jgi.p|Nanoce1779_2|590277, mRNA_5774 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590277
Unique NamemRNA_5774
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1096
Alignment locationscaffold_11:548300..549569 +

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Properties
Property NameValue
TranscriptId590363
TrackFilteredModels2
ProteinId590277
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:548300..549569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590277gene_5774Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590277mRNA_5774-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5774CDS_5774Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5774 ID=mRNA_5774|Name=jgi.p|Nanoce1779_2|590277|organism=Nannochloropsis oceanica|type=mRNA|length=1096bp
AGTTGATGGTTTCTCCGTTTGCGGTCCCCGGGCAGGAGGTTTGGTTTAGG
AAGAGGGGGATGTTGAGGAGGATGGTGCTACCGAGTGGGCTGGTGGGCAA
GTTTCTAGAGATTGCCGATGCGAATAGTAGGAAGCCACCAGATGGCATCG
AGACATGCGGTGTTCTCGCTGGGGTCCAAGACGGGGCAGGGCTCATGCGT
TGCACCACTCTAATTATACCCAAGCAAGAGGGCACGTCGGACACCGTCGG
CATGACACACGAAGAGGAACTCATTGGGTACTGCTGTTCGGCAGATGGGA
AGAATTTGCTGCAGCTTGGCTGGATCCATACGCACCCGAGTCAGAAGTGC
TTCATGTCTTCTGTCGACATCCACACGCATTGCGGCTATCAAACCATGTT
GCCAGAAGCCGTCGCCGTGGTCGTCGCGCTGTGCAATCCTCAGAAGCCAG
AAGTGGGCGTCTTCCGCCTGACCGAACCCGAGGGCTTGCAGCTTATTCAG
AGGTGCGAACTACGCGGTTTCCACCCTCATCCTCTGCCCGACCCCCAAAT
CTACAAGAACCACCACGCGGTCATGTGGGAAGACTCAGCGTTTGCCGTCG
TGGACTTGAGATGATGCGATCTTACAATAAGGAGGAAGGAAAATTCAACG
AAATGGATGTACACGTAATTAAGCAAGCATGAGAAGAAACATAAAGTTTA
CCTGAAGAAGCTCGAAGCTCGGATCTAATGTATACCGAGAGCTTGCGATG
ATGCCGCGTATGCCATTATTTAGTTTCGGTGCCCTTGTTTCTCGCTATGG
AAAATGCTGCAACCATTTCAAGGCCCAAAGCTTCGTCAAGGCTGTGAAGG
AGACGTTAAAGGACGTGGTTGTCTTACCGTGGCGCATTTTTCGCCTTCAC
AAAAGACTCTGACGGGCTTGGATTGACGCGCTTGTGCTTGAATCAACAAC
TGCAGAAAGGCAAGCAAGGGGATCTTGCCCTGCTTGTGTTTCCATGCCTG
CGAGACAGGGCCAGGACACGGCACGCATGCCGTTGTTTGAGAATCAGGTG
TCCCTGGTCATGCACCACCTAGCGCTGGAAAGGCGCTTGCCTCAGG
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protein sequence of jgi.p|Nanoce1779_2|590277

>mRNA_5774-protein ID=mRNA_5774-protein|Name=jgi.p|Nanoce1779_2|590277|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MVSPFAVPGQEVWFRKRGMLRRMVLPSGLVGKFLEIADANSRKPPDGIET
CGVLAGVQDGAGLMRCTTLIIPKQEGTSDTVGMTHEEELIGYCCSADGKN
LLQLGWIHTHPSQKCFMSSVDIHTHCGYQTMLPEAVAVVVALCNPQKPEV
GVFRLTEPEGLQLIQRCELRGFHPHPLPDPQIYKNHHAVMWEDSAFAVVD
LR*
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mRNA from alignment at scaffold_11:548300..549569+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5774 ID=mRNA_5774|Name=jgi.p|Nanoce1779_2|590277|organism=Nannochloropsis oceanica|type=mRNA|length=1270bp|location=Sequence derived from alignment at scaffold_11:548300..549569+ (Nannochloropsis oceanica)
AGTTGATGGTTTCTCCGTTTGCGGTCCCCGGGCAGGAGGTTTGGTTTAGG
AAGAGGGGGATGTTGAGGAGGATGGTGCTACCGAGTGGGCTGGTGGGCAA
GTTTCTAGAGATTGCCGATGCGAATAGTAGGAAGGTGCGTGCTTCGGTGC
TGGTGGGATGAGAGGAGGAGTGATGACAGGGGTGGTTGGATGTATGCTTG
TCATACTCCGTTTTCTCGTCGTTTCCCTCGGATTATTCTATGGGGCCTCA
ATGAAGATCATATTAACCCTGATGTCATTCCTTCTCTCATCTACTCTCCT
TCTCGTAGCCACCAGATGGCATCGAGACATGCGGTGTTCTCGCTGGGGTC
CAAGACGGGGCAGGGCTCATGCGTTGCACCACTCTAATTATACCCAAGCA
AGAGGGCACGTCGGACACCGTCGGCATGACACACGAAGAGGAACTCATTG
GGTACTGCTGTTCGGCAGATGGGAAGAATTTGCTGCAGCTTGGCTGGATC
CATACGCACCCGAGTCAGAAGTGCTTCATGTCTTCTGTCGACATCCACAC
GCATTGCGGCTATCAAACCATGTTGCCAGAAGCCGTCGCCGTGGTCGTCG
CGCTGTGCAATCCTCAGAAGCCAGAAGTGGGCGTCTTCCGCCTGACCGAA
CCCGAGGGCTTGCAGCTTATTCAGAGGTGCGAACTACGCGGTTTCCACCC
TCATCCTCTGCCCGACCCCCAAATCTACAAGAACCACCACGCGGTCATGT
GGGAAGACTCAGCGTTTGCCGTCGTGGACTTGAGATGATGCGATCTTACA
ATAAGGAGGAAGGAAAATTCAACGAAATGGATGTACACGTAATTAAGCAA
GCATGAGAAGAAACATAAAGTTTACCTGAAGAAGCTCGAAGCTCGGATCT
AATGTATACCGAGAGCTTGCGATGATGCCGCGTATGCCATTATTTAGTTT
CGGTGCCCTTGTTTCTCGCTATGGAAAATGCTGCAACCATTTCAAGGCCC
AAAGCTTCGTCAAGGCTGTGAAGGAGACGTTAAAGGACGTGGTTGTCTTA
CCGTGGCGCATTTTTCGCCTTCACAAAAGACTCTGACGGGCTTGGATTGA
CGCGCTTGTGCTTGAATCAACAACTGCAGAAAGGCAAGCAAGGGGATCTT
GCCCTGCTTGTGTTTCCATGCCTGCGAGACAGGGCCAGGACACGGCACGC
ATGCCGTTGTTTGAGAATCAGGTGTCCCTGGTCATGCACCACCTAGCGCT
GGAAAGGCGCTTGCCTCAGG
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Coding sequence (CDS) from alignment at scaffold_11:548300..549569+

