jgi.p|Nanoce1779_2|590293, mRNA_5780 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590293
Unique NamemRNA_5780
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1131
Alignment locationscaffold_11:560242..561372 -

Link to JBrowse

Properties
Property NameValue
TranscriptId590379
TrackFilteredModels2
ProteinId590293
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:560242..561372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590293gene_5780Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590293mRNA_5780-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5780CDS_5780Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5780 ID=mRNA_5780|Name=jgi.p|Nanoce1779_2|590293|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp
AAAAAACACAGGCAGCTCTCTCACATCAGTGAGAAAAACTATGTTTGGCA
TCTTGGGTCGGTTAAATCCGTTTGGCAGCGGCGGTGGGGAGGACAATGGC
TGCGACAAGGATGCCATACTGCCAGCCCTTGCCAATGACACGACACTGGA
GGTGGCGATCAAAACGGAAGACGCAATGCAGGTTGAGCTCCCCCTTTACC
AGGAAGGCATGACTTTGCTTGTGGAGCTGCGTGAGGTGTTGTGCTTGGAC
GGAAAGGAGTCGGAGGAGCCGAGCCTCCTTATCAAAATTGAAGGGGCGGA
GGCCAAGGAGACAATCACCCGGCTGGTGCGCAAGAGCGGAGGAGGAGGTG
CCCGGGAGCGTGTCCTACACTCGCGAGAGGATGGTGACAACCACGAGAAC
AGCAGCATATGTACTTCAACTGTGCCTGCTCAGCGCAGGGCCAATGTCAA
TGCCACAACCGAAGAGTCCGAAACGGCCAACCGATACGATGACCAAATTC
AAGGAGAACCGGACGTGGACATTGAACCGGAGTTCCAAGACATCCCCACC
GCCGACAAACGCACCAGTCATCCTCTCCCGCGTGCCCTGGCCTGTTTGAA
AACTAACATGATCACCTCTCCCGACCTCAGGTCGGTGGTGCGCCGTCGTT
CCCAAGATGCGGAGGCTGGAAGCGCAGCCGCCGGTGCTTCATCAGCAGCA
AGCAAGACTCCCGCTAAGCGCTCGCGAGTCAGCAGAGAGGGTGCAAGACA
AGGAGGAGGAGTAGATGATATCCACGTGAAAAACATCACCAATGGCGCTG
CCCCTGATTCTCCTCCCACTCATAGCCTCACCAGCATGGGCTCGCCTGAG
CCGGCTCGACGCACCCGCATCTCGACACGTGGTTCGGGCCGTCGGACCAC
TAGGGGGAGCCTACTTTGAAAGAGAGAGGAAAGATGTGATTAAAGGAGAT
ATTCGATCGATAAGAAAGAAAGATGTTGAGTGTTGAGGTATGAAAAAGGG
AAGTGCGTGCATACTGTCTGCGCTCGATTAAATGTGCCATGGAGGACCCC
GAGAATAAATGGAACGGGAGAAGTAAAAAGTGTTCCAGGCGATGGCCTAC
AAATAATATGAACGACAAGGCTATGAATTGC
back to top

protein sequence of jgi.p|Nanoce1779_2|590293

>mRNA_5780-protein ID=mRNA_5780-protein|Name=jgi.p|Nanoce1779_2|590293|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MFGILGRLNPFGSGGGEDNGCDKDAILPALANDTTLEVAIKTEDAMQVEL
PLYQEGMTLLVELREVLCLDGKESEEPSLLIKIEGAEAKETITRLVRKSG
GGGARERVLHSREDGDNHENSSICTSTVPAQRRANVNATTEESETANRYD
DQIQGEPDVDIEPEFQDIPTADKRTSHPLPRALACLKTNMITSPDLRSVV
RRRSQDAEAGSAAAGASSAASKTPAKRSRVSREGARQGGGVDDIHVKNIT
NGAAPDSPPTHSLTSMGSPEPARRTRISTRGSGRRTTRGSLL*
back to top

