jgi.p|Nanoce1779_2|590313, mRNA_5786 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590313
Unique Name	mRNA_5786
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1214
Alignment location	scaffold_11:572597..573810 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590399
Track	FilteredModels2
ProteinId	590313

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:572597..573810 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590313	gene_5786	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590313	mRNA_5786-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5786	CDS_5786	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:572597..573810+
coding sequence from alignment at scaffold_11:572597..573810+

mRNA sequence

>mRNA_5786 ID=mRNA_5786|Name=jgi.p|Nanoce1779_2|590313|organism=Nannochloropsis oceanica|type=mRNA|length=1214bp
GAGTGCTGTGGCGTCCTTTCATGCGCGTTTTTATTCATTTTTTTGTTTAT
TTGTGTTGTTGGGCGGCCGTACGGCCTTGCATGTTGTTGGGGTCATGGGC
ATTGAAAATGCCTCTCTTATGGAAAGGAAAAATGCTCTCTCTCTCTCTCT
CCCTCTCCCTCTCTCTCTCTCCCTCTCTCTTTTTTTTTTTTTTTTTTTTT
CCCTTCCTTTCTAAAAACGCGCGCGCAGGTGTGCATGAGTAAGTGTGTTG
CTGCCTGGCCTTTGTAGTTGTAGCTGTGTTGAAATGTTTAGGGTAATGAT
TTGCCACGGTTATCCTATCATCCTCCTATTTTTTTGTAGGAAAAATAATT
GTCATTCTCTCGTTGCTCATTCTCTTGTTACTCTCTCACTCTCCTTTCCC
TTCGTCAATCTCTGTTTTTTTTTTTCAACGAACGCGGCGTATCGATTTCC
ATACCACCGACGTGGTCTATACCCTCGCCTTGCCCAGGGTTTAATAAGCG
TCTCTTCGATTGCCGGTTTGCTCATTAATGTTTTTGTGCGGGGAGTAAAA
GATGGTGGTGGCGGTGAGGATGAATGGTGGGTCACTCACCTTTCTTCTTG
ACTCTTTCTCTTACTCCTTTTCCCTCCCTTCAGTTCCTTCCTCCCACCTG
GCGCTAGGTGGATTAAAGTGATATACTGCCACGTGCGGTGTGTCTCCCTT
GCTTCAATTTCCAACTCTTATGCTATTCCGCAATCTTTCTACTTGATTTC
TAGTGGCTCTTGTTCTCGGTCGTCGACTCGACTCGGACATAATAAAAGAT
AGGACGATGCTCTATGTGATCCATTTTTTATTTTGTTGTTTTCTTCCCGG
TCTACTTCTTCCTCTCGTCTCACTTACAAGCTACTCGTGTGAATCCCTTT
CCCTCCTCCTTTTGAACTCTCACGCATGCATAGATTGGTAGGTAGAGGTC
CTTTGAGAGTCCGTCCTCTCTTTGTCTTCACTCACCTCGCTCTTCCCGTC
TCTCTGAAGCACACATGTACACGTGTCAAAATAACAAAAAGAAAGAAAAA
GAAAATTCCTTGCTACGCACGTGTGTCCCCTATCTCTCCCCTATCTCTCT
CTCCCCTACCCCCCGCCTCTTCGGTCCTAGGTGTGCATCAAAACCTGAAC
CCCATGGAAATACGACTGAGCGCATAAGCTCGCTGCTCGGCTCCTGAATC
CTCCCCCTCCCCCC

protein sequence of jgi.p|Nanoce1779_2|590313

>mRNA_5786-protein ID=mRNA_5786-protein|Name=jgi.p|Nanoce1779_2|590313|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MFRVMICHGYPIILLFFCRKNNCHSLVAHSLVTLSLSFPFVNLCFFFSTN
AAYRFPYHRRGLYPRLAQGLISVSSIAGLLINVFVRGVKDGGGGEDEWWV
THLSS*