>mRNA_5774 ID=mRNA_5774|Name=jgi.p|Nanoce1779_2|590277|organism=Nannochloropsis oceanica|type=CDS|length=1218bp|location=Sequence derived from alignment at scaffold_11:548300..549569+ (Nannochloropsis oceanica)
ATGGTTTCTCCGTTTGCGGTCCCCGGGCAGGAGGTTTGGTTTAGGAAGAG
GGGGATGTTGAGGAGGATGGTGCTACCGAGTGGGCTGGTGGGCAAGTTTC
TAGAGATTGCCGATGCGAATAGTAGGAAGCCACCAGATGGCATCGAGACA
TGCGGTGTTCTCGCTGGGGTCCAAGACGGGGCAGGGCTCATGCGTTGCAC
CACTCTAATTATACCCAAGCAAGAGGGCACGTCGGACACCGTCGGCATGA
CACACGAAGAGGAACTCATTGGGTACTGCTGTTCGGCAGATGGGAAGAAT
TTGCTGCAGCTTGGCTGGATCCATACGCACCCGAGTCAGAAGTGCTTCAT
GTCTTCTGTCGACATCCACACGCATTGCGGCTATCAAACCATGTTGCCAG
AAGCCGTCGCCGTGGTCGTCGCGCTGTGCAATCCTCAGAAGCCAGAAGTG
GGCGTCTTCCGCCTGACCGAACCCGAGGGCTTGCAGCTTATTCAGAGGTG
CGAACTACGCGGTTTCCACCCTCATCCTCTGCCCGACCCCCAAATCTACA
AGAACCACCACGCGGTCATGTGGGAAGACTCAGCGTTTGCCGTCGTGGAC
TTGAGATGAATGGTTTCTCCGTTTGCGGTCCCCGGGCAGGAGGTTTGGTT
TAGGAAGAGGGGGATGTTGAGGAGGATGGTGCTACCGAGTGGGCTGGTGG
GCAAGTTTCTAGAGATTGCCGATGCGAATAGTAGGAAGCCACCAGATGGC
ATCGAGACATGCGGTGTTCTCGCTGGGGTCCAAGACGGGGCAGGGCTCAT
GCGTTGCACCACTCTAATTATACCCAAGCAAGAGGGCACGTCGGACACCG
TCGGCATGACACACGAAGAGGAACTCATTGGGTACTGCTGTTCGGCAGAT
GGGAAGAATTTGCTGCAGCTTGGCTGGATCCATACGCACCCGAGTCAGAA
GTGCTTCATGTCTTCTGTCGACATCCACACGCATTGCGGCTATCAAACCA
TGTTGCCAGAAGCCGTCGCCGTGGTCGTCGCGCTGTGCAATCCTCAGAAG
CCAGAAGTGGGCGTCTTCCGCCTGACCGAACCCGAGGGCTTGCAGCTTAT
TCAGAGGTGCGAACTACGCGGTTTCCACCCTCATCCTCTGCCCGACCCCC
AAATCTACAAGAACCACCACGCGGTCATGTGGGAAGACTCAGCGTTTGCC
GTCGTGGACTTGAGATGA
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Synonyms
Publications