jgi.p|Nanoce1779_2|590291, mRNA_5779 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590291
Unique NamemRNA_5779
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1139
Alignment locationscaffold_11:559103..560241 +

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Properties
Property NameValue
TranscriptId590377
TrackFilteredModels2
ProteinId590291
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:559103..560241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590291gene_5779Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590291mRNA_5779-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5779CDS_5779Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5779 ID=mRNA_5779|Name=jgi.p|Nanoce1779_2|590291|organism=Nannochloropsis oceanica|type=mRNA|length=1139bp
TGGAAAGATCGGCTAAAACAACGATGCCTCAAACGGGTGCGTGACGAGCG
CGGTCGCCTCATCCAGGAGCTGCGGGGAATCAAGTCTCCTCAGCCCTCGG
GATCCTCTTTGCGTCCTTCCACCCTGAACGCCTTGTCACCGACCCGCTTG
AACCAACCACGACCTGGAGGAAGTTATGACGGGCCGCGATGTCCCACCCC
GTCGTTTATAAGCAGTGCCGTCATGTCCATTTTGCAAGACGAGATGCGAG
CGGGCAGTCGAACTCAAGTAGAAGGGGAGGCAGGCGGGAACGAGCTGGAA
AAGGATGAGCAGCTGGTTTCCCCGATAACATTGATGTCAACGGCGGATCT
GTCAGAAGATCAGCGACACCAGCGACGACAACAACAGCAAACAAACAACT
TCACGACTCCATCGCAAGGGCCTCCCGCCGGCCGGCGAGGGAGCACCAGA
GCACACCTGTCCATGGACGAGCTTATCAAGAACAACAAGGAATGGAAGGA
AGATGACAAAGACGTTGAAGATGGAGTCGATGCCTTATCTCCCGAGGAGC
AACTAGAGCTGATGCAATGTATTGAGGAGGCTTTGCAAGCCGAAGTGCGT
GCCGCAGAGGAACGCGAATTGGAAGAATACTCACGACTGGAAAATCATGA
GATCGAAGCGTCTGTTGAAGCGTTGTATGATGACGATATCCTCCTATGTG
CGGATGATGTGGCCGTGCTATGCCCCTGTTGTAAGGCAAATTTTTTGTTG
TGTCAGAACGGGGAGGCGTTCTGTGCGTGTGGCTTGCGAGTGGAGGCCAC
GAAGGGGGCAGGGAGTTTGGCATGGCTGCAAGAGCTGTTGGCAGAGGTGT
ATGCGCATCACAAAGGGATGTGTGTGGTCAAGGAGCCGGTATTTTTCCAG
AGAGGCATGGGTGATCTGTGGGTGGAATGTGTGACGTGTAGTTGGTCGGC
ACAAATATTGTGATGGAGAGGAGAGAAGGGACGGAGGGTTTGTACACACA
TGAAATGTAAATGGATGGCAACTGAATTTTAATTTCATGCACATCATTTG
TCGACGGGACAGGAAAAAGAATGTATGGGCTACTTTCAATTCTCGGGAGA
ATTTTTGGCAAAGCAGCAACGGTAATGTTATGTTTCTGA
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protein sequence of jgi.p|Nanoce1779_2|590291

