jgi.p|Nanoce1779_2|590289, mRNA_5777 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590289
Unique Name	mRNA_5777
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2717
Alignment location	scaffold_11:556022..558738 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590375
Track	FilteredModels2
ProteinId	590289

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:556022..558738 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590289	gene_5777	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590289	mRNA_5777-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5777	CDS_5777	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:556022..558738+
coding sequence from alignment at scaffold_11:556022..558738+

mRNA sequence

>mRNA_5777 ID=mRNA_5777|Name=jgi.p|Nanoce1779_2|590289|organism=Nannochloropsis oceanica|type=mRNA|length=2717bp
ACAGGCTTGCTGGACGGCTTCTTTCTCGTCACCAGCAGCACCTTCGTCTT
CCTTCACTACTTCTTTACAGCATGTCGACCAAGCGCCCCTCCGAAGAGAC
CACCAATGGGTCCGCGTCCAAGAAAGGGAAGGAATCCCTCGTCAGCGCCC
TCTCCACCAAGGCCGTCGACACTGTCCGCGTCCTCTCCGCCGACATCGTG
CAAAAAGCCAACAGCGGGCACCCTGGTGCACCCATGAGCTTGGCCCCGCT
TGCTTATCTGCTGTGGACCAAAGTCATGAAGTACAACCCCCAGGACCCTG
AATGGCTGGCGCGCGATCGTTTCGTCTTGTCCAACGGCCACGCTTGTGCC
TTGCTTTATGGAATGTTGCATCTCACGGGCTACCCTCAGGTGACGATGGA
CGATTTGAAGAACTTCAGGCAGATTGATTCGATCACGGCGGGGCATCCGG
AGAACACTCTAATCAAGGGGATTGAGGTCTCAACGGGGCCATTGGGGCAG
GGGATCTCGAACGCAGTGGGTTTAGCGATTGCTGAGAGCCACTTGGCAGC
TGTGTTTAACAAGGAGGGCCACGCTAAGGTGATTGACAACTATACCTATG
TGATTTGTGGGGACGGGTGCTTGCAGGAGGGGGTGTCGAGCGAGGCCAGT
TCTCTGGCGGGGCATTTGGGACTGGGGAAATTAATTGTTTACTATGACGA
CAACCGGATCACGATTGATGGGGATACGGGATTGTCGTTCACGGAGGATG
TGGAGAAGAGGTACGAGGCTTATGGGTGGCATGTGCAGACCGTGGATGAC
GTCCAGGACCTTGATTCGTTGATGGCAGCGACGGAGGCAGCCAAGGCCGT
GACGGACAAGCCGAGCATGATCAAAGTGAAGACGGAGATCGGGTTTGGGA
GCAAGAAGCAGGGGTCGCATTCTGTCCACGGGTCGCCGTTGGGGGCGGAG
