jgi.p|Nanoce1779_2|590285, mRNA_5776 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590285
Unique NamemRNA_5776
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length639
Alignment locationscaffold_11:554844..555482 -

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Properties
Property NameValue
TranscriptId590371
TrackFilteredModels2
ProteinId590285
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:554844..555482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590285gene_5776Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590285mRNA_5776-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5776CDS_5776Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5776 ID=mRNA_5776|Name=jgi.p|Nanoce1779_2|590285|organism=Nannochloropsis oceanica|type=mRNA|length=639bp
AGCCACACACCCGCAGAATGTTCCTCCATCTCTTCATAATATCGCGGTCG
GGCGGCCTGATCTACAATAAGGATCTGAGCGTCAGTGCGCCCCGCCTCAC
CGTGAACGAATGGCTCGTCTTGGGGTCGACCTTCCACGGCCTGCACTCCA
TCGCGGCGCAAGTCGCGCCCTTGGCCTCGTCAGGCATTGAGAAACTCGAG
TGCGACAATCTGAAGCTCCAGTGCTTTCAAAGTCGGACGGCTGTTAAGTT
TGTCTTGACAGCCGAGCCGGGCACGCCGGACTTGGACAATGTGCTGCATG
GGATTTACGAGCTCTACGCGGATTACGTGCTGAAGAACCCCTTCTACGAA
ATGGACATGCCGATTCGCTGCGAGTTGTTTCAACAGGGCGTGGAGCGGTT
GATCGAGCGGAATTCCCGGGAGCTGAAAAAGGCGCGCAGTGATGGGTGAG
ATGGCTTTAGTGAGGGAGTGAGCCAATGACCGAGTGAGTAGAGTGCCCGT
GGCAGGTTAATGATTCATGTGTAGCATTTGGACGAAAGTATCCATGAGAT
GTACAGAGCGAGGGTACTGGCAAGTAAGTCAAATTTAGCCGAATGATAAA
TCAGTGAGTAGATCGCCATCAAAAACAATCTTTGCCGTC
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protein sequence of jgi.p|Nanoce1779_2|590285

>mRNA_5776-protein ID=mRNA_5776-protein|Name=jgi.p|Nanoce1779_2|590285|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MFLHLFIISRSGGLIYNKDLSVSAPRLTVNEWLVLGSTFHGLHSIAAQVA
PLASSGIEKLECDNLKLQCFQSRTAVKFVLTAEPGTPDLDNVLHGIYELY
ADYVLKNPFYEMDMPIRCELFQQGVERLIERNSRELKKARSDG*
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mRNA from alignment at scaffold_11:554844..555482-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5776 ID=mRNA_5776|Name=jgi.p|Nanoce1779_2|590285|organism=Nannochloropsis oceanica|type=mRNA|length=639bp|location=Sequence derived from alignment at scaffold_11:554844..555482- (Nannochloropsis oceanica)
AGCCACACACCCGCAGAATGTTCCTCCATCTCTTCATAATATCGCGGTCG
GGCGGCCTGATCTACAATAAGGATCTGAGCGTCAGTGCGCCCCGCCTCAC
CGTGAACGAATGGCTCGTCTTGGGGTCGACCTTCCACGGCCTGCACTCCA
TCGCGGCGCAAGTCGCGCCCTTGGCCTCGTCAGGCATTGAGAAACTCGAG
TGCGACAATCTGAAGCTCCAGTGCTTTCAAAGTCGGACGGCTGTTAAGTT
TGTCTTGACAGCCGAGCCGGGCACGCCGGACTTGGACAATGTGCTGCATG
GGATTTACGAGCTCTACGCGGATTACGTGCTGAAGAACCCCTTCTACGAA
ATGGACATGCCGATTCGCTGCGAGTTGTTTCAACAGGGCGTGGAGCGGTT
GATCGAGCGGAATTCCCGGGAGCTGAAAAAGGCGCGCAGTGATGGGTGAG
ATGGCTTTAGTGAGGGAGTGAGCCAATGACCGAGTGAGTAGAGTGCCCGT
GGCAGGTTAATGATTCATGTGTAGCATTTGGACGAAAGTATCCATGAGAT
GTACAGAGCGAGGGTACTGGCAAGTAAGTCAAATTTAGCCGAATGATAAA
TCAGTGAGTAGATCGCCATCAAAAACAATCTTTGCCGTC
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Coding sequence (CDS) from alignment at scaffold_11:554844..555482-

>mRNA_5776 ID=mRNA_5776|Name=jgi.p|Nanoce1779_2|590285|organism=Nannochloropsis oceanica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_11:554844..555482- (Nannochloropsis oceanica)
ATGTTCCTCCATCTCTTCATAATATCGCGGTCGGGCGGCCTGATCTACAA
TAAGGATCTGAGCGTCAGTGCGCCCCGCCTCACCGTGAACGAATGGCTCG
TCTTGGGGTCGACCTTCCACGGCCTGCACTCCATCGCGGCGCAAGTCGCG
CCCTTGGCCTCGTCAGGCATTGAGAAACTCGAGTGCGACAATCTGAAGCT
CCAGTGCTTTCAAAGTCGGACGGCTGTTAAGTTTGTCTTGACAGCCGAGC
CGGGCACGCCGGACTTGGACAATGTGCTGCATGGGATTTACGAGCTCTAC
GCGGATTACGTGCTGAAGAACCCCTTCTACGAAATGGACATGCCGATTCG
CTGCGAGTTGTTTCAACAGGGCGTGGAGCGGTTGATCGAGCGGAATTCCC
GGGAGCTGAAAAAGGCGCGCAGTGATGGGTGA
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Synonyms
Publications