jgi.p|Nanoce1779_2|630549, mRNA_5772 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|630549
Unique Name	mRNA_5772
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2556
Alignment location	scaffold_11:543636..546299 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	630635
Track	FilteredModels2
ProteinId	630549

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:543636..546299 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630549	gene_5772	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630549	mRNA_5772-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5772	CDS_5772	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:543636..546299+
coding sequence from alignment at scaffold_11:543636..546299+

mRNA sequence

>mRNA_5772 ID=mRNA_5772|Name=jgi.p|Nanoce1779_2|630549|organism=Nannochloropsis oceanica|type=mRNA|length=2556bp
CTGCAGGGATGTCGTGCATCTGGCTCTGTTGCTTGGAGTATCCGGTACAC
GCTTCCAGGAGCATCAGGAATTCCCGGCACGAATGGCAGACGATATTTAT
GATACAGCAGTGTATTTAATTGCCCTGGCGCCGCCCCAGTTGTTTTTTGA
GGGGATGTACAGCCCACGCGAACACGCGCAGCGCCCCCCTTGGAAGGAAG
AGGACGGGGTCTGACCTAGCGAAATGCGGTTTTGTTCTATCGTCCTCTTC
CTTTGAAATTCATCCTTCTTATCTATCCCTACACATCTTCTCGACAGAAG
AGCGTCAGGGGGCTTTGTCAGCCGACCAAAATAAATCTGTTGTTCTGAGG
CCTGGAGTTGCGAGGGCGAGCAAGTGGCTACAGTAGCAAAGAGATACATA
CACCTGCACCAAGCATGGCGCCCTTTTTGTACAGCCCGCCACGAAATCTG
GTCCGGGCCGAGGAATTTGTCGTGGCGGCAGGAGTGCGGAGGAGCAGTCG
CTTCACCTTGTGGCGGACAGTGTCCGGGCGGATAGGAGGGGAACCTCGAT
CGATCGCGCGCACAGGACGAATGGATAAGGAGGAGCATGCACAGGCAGAG
AAGGAAGAAGGCGAGAGGGCGGCCAAGGAAGAGGAGATACACCAAGAGAA
GCTTCGATTGGCAGAGCTGGAGGCTGAAGGAAAGGGGCATCCGCCCATGG
AGGTCAAGGTGGGCTTCCAGCAACGGTGGCGAGAACGCTTTTTCCTGACC
TCGTATGTGTTGGACGCCGTAATCTGCGCAGCCTACGACCAAGTTCTCCT
GCCCCAGACACAAGGCAGTAAGCGACCTGTACTCCTTGTGCCTGGATGGT
GCGGTCGAACGCGGAGCTTTCGGAAGATGGCGGAACGGTTGGCGGCGGAG
GGGTACCCTGTTTATCCCGTGCCTTTGGGGTCGCAGCTTGGGTGCATTGA
TCGTAAGGCGAGCTTGCTAACCACGTTTTTAGACAGACACGGCTTGGAGG
ACGTGTATGTGGTGGCACATTCCATGGGGGGGCTGATAAGCGTGCGGAGT
ATGATGAAAGGAGAGACACGAATTAGACGGTTGATCACCATGGGGACGCC
TTTCCGCGGCACCCACGTCATCTACCTCGGGTACCTAGTCACGTTTGCCT
TGGTAATCGCCCTATCCTTCTGGCTGAGCCCCTTGGCAGGGACGATTTAT
TTGACGTTATTCATCCAGATCCCTTCTCTATGGCAGATGCAGCCCAGCTC
GGGTTTCCTCTCGGAGACACTCGAGTACCTCTCTCGTGTCGCGACGCCTG
TCCAGTGTGTCTATGCCGTCAGGGACCAGATTGTGATTCACAATTGGCGG
CAGGCCTGGAGTCCTACGCGGTTGGGGAGGACGGATGATTTGTGTTTACC
AGAGTATGGGCATATGAATTTGTTCATGGGTGCGTCCGGGATTGAGCTCA
AAACAAATGAATGTAATCAGGAGGAGATTGGCGAGGAGGAGGAGAAGGAG
GAGGAGGAAGAGGAGGAAGAGGAGGAAGAGGAGGAGCAGGAGGAGGAGCA
GGAGGGGGGGAGAGTGAATGCTCAGCAGCAGCGGCCGCAGCATTCGCTGG
AAAAGCGATTGGAGGCGGCGAATGGTATGTGGGGAGGGAGGGGGATCTTT
GGGCATGCTACGGGAGCAGGGGGATCATTCCGTACCGGGAAAAGAAGAAT
GATGGAGGATGAGTAAGGCGAAGGAGTGGGAGTAAGGAGGAAGGCTTTGA
TGAAGATTTTTGTGTAAAATGGTCACAAAGAGTAGGGCAGAAAGGGAGGG
AGGGGGAAAAATATCCACACTCACGTCTCCAGAAGATTTCATCGTGTAAT
TGTTTCTGTGGACAAAGACGAAGGGGATAGAAAGACCAAGCCAGATGAAT
GGAAGGAGAGAAGGAGGTATATATTTTTTATGGTTGCAAGAGAGGCCAAG
CTGAGGGTTTGCTGCTTGCTGGAGCTAGGAATGTGAGATCTGGCTCTGGG
CCAAATAATCACAACAATTTTGTGCTTGTACATGTGGAGGGGTTGAAGTA
GGGGGATGGGGTTTGGAATTAGGGGAAGAGGAGAGAGCAGGAGCAGGACG
AAGAGCAGTGGGCGCAAATGTGTGTTTGGCCTGCATGCTTTTTAAATTAT
AAAAATGTATGATAGAACACGATTTTGCCACTTCTAACAAATGTTTATAT
TCTTGTATGGATGTTCAGATCGATCTACCTATTTTCCCTTCTCCTCAGAC
CTCGTTGCCACGCCGCTATGTCGTGACTGCTCAAAAAAGGGAAATGACGC
CCTCGTATGGCACACTGATTCGTGGGTAGAATGAATGAAAATTGATGGGG
AGGAAGACGAAGAGGGGGAAGGCAGTGAGGGGTAGATGGAGAGAAGAATT
CACGGCGGATTTTGACTGTGCGTACGCAGCTTCTCCTATCGACACTGATC
GCAGCAACAAACAACGTAGATGCCGACCGAGACTGGCGTGGAGATACTAG
AAGGCGGGATAGTGAGAAATGGCAAAGAACAGGACGAAGCCTGAAAGTTC
AGTCCA