GATCTGAAGCAGTTGAAGGAAAAATTTGGATTCAACCCGGAGGAGACGTT
CCTGGTAGCCCCTGAGGTGAGTGAGTTGTTTTTGGCGGCGGGCGCGAGGG
GGGCGGCGGCGCAGGCGGCTTGGCAGATGGGGTTGGACGGATATAAGGGA
GCTTACCCCAAGGAGACTGCGGAGTTGGTGCGACAGTGTGAGCACAAGAT
GCCGGATGGGTGGAAGGAGGCGTTGCCGCGGTATAGCGCGACGGACAAGG
CCATGGCGACGAGGAAGTTCTCGGAGATTGCGCTGAACGCATTGGCGCCC
ATCATGCCGGAGTTGGTTGGGGGGTCGGCGGATCTGACGCCTTCGACGCT
GACAGCTTTGGCATGTTCGGGCGATTATCAGAAGGAGACTCCCGCGGGGA
GGTATTTCAGGTTTGGAGTGAGGGAGCATGGGATGACGGCGGTGGCAAAC
GGGATATTCGCCTACGGGGCGTTGAGACCCTTTGTCGCGACGTTTTTGAA
TTTCATTGGTTATGCCTGGGGTTCTGTGAGGTTGACTGCATTGTCTCACT
TGGGGGTAATTTTTGTGATGACGCACGATTCAATCGGATTGGGGGAGGAC
GGACCCACGCACCAGCCGGTGGAGATCCTGGAGCAGTGTCGGGTGATGCC
TAATTTGAACTTAATCAGACCTGCAGATGGGAACGAGGTGTCGGGTGCTT
ACATATCGGCAGTCGACCATCCCTTCACGCCCACGGTGTTGGCCTTGAGT
CGACAGAACCTGCCGAATCTGGAGGGGAGCAGCGTGGAGAAAACTCTGTT
AGGCGCTTATGTCCTGTCGGAGGCGGGAGGCAATGAAGAGGAGGGGGGGC
CAGAACTCATTTTAACGGGTTCGGGTTCGGAGGTAGCGATTGCGGTCGAG
GCAGCCAAGAAGCTGGTGGCGGAGGGGGTTAGGGTGCGTGTGGTGAGTTT
CCCTAGTTGGGAGCTGTTCGAGCAGCAGGAGAAGGATTACAGGTTGGAAG
TTTTCCCGGTGGGAGTGCCGGTTGTGAGTGTTGAGGCATCTTCGATCCAT
GGCTGGGCGAAGTACTCGCATGCAGCTCTGGGCTTGACCTGGTTTGGGGC
CTCGGGGCCTTATACAAAGGTGTATGAGAAATTTGGGTTGACGGTCGAAA
ATCTGGCGGAGAAGGCGAAGGAGGTGATGTCTTTCTATAAGGATGGGGGT
AAGCCGGTACCGAGTTTGATTGACGTGCCCGTGATTTCGGGTCACTATGA
GCACAAACCGGTGGCCACCTCACAGGCATAAACAGTTGTTGTCGGTGTGA
GTTGGTGCTTGCAGGGTTGAACAGGATGCTCATGAGTGACCCGGAGAGGG
AGGCGGGGATGCAGGCGGCGATGTTTTTAAGTGCGTTTGCGTTGGATTAT
CCTGTTTTTGCTTCTCCCCGAATGTGTCGGAGGCGGTGAAGATGATGGAG
GACGTGGAGGAGTTTGCGGAAATGTAAGGAGTTTAGATGCTTTTGGGCAT
TGTTTTTCGGTGTCATGAGAGGAGAGGAGACATAAGTATTGCCTTTGAGT
TTTTATGAGAGAAGACAGGAAAATAGAACAGGAGAGCAGCCAAATCTGGG
AAGAAGGGGGCATTCCATCTATGGACGAAAACGAGGAGTTAAAGTCGTGC
AAGGAGACCAAAAACAACAGGTATCACGTAAAGAGAAAAGGCTGTAGTTT
GGGGAAGGCAGAACGGAAAAGGGAAGCTATAGTTTAAAACCAAAGAGGAA
GTCAGCCATAATGAGTG