>mRNA_5779-protein ID=mRNA_5779-protein|Name=jgi.p|Nanoce1779_2|590291|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MSILQDEMRAGSRTQVEGEAGGNELEKDEQLVSPITLMSTADLSEDQRHQ
RRQQQQTNNFTTPSQGPPAGRRGSTRAHLSMDELIKNNKEWKEDDKDVED
GVDALSPEEQLELMQCIEEALQAEVRAAEERELEEYSRLENHEIEASVEA
LYDDDILLCADDVAVLCPCCKANFLLCQNGEAFCACGLRVEATKGAGSLA
WLQELLAEVYAHHKGMCVVKEPVFFQRGMGDLWVECVTCSWSAQIL*
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mRNA from alignment at scaffold_11:559103..560241+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5779 ID=mRNA_5779|Name=jgi.p|Nanoce1779_2|590291|organism=Nannochloropsis oceanica|type=mRNA|length=1139bp|location=Sequence derived from alignment at scaffold_11:559103..560241+ (Nannochloropsis oceanica)
TGGAAAGATCGGCTAAAACAACGATGCCTCAAACGGGTGCGTGACGAGCG
CGGTCGCCTCATCCAGGAGCTGCGGGGAATCAAGTCTCCTCAGCCCTCGG
GATCCTCTTTGCGTCCTTCCACCCTGAACGCCTTGTCACCGACCCGCTTG
AACCAACCACGACCTGGAGGAAGTTATGACGGGCCGCGATGTCCCACCCC
GTCGTTTATAAGCAGTGCCGTCATGTCCATTTTGCAAGACGAGATGCGAG
CGGGCAGTCGAACTCAAGTAGAAGGGGAGGCAGGCGGGAACGAGCTGGAA
AAGGATGAGCAGCTGGTTTCCCCGATAACATTGATGTCAACGGCGGATCT
GTCAGAAGATCAGCGACACCAGCGACGACAACAACAGCAAACAAACAACT
TCACGACTCCATCGCAAGGGCCTCCCGCCGGCCGGCGAGGGAGCACCAGA
GCACACCTGTCCATGGACGAGCTTATCAAGAACAACAAGGAATGGAAGGA
AGATGACAAAGACGTTGAAGATGGAGTCGATGCCTTATCTCCCGAGGAGC
AACTAGAGCTGATGCAATGTATTGAGGAGGCTTTGCAAGCCGAAGTGCGT
GCCGCAGAGGAACGCGAATTGGAAGAATACTCACGACTGGAAAATCATGA
GATCGAAGCGTCTGTTGAAGCGTTGTATGATGACGATATCCTCCTATGTG
CGGATGATGTGGCCGTGCTATGCCCCTGTTGTAAGGCAAATTTTTTGTTG
TGTCAGAACGGGGAGGCGTTCTGTGCGTGTGGCTTGCGAGTGGAGGCCAC
GAAGGGGGCAGGGAGTTTGGCATGGCTGCAAGAGCTGTTGGCAGAGGTGT
ATGCGCATCACAAAGGGATGTGTGTGGTCAAGGAGCCGGTATTTTTCCAG
AGAGGCATGGGTGATCTGTGGGTGGAATGTGTGACGTGTAGTTGGTCGGC
ACAAATATTGTGATGGAGAGGAGAGAAGGGACGGAGGGTTTGTACACACA
TGAAATGTAAATGGATGGCAACTGAATTTTAATTTCATGCACATCATTTG
TCGACGGGACAGGAAAAAGAATGTATGGGCTACTTTCAATTCTCGGGAGA
ATTTTTGGCAAAGCAGCAACGGTAATGTTATGTTTCTGA
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Coding sequence (CDS) from alignment at scaffold_11:559103..560241+

>mRNA_5779 ID=mRNA_5779|Name=jgi.p|Nanoce1779_2|590291|organism=Nannochloropsis oceanica|type=CDS|length=741bp|location=Sequence derived from alignment at scaffold_11:559103..560241+ (Nannochloropsis oceanica)
ATGTCCATTTTGCAAGACGAGATGCGAGCGGGCAGTCGAACTCAAGTAGA
AGGGGAGGCAGGCGGGAACGAGCTGGAAAAGGATGAGCAGCTGGTTTCCC
CGATAACATTGATGTCAACGGCGGATCTGTCAGAAGATCAGCGACACCAG
CGACGACAACAACAGCAAACAAACAACTTCACGACTCCATCGCAAGGGCC
TCCCGCCGGCCGGCGAGGGAGCACCAGAGCACACCTGTCCATGGACGAGC
TTATCAAGAACAACAAGGAATGGAAGGAAGATGACAAAGACGTTGAAGAT
GGAGTCGATGCCTTATCTCCCGAGGAGCAACTAGAGCTGATGCAATGTAT
TGAGGAGGCTTTGCAAGCCGAAGTGCGTGCCGCAGAGGAACGCGAATTGG
AAGAATACTCACGACTGGAAAATCATGAGATCGAAGCGTCTGTTGAAGCG
TTGTATGATGACGATATCCTCCTATGTGCGGATGATGTGGCCGTGCTATG
CCCCTGTTGTAAGGCAAATTTTTTGTTGTGTCAGAACGGGGAGGCGTTCT
GTGCGTGTGGCTTGCGAGTGGAGGCCACGAAGGGGGCAGGGAGTTTGGCA
TGGCTGCAAGAGCTGTTGGCAGAGGTGTATGCGCATCACAAAGGGATGTG
TGTGGTCAAGGAGCCGGTATTTTTCCAGAGAGGCATGGGTGATCTGTGGG
TGGAATGTGTGACGTGTAGTTGGTCGGCACAAATATTGTGA
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Synonyms
Publications