jgi.p|Nanoce1779_2|590270, mRNA_5773 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590270
Unique NamemRNA_5773
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length647
Alignment locationscaffold_11:546300..547089 -

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Properties
Property NameValue
TranscriptId590356
TrackFilteredModels2
ProteinId590270
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:546300..547089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590270gene_5773Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590270mRNA_5773-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5773CDS_5773Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5773 ID=mRNA_5773|Name=jgi.p|Nanoce1779_2|590270|organism=Nannochloropsis oceanica|type=mRNA|length=647bp
GGTGTGATGTAGTGGCGGCGAGGCGGCCTTCCCTCCTGCCGTTGCGTCTA
TCTGATCTCAAATTACGTATACCCGATTCCGACTGAAGCTTAAGAGTCCA
AAGAAAGCAGCACACCCAGGAGTACAGCATCTTTCTCATCTGCACTCATA
CTAGCTTTGTCTCCTACATGTTATTCCGCACCTCGGCGATCCTCGCAAGA
CATAGCTCAAGAACCCAGACCGCTGCAGCTCTCCGTCATCTCAGTAGGAG
CAGCACCAACATCATGACCATCCCTTGCGGGCCAGTCCAAAAATCCATCC
AAGACAAGCTCCAAGACGCCTTGACCCCCGCCCATTTGCAGATCATCAAC
GAAAGCAGCAGTCACAACGTGCCCAAGGGCTCGGAGACACATTTCAAGGT
GGTGGCGATCTCGGCCTTGTTCGAAGGCAAGGGTTTGCTAGCCCGGCATC
GACTGATCAATGGGATTCTCAAAGAGGAGTTAGACACGGGGGTACACGCC
CTTTCGATTGTGGCTAAGACGGCATCGGAGTGGGAGAAGGTGCAAGGCGC
TGTGCCGGCCTCACCGGCCTGCAGAGGGGGAAGCAAGAAATGAGGATAGG
ACGGAATGACGACAAAAAAGGAAATGAAATGCAAAATCGATGTGTAC
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protein sequence of jgi.p|Nanoce1779_2|590270

>mRNA_5773-protein ID=mRNA_5773-protein|Name=jgi.p|Nanoce1779_2|590270|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MLFRTSAILARHSSRTQTAAALRHLSRSSTNIMTIPCGPVQKSIQDKLQD
ALTPAHLQIINESSSHNVPKGSETHFKVVAISALFEGKGLLARHRLINGI
LKEELDTGVHALSIVAKTASEWEKVQGAVPASPACRGGSKK*
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mRNA from alignment at scaffold_11:546300..547089-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5773 ID=mRNA_5773|Name=jgi.p|Nanoce1779_2|590270|organism=Nannochloropsis oceanica|type=mRNA|length=790bp|location=Sequence derived from alignment at scaffold_11:546300..547089- (Nannochloropsis oceanica)
GGTGTGATGTAGTGGCGGCGAGGCGGCCTTCCCTCCTGCCGTTGCGTCTA
TCTGATCTCAAATTACGTATACCCGATTCCGACTGAAGCTTAAGGTACTA
GACTGATTCCTCAATGCTTTCATTGGCAAAGCATGGGCGCCTGGGGGGCT
ATGCTGACATTGTCTGGCACTTCTGTGCACGAATTCAACCTCCCCACTCC
TCACTCCTCTACATTCGCGACACTCAACACACAACAGAGTCCAAAGAAAG
CAGCACACCCAGGAGTACAGCATCTTTCTCATCTGCACTCATACTAGCTT
TGTCTCCTACATGTTATTCCGCACCTCGGCGATCCTCGCAAGACATAGCT
CAAGAACCCAGACCGCTGCAGCTCTCCGTCATCTCAGTAGGAGCAGCACC
AACATCATGACCATCCCTTGCGGGCCAGTCCAAAAATCCATCCAAGACAA
GCTCCAAGACGCCTTGACCCCCGCCCATTTGCAGATCATCAACGAAAGCA
GCAGTCACAACGTGCCCAAGGGCTCGGAGACACATTTCAAGGTGGTGGCG
ATCTCGGCCTTGTTCGAAGGCAAGGGTTTGCTAGCCCGGCATCGACTGAT
CAATGGGATTCTCAAAGAGGAGTTAGACACGGGGGTACACGCCCTTTCGA
TTGTGGCTAAGACGGCATCGGAGTGGGAGAAGGTGCAAGGCGCTGTGCCG
GCCTCACCGGCCTGCAGAGGGGGAAGCAAGAAATGAGGATAGGACGGAAT
GACGACAAAAAAGGAAATGAAATGCAAAATCGATGTGTAC
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Coding sequence (CDS) from alignment at scaffold_11:546300..547089-

>mRNA_5773 ID=mRNA_5773|Name=jgi.p|Nanoce1779_2|590270|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_11:546300..547089- (Nannochloropsis oceanica)
ATGTTATTCCGCACCTCGGCGATCCTCGCAAGACATAGCTCAAGAACCCA
GACCGCTGCAGCTCTCCGTCATCTCAGTAGGAGCAGCACCAACATCATGA
CCATCCCTTGCGGGCCAGTCCAAAAATCCATCCAAGACAAGCTCCAAGAC
GCCTTGACCCCCGCCCATTTGCAGATCATCAACGAAAGCAGCAGTCACAA
CGTGCCCAAGGGCTCGGAGACACATTTCAAGGTGGTGGCGATCTCGGCCT
TGTTCGAAGGCAAGGGTTTGCTAGCCCGGCATCGACTGATCAATGGGATT
CTCAAAGAGGAGTTAGACACGGGGGTACACGCCCTTTCGATTGTGGCTAA
GACGGCATCGGAGTGGGAGAAGGTGCAAGGCGCTGTGCCGGCCTCACCGG
CCTGCAGAGGGGGAAGCAAGAAATGA
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Synonyms
Publications