protein sequence of jgi.p|Nanoce1779_2|590289

>mRNA_5777-protein ID=mRNA_5777-protein|Name=jgi.p|Nanoce1779_2|590289|organism=Nannochloropsis oceanica|type=polypeptide|length=720bp
MSTKRPSEETTNGSASKKGKESLVSALSTKAVDTVRVLSADIVQKANSGH
PGAPMSLAPLAYLLWTKVMKYNPQDPEWLARDRFVLSNGHACALLYGMLH
LTGYPQVTMDDLKNFRQIDSITAGHPENTLIKGIEVSTGPLGQGISNAVG
LAIAESHLAAVFNKEGHAKVIDNYTYVICGDGCLQEGVSSEASSLAGHLG
LGKLIVYYDDNRITIDGDTGLSFTEDVEKRYEAYGWHVQTVDDVQDLDSL
MAATEAAKAVTDKPSMIKVKTEIGFGSKKQGSHSVHGSPLGAEDLKQLKE
KFGFNPEETFLVAPEVSELFLAAGARGAAAQAAWQMGLDGYKGAYPKETA
ELVRQCEHKMPDGWKEALPRYSATDKAMATRKFSEIALNALAPIMPELVG
GSADLTPSTLTALACSGDYQKETPAGRYFRFGVREHGMTAVANGIFAYGA
LRPFVATFLNFIGYAWGSVRLTALSHLGVIFVMTHDSIGLGEDGPTHQPV
EILEQCRVMPNLNLIRPADGNEVSGAYISAVDHPFTPTVLALSRQNLPNL
EGSSVEKTLLGAYVLSEAGGNEEEGGPELILTGSGSEVAIAVEAAKKLVA
EGVRVRVVSFPSWELFEQQEKDYRLEVFPVGVPVVSVEASSIHGWAKYSH
AALGLTWFGASGPYTKVYEKFGLTVENLAEKAKEVMSFYKDGGKPVPSLI
DVPVISGHYEHKPVATSQA*