mRNA from alignment at scaffold_11:572597..573810+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5786 ID=mRNA_5786|Name=jgi.p|Nanoce1779_2|590313|organism=Nannochloropsis oceanica|type=mRNA|length=1214bp|location=Sequence derived from alignment at scaffold_11:572597..573810+ (Nannochloropsis oceanica)
GAGTGCTGTGGCGTCCTTTCATGCGCGTTTTTATTCATTTTTTTGTTTAT
TTGTGTTGTTGGGCGGCCGTACGGCCTTGCATGTTGTTGGGGTCATGGGC
ATTGAAAATGCCTCTCTTATGGAAAGGAAAAATGCTCTCTCTCTCTCTCT
CCCTCTCCCTCTCTCTCTCTCCCTCTCTCTTTTTTTTTTTTTTTTTTTTT
CCCTTCCTTTCTAAAAACGCGCGCGCAGGTGTGCATGAGTAAGTGTGTTG
CTGCCTGGCCTTTGTAGTTGTAGCTGTGTTGAAATGTTTAGGGTAATGAT
TTGCCACGGTTATCCTATCATCCTCCTATTTTTTTGTAGGAAAAATAATT
GTCATTCTCTCGTTGCTCATTCTCTTGTTACTCTCTCACTCTCCTTTCCC
TTCGTCAATCTCTGTTTTTTTTTTTCAACGAACGCGGCGTATCGATTTCC
ATACCACCGACGTGGTCTATACCCTCGCCTTGCCCAGGGTTTAATAAGCG
TCTCTTCGATTGCCGGTTTGCTCATTAATGTTTTTGTGCGGGGAGTAAAA
GATGGTGGTGGCGGTGAGGATGAATGGTGGGTCACTCACCTTTCTTCTTG
ACTCTTTCTCTTACTCCTTTTCCCTCCCTTCAGTTCCTTCCTCCCACCTG
GCGCTAGGTGGATTAAAGTGATATACTGCCACGTGCGGTGTGTCTCCCTT
GCTTCAATTTCCAACTCTTATGCTATTCCGCAATCTTTCTACTTGATTTC
TAGTGGCTCTTGTTCTCGGTCGTCGACTCGACTCGGACATAATAAAAGAT
AGGACGATGCTCTATGTGATCCATTTTTTATTTTGTTGTTTTCTTCCCGG
TCTACTTCTTCCTCTCGTCTCACTTACAAGCTACTCGTGTGAATCCCTTT
CCCTCCTCCTTTTGAACTCTCACGCATGCATAGATTGGTAGGTAGAGGTC
CTTTGAGAGTCCGTCCTCTCTTTGTCTTCACTCACCTCGCTCTTCCCGTC
TCTCTGAAGCACACATGTACACGTGTCAAAATAACAAAAAGAAAGAAAAA
GAAAATTCCTTGCTACGCACGTGTGTCCCCTATCTCTCCCCTATCTCTCT
CTCCCCTACCCCCCGCCTCTTCGGTCCTAGGTGTGCATCAAAACCTGAAC
CCCATGGAAATACGACTGAGCGCATAAGCTCGCTGCTCGGCTCCTGAATC
CTCCCCCTCCCCCC

Coding sequence (CDS) from alignment at scaffold_11:572597..573810+

>mRNA_5786 ID=mRNA_5786|Name=jgi.p|Nanoce1779_2|590313|organism=Nannochloropsis oceanica|type=CDS|length=318bp|location=Sequence derived from alignment at scaffold_11:572597..573810+ (Nannochloropsis oceanica)
ATGTTTAGGGTAATGATTTGCCACGGTTATCCTATCATCCTCCTATTTTT
TTGTAGGAAAAATAATTGTCATTCTCTCGTTGCTCATTCTCTTGTTACTC
TCTCACTCTCCTTTCCCTTCGTCAATCTCTGTTTTTTTTTTTCAACGAAC
GCGGCGTATCGATTTCCATACCACCGACGTGGTCTATACCCTCGCCTTGC
CCAGGGTTTAATAAGCGTCTCTTCGATTGCCGGTTTGCTCATTAATGTTT
TTGTGCGGGGAGTAAAAGATGGTGGTGGCGGTGAGGATGAATGGTGGGTC
ACTCACCTTTCTTCTTGA

Synonyms

Publications