CCTACTTGACGACGAGAATGGATTGAAGAAGCAGCAACGGGTTGCCTCCT
CTCATCCCCCCCTGAAAGGGTGGGGTTGATACGAAACGAGGTCCCGTTTA
GAGCTCCGAAGCCATCTTCCCGGTGGGGAGACACGCCAGGCACCACAATC
GGCCTCGGAAAGTGAAGGAGAGAAGGAGAAGTGTCCGAGGACCAGCACCA
CTACCGTGATCCAGACGGCAGCGATAGCAACGACCCTGCGGAGTGCGCGA
CCCTACAGATGAGGGCGCAGGGGGAAAGAAGAGGCTCTTAGGACACAGGC
CAAAAAGGAAGAAAAAGGCTCGACGCTCTTTCTCCTTTCCTCCTTGTCGT
GGGGGCCTCCCGTTTCACTTTCACCCTAAGGACAACAAGCGGGCTCCTCC
TCCAAAGCCACCTG

protein sequence of jgi.p|Nanoce1779_2|590315

>mRNA_5787-protein ID=mRNA_5787-protein|Name=jgi.p|Nanoce1779_2|590315|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MREVGRRVWGEGRRKDLANNGHRSVKQPMMLLLLLLLLLMMMMMVRVKVE
VAVSSLRIFGGLRRRGSDGATESGSRQAFRRRFSFVGEVRDKPRLVVKLL
LLLLLLLLLLLFDARQHIPPSERHPSLQLQYLLLLLVK*