mRNA from alignment at scaffold_11:556022..558738+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5777 ID=mRNA_5777|Name=jgi.p|Nanoce1779_2|590289|organism=Nannochloropsis oceanica|type=mRNA|length=2717bp|location=Sequence derived from alignment at scaffold_11:556022..558738+ (Nannochloropsis oceanica)
ACAGGCTTGCTGGACGGCTTCTTTCTCGTCACCAGCAGCACCTTCGTCTT
CCTTCACTACTTCTTTACAGCATGTCGACCAAGCGCCCCTCCGAAGAGAC
CACCAATGGGTCCGCGTCCAAGAAAGGGAAGGAATCCCTCGTCAGCGCCC
TCTCCACCAAGGCCGTCGACACTGTCCGCGTCCTCTCCGCCGACATCGTG
CAAAAAGCCAACAGCGGGCACCCTGGTGCACCCATGAGCTTGGCCCCGCT
TGCTTATCTGCTGTGGACCAAAGTCATGAAGTACAACCCCCAGGACCCTG
AATGGCTGGCGCGCGATCGTTTCGTCTTGTCCAACGGCCACGCTTGTGCC
TTGCTTTATGGAATGTTGCATCTCACGGGCTACCCTCAGGTGACGATGGA
CGATTTGAAGAACTTCAGGCAGATTGATTCGATCACGGCGGGGCATCCGG
AGAACACTCTAATCAAGGGGATTGAGGTCTCAACGGGGCCATTGGGGCAG
GGGATCTCGAACGCAGTGGGTTTAGCGATTGCTGAGAGCCACTTGGCAGC
TGTGTTTAACAAGGAGGGCCACGCTAAGGTGATTGACAACTATACCTATG
TGATTTGTGGGGACGGGTGCTTGCAGGAGGGGGTGTCGAGCGAGGCCAGT
TCTCTGGCGGGGCATTTGGGACTGGGGAAATTAATTGTTTACTATGACGA
CAACCGGATCACGATTGATGGGGATACGGGATTGTCGTTCACGGAGGATG
TGGAGAAGAGGTACGAGGCTTATGGGTGGCATGTGCAGACCGTGGATGAC
GTCCAGGACCTTGATTCGTTGATGGCAGCGACGGAGGCAGCCAAGGCCGT
GACGGACAAGCCGAGCATGATCAAAGTGAAGACGGAGATCGGGTTTGGGA
GCAAGAAGCAGGGGTCGCATTCTGTCCACGGGTCGCCGTTGGGGGCGGAG
GATCTGAAGCAGTTGAAGGAAAAATTTGGATTCAACCCGGAGGAGACGTT
CCTGGTAGCCCCTGAGGTGAGTGAGTTGTTTTTGGCGGCGGGCGCGAGGG
GGGCGGCGGCGCAGGCGGCTTGGCAGATGGGGTTGGACGGATATAAGGGA
GCTTACCCCAAGGAGACTGCGGAGTTGGTGCGACAGTGTGAGCACAAGAT
GCCGGATGGGTGGAAGGAGGCGTTGCCGCGGTATAGCGCGACGGACAAGG
CCATGGCGACGAGGAAGTTCTCGGAGATTGCGCTGAACGCATTGGCGCCC
ATCATGCCGGAGTTGGTTGGGGGGTCGGCGGATCTGACGCCTTCGACGCT
GACAGCTTTGGCATGTTCGGGCGATTATCAGAAGGAGACTCCCGCGGGGA
GGTATTTCAGGTTTGGAGTGAGGGAGCATGGGATGACGGCGGTGGCAAAC
GGGATATTCGCCTACGGGGCGTTGAGACCCTTTGTCGCGACGTTTTTGAA
TTTCATTGGTTATGCCTGGGGTTCTGTGAGGTTGACTGCATTGTCTCACT
TGGGGGTAATTTTTGTGATGACGCACGATTCAATCGGATTGGGGGAGGAC
GGACCCACGCACCAGCCGGTGGAGATCCTGGAGCAGTGTCGGGTGATGCC
TAATTTGAACTTAATCAGACCTGCAGATGGGAACGAGGTGTCGGGTGCTT
ACATATCGGCAGTCGACCATCCCTTCACGCCCACGGTGTTGGCCTTGAGT
CGACAGAACCTGCCGAATCTGGAGGGGAGCAGCGTGGAGAAAACTCTGTT
AGGCGCTTATGTCCTGTCGGAGGCGGGAGGCAATGAAGAGGAGGGGGGGC
CAGAACTCATTTTAACGGGTTCGGGTTCGGAGGTAGCGATTGCGGTCGAG
GCAGCCAAGAAGCTGGTGGCGGAGGGGGTTAGGGTGCGTGTGGTGAGTTT
CCCTAGTTGGGAGCTGTTCGAGCAGCAGGAGAAGGATTACAGGTTGGAAG
TTTTCCCGGTGGGAGTGCCGGTTGTGAGTGTTGAGGCATCTTCGATCCAT
GGCTGGGCGAAGTACTCGCATGCAGCTCTGGGCTTGACCTGGTTTGGGGC
CTCGGGGCCTTATACAAAGGTGTATGAGAAATTTGGGTTGACGGTCGAAA
ATCTGGCGGAGAAGGCGAAGGAGGTGATGTCTTTCTATAAGGATGGGGGT
AAGCCGGTACCGAGTTTGATTGACGTGCCCGTGATTTCGGGTCACTATGA
GCACAAACCGGTGGCCACCTCACAGGCATAAACAGTTGTTGTCGGTGTGA
GTTGGTGCTTGCAGGGTTGAACAGGATGCTCATGAGTGACCCGGAGAGGG
AGGCGGGGATGCAGGCGGCGATGTTTTTAAGTGCGTTTGCGTTGGATTAT
CCTGTTTTTGCTTCTCCCCGAATGTGTCGGAGGCGGTGAAGATGATGGAG
GACGTGGAGGAGTTTGCGGAAATGTAAGGAGTTTAGATGCTTTTGGGCAT
TGTTTTTCGGTGTCATGAGAGGAGAGGAGACATAAGTATTGCCTTTGAGT
TTTTATGAGAGAAGACAGGAAAATAGAACAGGAGAGCAGCCAAATCTGGG
AAGAAGGGGGCATTCCATCTATGGACGAAAACGAGGAGTTAAAGTCGTGC
AAGGAGACCAAAAACAACAGGTATCACGTAAAGAGAAAAGGCTGTAGTTT
GGGGAAGGCAGAACGGAAAAGGGAAGCTATAGTTTAAAACCAAAGAGGAA
GTCAGCCATAATGAGTG