mRNA from alignment at scaffold_11:560242..561372-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5780 ID=mRNA_5780|Name=jgi.p|Nanoce1779_2|590293|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp|location=Sequence derived from alignment at scaffold_11:560242..561372- (Nannochloropsis oceanica)
AAAAAACACAGGCAGCTCTCTCACATCAGTGAGAAAAACTATGTTTGGCA
TCTTGGGTCGGTTAAATCCGTTTGGCAGCGGCGGTGGGGAGGACAATGGC
TGCGACAAGGATGCCATACTGCCAGCCCTTGCCAATGACACGACACTGGA
GGTGGCGATCAAAACGGAAGACGCAATGCAGGTTGAGCTCCCCCTTTACC
AGGAAGGCATGACTTTGCTTGTGGAGCTGCGTGAGGTGTTGTGCTTGGAC
GGAAAGGAGTCGGAGGAGCCGAGCCTCCTTATCAAAATTGAAGGGGCGGA
GGCCAAGGAGACAATCACCCGGCTGGTGCGCAAGAGCGGAGGAGGAGGTG
CCCGGGAGCGTGTCCTACACTCGCGAGAGGATGGTGACAACCACGAGAAC
AGCAGCATATGTACTTCAACTGTGCCTGCTCAGCGCAGGGCCAATGTCAA
TGCCACAACCGAAGAGTCCGAAACGGCCAACCGATACGATGACCAAATTC
AAGGAGAACCGGACGTGGACATTGAACCGGAGTTCCAAGACATCCCCACC
GCCGACAAACGCACCAGTCATCCTCTCCCGCGTGCCCTGGCCTGTTTGAA
AACTAACATGATCACCTCTCCCGACCTCAGGTCGGTGGTGCGCCGTCGTT
CCCAAGATGCGGAGGCTGGAAGCGCAGCCGCCGGTGCTTCATCAGCAGCA
AGCAAGACTCCCGCTAAGCGCTCGCGAGTCAGCAGAGAGGGTGCAAGACA
AGGAGGAGGAGTAGATGATATCCACGTGAAAAACATCACCAATGGCGCTG
CCCCTGATTCTCCTCCCACTCATAGCCTCACCAGCATGGGCTCGCCTGAG
CCGGCTCGACGCACCCGCATCTCGACACGTGGTTCGGGCCGTCGGACCAC
TAGGGGGAGCCTACTTTGAAAGAGAGAGGAAAGATGTGATTAAAGGAGAT
ATTCGATCGATAAGAAAGAAAGATGTTGAGTGTTGAGGTATGAAAAAGGG
AAGTGCGTGCATACTGTCTGCGCTCGATTAAATGTGCCATGGAGGACCCC
GAGAATAAATGGAACGGGAGAAGTAAAAAGTGTTCCAGGCGATGGCCTAC
AAATAATATGAACGACAAGGCTATGAATTGC
back to top

Coding sequence (CDS) from alignment at scaffold_11:560242..561372-

>mRNA_5780 ID=mRNA_5780|Name=jgi.p|Nanoce1779_2|590293|organism=Nannochloropsis oceanica|type=CDS|length=879bp|location=Sequence derived from alignment at scaffold_11:560242..561372- (Nannochloropsis oceanica)
ATGTTTGGCATCTTGGGTCGGTTAAATCCGTTTGGCAGCGGCGGTGGGGA
GGACAATGGCTGCGACAAGGATGCCATACTGCCAGCCCTTGCCAATGACA
CGACACTGGAGGTGGCGATCAAAACGGAAGACGCAATGCAGGTTGAGCTC
CCCCTTTACCAGGAAGGCATGACTTTGCTTGTGGAGCTGCGTGAGGTGTT
GTGCTTGGACGGAAAGGAGTCGGAGGAGCCGAGCCTCCTTATCAAAATTG
AAGGGGCGGAGGCCAAGGAGACAATCACCCGGCTGGTGCGCAAGAGCGGA
GGAGGAGGTGCCCGGGAGCGTGTCCTACACTCGCGAGAGGATGGTGACAA
CCACGAGAACAGCAGCATATGTACTTCAACTGTGCCTGCTCAGCGCAGGG
CCAATGTCAATGCCACAACCGAAGAGTCCGAAACGGCCAACCGATACGAT
GACCAAATTCAAGGAGAACCGGACGTGGACATTGAACCGGAGTTCCAAGA
CATCCCCACCGCCGACAAACGCACCAGTCATCCTCTCCCGCGTGCCCTGG
CCTGTTTGAAAACTAACATGATCACCTCTCCCGACCTCAGGTCGGTGGTG
CGCCGTCGTTCCCAAGATGCGGAGGCTGGAAGCGCAGCCGCCGGTGCTTC
ATCAGCAGCAAGCAAGACTCCCGCTAAGCGCTCGCGAGTCAGCAGAGAGG
GTGCAAGACAAGGAGGAGGAGTAGATGATATCCACGTGAAAAACATCACC
AATGGCGCTGCCCCTGATTCTCCTCCCACTCATAGCCTCACCAGCATGGG
CTCGCCTGAGCCGGCTCGACGCACCCGCATCTCGACACGTGGTTCGGGCC
GTCGGACCACTAGGGGGAGCCTACTTTGA
back to top
Synonyms
Publications