jgi.p|Nanoce1779_2|37225, mRNA_5778 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|37225
Unique NamemRNA_5778
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length459
Alignment locationscaffold_11:558300..558758 -

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Properties
Property NameValue
TranscriptId37311
TrackFilteredModels2
ProteinId37225
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:558300..558758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|37225gene_5778Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|37225mRNA_5778-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5778CDS_5778Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5778 ID=mRNA_5778|Name=jgi.p|Nanoce1779_2|37225|organism=Nannochloropsis oceanica|type=mRNA|length=459bp
AGAGCATTAAGCAAGCCATGCACTCATTATGGCTGACTTCCTCTTTGGTT
TTAAACTATAGCTTCCCTTTTCCGTTCTGCCTTCCCCAAACTACAGCCTT
TTCTCTTTACGTGATACCTGTTGTTTTTGGTCTCCTTGCACGACTTTAAC
TCCTCGTTTTCGTCCATAGATGGAATGCCCCCTTCTTCCCAGATTTGGCT
GCTCTCCTGTTCTATTTTCCTGTCTTCTCTCATAAAAACTCAAAGGCAAT
ACTTATGTCTCCTCTCCTCTCATGACACCGAAAAACAATGCCCAAAAGCA
TCTAAACTCCTTACATTTCCGCAAACTCCTCCACGTCCTCCATCATCTTC
ACCGCCTCCGACACATTCGGGGAGAAGCAAAAACAGGATAATCCAACGCA
AACGCACTTAAAAACATCGCCGCCTGCATCCCCGCCTCCCTCTCCGGGTC
ACTCATGAG
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protein sequence of jgi.p|Nanoce1779_2|37225

>mRNA_5778-protein ID=mRNA_5778-protein|Name=jgi.p|Nanoce1779_2|37225|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MPPSSQIWLLSCSIFLSSLIKTQRQYLCLLSSHDTEKQCPKASKLLTFPQ
TPPRPPSSSPPPTHSGRSKNRIIQRKRT*
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mRNA from alignment at scaffold_11:558300..558758-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5778 ID=mRNA_5778|Name=jgi.p|Nanoce1779_2|37225|organism=Nannochloropsis oceanica|type=mRNA|length=459bp|location=Sequence derived from alignment at scaffold_11:558300..558758- (Nannochloropsis oceanica)
AGAGCATTAAGCAAGCCATGCACTCATTATGGCTGACTTCCTCTTTGGTT
TTAAACTATAGCTTCCCTTTTCCGTTCTGCCTTCCCCAAACTACAGCCTT
TTCTCTTTACGTGATACCTGTTGTTTTTGGTCTCCTTGCACGACTTTAAC
TCCTCGTTTTCGTCCATAGATGGAATGCCCCCTTCTTCCCAGATTTGGCT
GCTCTCCTGTTCTATTTTCCTGTCTTCTCTCATAAAAACTCAAAGGCAAT
ACTTATGTCTCCTCTCCTCTCATGACACCGAAAAACAATGCCCAAAAGCA
TCTAAACTCCTTACATTTCCGCAAACTCCTCCACGTCCTCCATCATCTTC
ACCGCCTCCGACACATTCGGGGAGAAGCAAAAACAGGATAATCCAACGCA
AACGCACTTAAAAACATCGCCGCCTGCATCCCCGCCTCCCTCTCCGGGTC
ACTCATGAG
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Coding sequence (CDS) from alignment at scaffold_11:558300..558758-

>mRNA_5778 ID=mRNA_5778|Name=jgi.p|Nanoce1779_2|37225|organism=Nannochloropsis oceanica|type=CDS|length=237bp|location=Sequence derived from alignment at scaffold_11:558300..558758- (Nannochloropsis oceanica)
ATGCCCCCTTCTTCCCAGATTTGGCTGCTCTCCTGTTCTATTTTCCTGTC
TTCTCTCATAAAAACTCAAAGGCAATACTTATGTCTCCTCTCCTCTCATG
ACACCGAAAAACAATGCCCAAAAGCATCTAAACTCCTTACATTTCCGCAA
ACTCCTCCACGTCCTCCATCATCTTCACCGCCTCCGACACATTCGGGGAG
AAGCAAAAACAGGATAATCCAACGCAAACGCACTTAA
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Synonyms
Publications