Coding sequence (CDS) from alignment at scaffold_11:556022..558738+

>mRNA_5777 ID=mRNA_5777|Name=jgi.p|Nanoce1779_2|590289|organism=Nannochloropsis oceanica|type=CDS|length=2160bp|location=Sequence derived from alignment at scaffold_11:556022..558738+ (Nannochloropsis oceanica)
ATGTCGACCAAGCGCCCCTCCGAAGAGACCACCAATGGGTCCGCGTCCAA
GAAAGGGAAGGAATCCCTCGTCAGCGCCCTCTCCACCAAGGCCGTCGACA
CTGTCCGCGTCCTCTCCGCCGACATCGTGCAAAAAGCCAACAGCGGGCAC
CCTGGTGCACCCATGAGCTTGGCCCCGCTTGCTTATCTGCTGTGGACCAA
AGTCATGAAGTACAACCCCCAGGACCCTGAATGGCTGGCGCGCGATCGTT
TCGTCTTGTCCAACGGCCACGCTTGTGCCTTGCTTTATGGAATGTTGCAT
CTCACGGGCTACCCTCAGGTGACGATGGACGATTTGAAGAACTTCAGGCA
GATTGATTCGATCACGGCGGGGCATCCGGAGAACACTCTAATCAAGGGGA
TTGAGGTCTCAACGGGGCCATTGGGGCAGGGGATCTCGAACGCAGTGGGT
TTAGCGATTGCTGAGAGCCACTTGGCAGCTGTGTTTAACAAGGAGGGCCA
CGCTAAGGTGATTGACAACTATACCTATGTGATTTGTGGGGACGGGTGCT
TGCAGGAGGGGGTGTCGAGCGAGGCCAGTTCTCTGGCGGGGCATTTGGGA
CTGGGGAAATTAATTGTTTACTATGACGACAACCGGATCACGATTGATGG
GGATACGGGATTGTCGTTCACGGAGGATGTGGAGAAGAGGTACGAGGCTT
ATGGGTGGCATGTGCAGACCGTGGATGACGTCCAGGACCTTGATTCGTTG
ATGGCAGCGACGGAGGCAGCCAAGGCCGTGACGGACAAGCCGAGCATGAT
CAAAGTGAAGACGGAGATCGGGTTTGGGAGCAAGAAGCAGGGGTCGCATT
CTGTCCACGGGTCGCCGTTGGGGGCGGAGGATCTGAAGCAGTTGAAGGAA
AAATTTGGATTCAACCCGGAGGAGACGTTCCTGGTAGCCCCTGAGGTGAG
TGAGTTGTTTTTGGCGGCGGGCGCGAGGGGGGCGGCGGCGCAGGCGGCTT
GGCAGATGGGGTTGGACGGATATAAGGGAGCTTACCCCAAGGAGACTGCG
GAGTTGGTGCGACAGTGTGAGCACAAGATGCCGGATGGGTGGAAGGAGGC
GTTGCCGCGGTATAGCGCGACGGACAAGGCCATGGCGACGAGGAAGTTCT
CGGAGATTGCGCTGAACGCATTGGCGCCCATCATGCCGGAGTTGGTTGGG
GGGTCGGCGGATCTGACGCCTTCGACGCTGACAGCTTTGGCATGTTCGGG
CGATTATCAGAAGGAGACTCCCGCGGGGAGGTATTTCAGGTTTGGAGTGA
GGGAGCATGGGATGACGGCGGTGGCAAACGGGATATTCGCCTACGGGGCG
TTGAGACCCTTTGTCGCGACGTTTTTGAATTTCATTGGTTATGCCTGGGG
TTCTGTGAGGTTGACTGCATTGTCTCACTTGGGGGTAATTTTTGTGATGA
CGCACGATTCAATCGGATTGGGGGAGGACGGACCCACGCACCAGCCGGTG
GAGATCCTGGAGCAGTGTCGGGTGATGCCTAATTTGAACTTAATCAGACC
TGCAGATGGGAACGAGGTGTCGGGTGCTTACATATCGGCAGTCGACCATC
CCTTCACGCCCACGGTGTTGGCCTTGAGTCGACAGAACCTGCCGAATCTG
GAGGGGAGCAGCGTGGAGAAAACTCTGTTAGGCGCTTATGTCCTGTCGGA
GGCGGGAGGCAATGAAGAGGAGGGGGGGCCAGAACTCATTTTAACGGGTT
CGGGTTCGGAGGTAGCGATTGCGGTCGAGGCAGCCAAGAAGCTGGTGGCG
GAGGGGGTTAGGGTGCGTGTGGTGAGTTTCCCTAGTTGGGAGCTGTTCGA
GCAGCAGGAGAAGGATTACAGGTTGGAAGTTTTCCCGGTGGGAGTGCCGG
TTGTGAGTGTTGAGGCATCTTCGATCCATGGCTGGGCGAAGTACTCGCAT
GCAGCTCTGGGCTTGACCTGGTTTGGGGCCTCGGGGCCTTATACAAAGGT
GTATGAGAAATTTGGGTTGACGGTCGAAAATCTGGCGGAGAAGGCGAAGG
AGGTGATGTCTTTCTATAAGGATGGGGGTAAGCCGGTACCGAGTTTGATT
GACGTGCCCGTGATTTCGGGTCACTATGAGCACAAACCGGTGGCCACCTC
ACAGGCATAA

Synonyms

Publications