jgi.p|Nanoce1779_2|590298, mRNA_5781 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590298
Unique NamemRNA_5781
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length689
Alignment locationscaffold_11:562912..564067 -

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Properties
Property NameValue
TranscriptId590384
TrackFilteredModels2
ProteinId590298
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:562912..564067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590298gene_5781Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590298mRNA_5781-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5781CDS_5781Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5781 ID=mRNA_5781|Name=jgi.p|Nanoce1779_2|590298|organism=Nannochloropsis oceanica|type=mRNA|length=689bp
ACAGGCCCGATCTTCTTGCCCAAAAGCCACATCACCAGCACCGCCACCAG
CCCAATTATGGCATCCGAGACCACTTCGGAAGTTGCCACGCGCGAGGCAC
TTGAACAACAGCCCTTTATCGACAATCACTGGCTCCTCTACAATGGCCCG
TTACGTCTTGACACTGTCCTCGAGTACTTTTCCCTCAGTAAATTTTATGA
CCGGCGTTCGTGCAATGAGGAGCTGCGGATGCAAGGCGCAGAGGACATTC
GTCTGGAAGATTTGGAGATGATGCGTGGTCTGCAATATTTAGCGGAGGAG
GTTCCGGGGCTCAAGCCAGAGAATCCAATTTTTGTTATTAAGAAGGTACG
GGGAGGGAGAAGGGTTGGAAGGGAGAGTAAAGTATGTCTATGACGTTTTT
TTACCTCGTAGTATTAATCATCAAGTGGCTTATCCTCTGTCCATCCCTGC
TTCCTTCAGGTCCTCCGCACTGAAAAGGAGGAACCTCAGGTTCTAGACGT
GTACTATGTTTTGCAAAACATGGTCTACCAAGCCCCTACCATCTTCTCGG
TTCTCAACGCGAGGCTGCGTCGTTGCGCCCACATGCTGAACAAGGCGCAA
AAGACCATGAAGCGCGCCGTAGCCTATGGAGGAGAAGGAGGAACCATAGA
GGAGGGAGGGACGGAGGGAGGACAGGAAGCAGGATGGGG
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protein sequence of jgi.p|Nanoce1779_2|590298

>mRNA_5781-protein ID=mRNA_5781-protein|Name=jgi.p|Nanoce1779_2|590298|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MASETTSEVATREALEQQPFIDNHWLLYNGPLRLDTVLEYFSLSKFYDRR
SCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENPIFVIKKVRGG
RRVGRESKVCL*
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mRNA from alignment at scaffold_11:562912..564067-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5781 ID=mRNA_5781|Name=jgi.p|Nanoce1779_2|590298|organism=Nannochloropsis oceanica|type=mRNA|length=1156bp|location=Sequence derived from alignment at scaffold_11:562912..564067- (Nannochloropsis oceanica)
ACAGGCCCGATCTTCTTGCCCAAAAGCCACATCACCAGCACCGCCACCAG
CCCAATTATGGCATCCGAGACCACTTCGGAAGTTGCCACGCGCGAGGTGA
GTGGTCTTCGAGAGAGTACGGCAGACGCTGTGTGGGGAGGAATAAATAGC
GGCACGACGAAAATGTCTGGGGCCGCACTTATCCCCTACTTCATTCGACC
AAGTCCGCAAATATTGCCAGACGCATCTAGCTGTAGACACACAAGCCGTT
CATGCCCCCCGCATAGATAGTACCTGTTATCTGGATTGAGATGCCAGTGA
AAATTCTGTTTAACAGGGAGCCCATATGTGCCCCCCTCCCCCCCCCCCTT
GCCTTTGCACACCGAATTGTTTCTATAAGCACATACATCGTATATCTTTC
CATGCTAGTTATAGCATCATGTTGTTTTCAATTAACATTTACCCATGAAA
TAAGAATCGTGTCTCCACTCCTTTCACGTGAACAGCAACGCTTGATTCTA
CGAAAAGATCTGAAACCCCTCCTCCCTCTCTCCCTGCCTCCCTCCATCCC
CTCCCTGCTCCAGGCACTTGAACAACAGCCCTTTATCGACAATCACTGGC
TCCTCTACAATGGCCCGTTACGTCTTGACACTGTCCTCGAGTACTTTTCC
CTCAGTAAATTTTATGACCGGCGTTCGTGCAATGAGGAGCTGCGGATGCA
AGGCGCAGAGGACATTCGTCTGGAAGATTTGGAGATGATGCGTGGTCTGC
AATATTTAGCGGAGGAGGTTCCGGGGCTCAAGCCAGAGAATCCAATTTTT
GTTATTAAGAAGGTACGGGGAGGGAGAAGGGTTGGAAGGGAGAGTAAAGT
ATGTCTATGACGTTTTTTTACCTCGTAGTATTAATCATCAAGTGGCTTAT
CCTCTGTCCATCCCTGCTTCCTTCAGGTCCTCCGCACTGAAAAGGAGGAA
CCTCAGGTTCTAGACGTGTACTATGTTTTGCAAAACATGGTCTACCAAGC
CCCTACCATCTTCTCGGTTCTCAACGCGAGGCTGCGTCGTTGCGCCCACA
TGCTGAACAAGGCGCAAAAGACCATGAAGCGCGCCGTAGCCTATGGAGGA
GAAGGAGGAACCATAGAGGAGGGAGGGACGGAGGGAGGACAGGAAGCAGG
ATGGGG
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Coding sequence (CDS) from alignment at scaffold_11:562912..564067-

>mRNA_5781 ID=mRNA_5781|Name=jgi.p|Nanoce1779_2|590298|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_11:562912..564067- (Nannochloropsis oceanica)
GCACTTGAACAACAGCCCTTTATCGACAATCACTGGCTCCTCTACAATGG
CCCGTTACGTCTTGACACTGTCCTCGAGTACTTTTCCCTCAGTAAATTTT
ATGACCGGCGTTCGTGCAATGAGGAGCTGCGGATGCAAGGCGCAGAGGAC
ATTCGTCTGGAAGATTTGGAGATGATGCGTGGTCTGCAATATTTAGCGGA
GGAGGTTCCGGGGCTCAAGCCAGAGAATCCAATTTTTGTTATTAAGAAGG
TACGGGGAGGGAGAAGGGTTGGAAGGGAGAGTAAAGTATGTCTATGAATG
GCATCCGAGACCACTTCGGAAGTTGCCACGCGCGAGGCACTTGAACAACA
GCCCTTTATCGACAATCACTGGCTCCTCTACAATGGCCCGTTACGTCTTG
ACACTGTCCTCGAGTACTTTTCCCTCAGTAAATTTTATGACCGGCGTTCG
TGCAATGAGGAGCTGCGGATGCAAGGCGCAGAGGACATTCGTCTGGAAGA
TTTGGAGATGATGCGTGGTCTGCAATATTTAGCGGAGGAGGTTCCGGGGC
TCAAGCCAGAGAATCCAATTTTTGTTATTAAGAAGGTACGGGGAGGGAGA
AGGGTTGGAAGGGAGAGTAAAGTATGTCTATGAATGGCATCCGAGACCAC
TTCGGAAGTTGCCACGCGCGAG
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Synonyms
Publications