jgi.p|Nanoce1779_2|577819, mRNA_578 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577819
Unique NamemRNA_578
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length447
Alignment locationscaffold_3:1421232..1421678 -

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Properties
Property NameValue
TranscriptId577905
TrackFilteredModels2
ProteinId577819
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1421232..1421678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577819gene_578Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577819mRNA_578-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_578CDS_578Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_578 ID=mRNA_578|Name=jgi.p|Nanoce1779_2|577819|organism=Nannochloropsis oceanica|type=mRNA|length=447bp
GGGACGGCTTGTAGGACTAAAACCATGCCTGGGACGTCCATGGTGAACCC
TGTCATTACAAGTGTCCTCCTTCTCTCGCGAAAGTATTTTATGGAAGAGT
GGTATCCAACGGGAGTAAAAGCATCCTCGAATCGACTTGTGCCATCGGGA
AGATTGCTAAAGGCATTGATCAGCTCCGCTGTCCCTAGACAACCCTAAGC
TTGATCGACGGGGTTCAAACTACCACGGTGACAAGCCCCCCAATGTTAAC
GCCCAAGACGCCATCGCCACAGGCAGCGTCGAGGCAAACTCTATCGAGAT
GGACTTCCAGGGCACGTTGATGTAGAGGATATCAATTCCGTTTAAGTCTG
AGACAAGTCCATTGTACCGCGAAAACGCCGCCTCCCCTTCCTCCGCTTTC
TTCGCCTCCTCCCTCCTCCCCCTTTCCCTCCTCCATCCTCCCCCGCC
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protein sequence of jgi.p|Nanoce1779_2|577819

>mRNA_578-protein ID=mRNA_578-protein|Name=jgi.p|Nanoce1779_2|577819|organism=Nannochloropsis oceanica|type=polypeptide|length=58bp
MPGTSMVNPVITSVLLLSRKYFMEEWYPTGVKASSNRLVPSGRLLKALIS
SAVPRQP*
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mRNA from alignment at scaffold_3:1421232..1421678-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_578 ID=mRNA_578|Name=jgi.p|Nanoce1779_2|577819|organism=Nannochloropsis oceanica|type=mRNA|length=447bp|location=Sequence derived from alignment at scaffold_3:1421232..1421678- (Nannochloropsis oceanica)
GGGACGGCTTGTAGGACTAAAACCATGCCTGGGACGTCCATGGTGAACCC
TGTCATTACAAGTGTCCTCCTTCTCTCGCGAAAGTATTTTATGGAAGAGT
GGTATCCAACGGGAGTAAAAGCATCCTCGAATCGACTTGTGCCATCGGGA
AGATTGCTAAAGGCATTGATCAGCTCCGCTGTCCCTAGACAACCCTAAGC
TTGATCGACGGGGTTCAAACTACCACGGTGACAAGCCCCCCAATGTTAAC
GCCCAAGACGCCATCGCCACAGGCAGCGTCGAGGCAAACTCTATCGAGAT
GGACTTCCAGGGCACGTTGATGTAGAGGATATCAATTCCGTTTAAGTCTG
AGACAAGTCCATTGTACCGCGAAAACGCCGCCTCCCCTTCCTCCGCTTTC
TTCGCCTCCTCCCTCCTCCCCCTTTCCCTCCTCCATCCTCCCCCGCC
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Coding sequence (CDS) from alignment at scaffold_3:1421232..1421678-

>mRNA_578 ID=mRNA_578|Name=jgi.p|Nanoce1779_2|577819|organism=Nannochloropsis oceanica|type=CDS|length=174bp|location=Sequence derived from alignment at scaffold_3:1421232..1421678- (Nannochloropsis oceanica)
ATGCCTGGGACGTCCATGGTGAACCCTGTCATTACAAGTGTCCTCCTTCT
CTCGCGAAAGTATTTTATGGAAGAGTGGTATCCAACGGGAGTAAAAGCAT
CCTCGAATCGACTTGTGCCATCGGGAAGATTGCTAAAGGCATTGATCAGC
TCCGCTGTCCCTAGACAACCCTAA
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Synonyms
Publications