mRNA from alignment at scaffold_11:573811..576174+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5787 ID=mRNA_5787|Name=jgi.p|Nanoce1779_2|590315|organism=Nannochloropsis oceanica|type=mRNA|length=2364bp|location=Sequence derived from alignment at scaffold_11:573811..576174+ (Nannochloropsis oceanica)
ATTCCCCCCATCCCCGCTCCGTTGCTGCTGTACTGCTGTTGCTGGGCAGC
GTGGTAGTGAGGCTGCTGGTAGTCAAACTGCTGGTGGTGCTCGAAATTCA
GTGCCTGCTCCTGCTGCTGCTGAAGCCGAGGCTGCTGCCGAGCCACCGCC
GCTGCTACTGATGCAGAACTGTTGCTCCTGCTGCTGCTGATATTGCTCCT
GCTGCTCATGCTGCAGCTACTGCTCCCTTCTTTCCGAAACGTCACTGTTC
CTCCTCCGGTCGCTTGAGAGGGGGATTGGACTGATGCAGTGGAAAGGGAC
GGTGTGGGGGTCGAGGCAGGGCAGGCGCCAGCGGCATGAGGGAAGTAGGC
CGGCGCGTCTGGGGCGAGGGAAGGAGGAAAGACCTTGCGAACAACGGGCA
CCGGAGCGTAAAGCAACCCATGATGCTGTTGCTGCTGTTGTTGTTGTTGC
TGATGATGATGATGATGGTGAGAGTGAAGGTGGAGGTAGCTGTGAGCAGC
CTGAGGATTTTCGGGGGTCTTAGAAGACGAGGAAGCGACGGAGCAACAGA
AAGTGGAAGCAGGCAAGCCTTCAGACGCCGCTTCTCCTTCGTAGGAGAAG
TAAGAGATAAACCGCGGCTCGTCGTTAAACTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGTTGCTGCTGTTCGACGCCCGTCAGCACATTCCCCCTAGCGA
ACGCCATCCGTCGCTGCAGCTGCAGTACCTGCTGCTGCTGCTGGTGAAAT
AATTCCTGACGCAGCTGTTGTTCGTGCTCGCGCTGGTGGTGCTGCTGCTG
TTGAGAGAGAGCGTGGGGCTGCTGATGCTGGAGCTTGCTATGGTACGAAA
GCGGGGGGGTCACAACCATGCCAGGGGAGATGGACCTTCCTCCCAACATC
CCACGTCCTCCCTTCCCCTGCTCCTGCTGCTGCTGCTGCTGATAAACCGG
GCTTGACATATGCCCTAACCCCACCACACCACTTCCTGTTCCTGATCCTT
CAGCTGTTGTTGTTGCTGCTGCTGCCGCTGTAGCTGTAGCACTCCCCCGC
GGACAACACGTCGGACACTGAGCATGGGCAGCATGATTCATCAACTCATG
GAAATACCGGAAGAAAACCTCCTCCGTTACATGTAACGAGAAATTGGTTA
AGAACAGAAATTCCACCTCTAAAGAGTTGATCTCCTTGCAAGGGACTCCC
CCGACTTTCGCGTAGTAAAGGTTGTTGAAGTACTGGTCGTCGAAAAATTT
AGCCGCCAGCATAATGGCTGTGATAAGGACCCGGTGGATATTCAATGCGG
TGAGCGCGAAATTCGACTGTTGGATTAAACGGTCGATGTATATCAAGGCA
AGGACCAAGCATTCTGACGAGCAAGAGGCGTATGTATTGATGCGCTCTAG
GTATTCAGCAACGCTGATTGAAGGAGGGCGGGAAGCATGAAACTTCGTAA
GAGCCGGAGCCATAGCTGCAGAAGCCAATGGAACACCACCAGCTGCTGCT
GATCCACTACTGCTCTCGTCATGTTTTCGGTTGACATCGACGAGTTTTTG
CAAGACACAACCGAGGGTGCGGACGAGGAGACGACTGCGCTCTTCAGGGA
TCTTATCCATTGTCGCGTAAGCGGAGGAGGAGGAGGACAGAGAGGAAGGA
GAGGATGGTGAGGGGGAGGAGGTGAGGCAAGATGAGGGGGCGTAGGTGGC
GGAGGAGTAGAGGGTGGAGGAGTAGGAAATGGGGAGGGCGGAGAAGGCAG
AGGCGAAGGAGGAGTTGGAGGAGGACGAGGACGTGCAGGAGGCGGAGGAG
GAGGAGGAGAGGGAGGTGGCGGTAGAGAAGGAGGATGTAATGGCTGAAAT
GGTGGGAGGGTGGTGGTGGTCTGTGCCTGTGCCTGGGTAAACTGCCTCTC
GGGAGGAGAGGTGTTGCTCCCGGAGGTGGATTTGTAGTTCTTGTTGTTCT
CCTACTTGACGACGAGAATGGATTGAAGAAGCAGCAACGGGTTGCCTCCT
CTCATCCCCCCCTGAAAGGGTGGGGTTGATACGAAACGAGGTCCCGTTTA
GAGCTCCGAAGCCATCTTCCCGGTGGGGAGACACGCCAGGCACCACAATC
GGCCTCGGAAAGTGAAGGAGAGAAGGAGAAGTGTCCGAGGACCAGCACCA
CTACCGTGATCCAGACGGCAGCGATAGCAACGACCCTGCGGAGTGCGCGA
CCCTACAGATGAGGGCGCAGGGGGAAAGAAGAGGCTCTTAGGACACAGGC
CAAAAAGGAAGAAAAAGGCTCGACGCTCTTTCTCCTTTCCTCCTTGTCGT
GGGGGCCTCCCGTTTCACTTTCACCCTAAGGACAACAAGCGGGCTCCTCC
TCCAAAGCCACCTG

Coding sequence (CDS) from alignment at scaffold_11:573811..576174+

>mRNA_5787 ID=mRNA_5787|Name=jgi.p|Nanoce1779_2|590315|organism=Nannochloropsis oceanica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_11:573811..576174+ (Nannochloropsis oceanica)
ATGAGGGAAGTAGGCCGGCGCGTCTGGGGCGAGGGAAGGAGGAAAGACCT
TGCGAACAACGGGCACCGGAGCGTAAAGCAACCCATGATGCTGTTGCTGC
TGTTGTTGTTGTTGCTGATGATGATGATGATGGTGAGAGTGAAGGTGGAG
GTAGCTGTGAGCAGCCTGAGGATTTTCGGGGGTCTTAGAAGACGAGGAAG
CGACGGAGCAACAGAAAGTGGAAGCAGGCAAGCCTTCAGACGCCGCTTCT
CCTTCGTAGGAGAAGTAAGAGATAAACCGCGGCTCGTCGTTAAACTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGTTGCTGCTGTTCGACGCCCGTCAGCA
CATTCCCCCTAGCGAACGCCATCCGTCGCTGCAGCTGCAGTACCTGCTGC
TGCTGCTGGTGAAATAA

Synonyms

Publications