protein sequence of jgi.p|Nanoce1779_2|630549

>mRNA_5772-protein ID=mRNA_5772-protein|Name=jgi.p|Nanoce1779_2|630549|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MAPFLYSPPRNLVRAEEFVVAAGVRRSSRFTLWRTVSGRIGGEPRSIART
GRMDKEEHAQAEKEEGERAAKEEEIHQEKLRLAELEAEGKGHPPMEVKVG
FQQRWRERFFLTSYVLDAVICAAYDQVLLPQTQGSKRPVLLVPGWCGRTR
SFRKMAERLAAEGYPVYPVPLGSQLGCIDRKASLLTTFLDRHGLEDVYVV
AHSMGGLISVRSMMKGETRIRRLITMGTPFRGTHVIYLGYLVTFALVIAL
SFWLSPLAGTIYLTLFIQIPSLWQMQPSSGFLSETLEYLSRVATPVQCVY
AVRDQIVIHNWRQAWSPTRLGRTDDLCLPEYGHMNLFMGASGIELKTNEC
NQEEIGEEEEKEEEEEEEEEEEEEQEEEQEGGRVNAQQQRPQHSLEKRLE
AANGMWGGRGIFGHATGAGGSFRTGKRRMMEDE*

mRNA from alignment at scaffold_11:543636..546299+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5772 ID=mRNA_5772|Name=jgi.p|Nanoce1779_2|630549|organism=Nannochloropsis oceanica|type=mRNA|length=2664bp|location=Sequence derived from alignment at scaffold_11:543636..546299+ (Nannochloropsis oceanica)
CTGCAGGGATGTCGTGCATCTGGCTCTGTTGCTTGGAGTATCCGGTACAC
GCTTCCAGGAGCATCAGGAATTCCCGGCACGAATGGCAGACGATATTTAT
GATACAGCAGTGTATTTAATTGCCCTGGCGCCGCCCCAGTTGTTTTTTGA
GGGGATGTACAGCCCACGCGAACACGCGCAGCGCCCCCCTTGGAAGGAAG
AGGACGGGGTCTGACCTAGCGAAATGCGGTTTTGTTCTATCGTCCTCTTC
CTTTGAAATTCATCCTTCTTATCTATCCCTACACATCTTCTCGACAGAAG
AGCGTCAGGGGGCTTTGTCAGCCGACCAAAATAAATCTGTTGTTCTGAGG
CCTGGAGTTGCGAGGGCGAGCAAGTGGCTACAGTAGCAAAGAGATACATA
CACCTGCACCAAGCATGGCGCCCTTTTTGTACAGCCCGCCACGAAATCTG
GTCCGGGCCGAGGAATTTGTCGTGGCGGCAGGAGTGCGGAGGAGCAGTCG
CTTCACCTTGTGGCGGACAGTGTCCGGGCGGATAGGAGGGGAACCTCGAT
CGATCGCGCGCACAGGACGAATGGATAAGGAGGAGCATGCACAGGCAGAG
AAGGAAGAAGGCGAGAGGGCGGCCAAGGAAGAGGAGATACACCAAGAGAA
GCTTCGATTGGCAGAGCTGGAGGCTGAAGGAAAGGGGCATCCGCCCATGG
AGGTCAAGGTGGGCTTCCAGCAACGGTGGCGAGAACGCTTTTTCCTGACC
TCGTATGTGTTGGACGCCGTAATCTGCGCAGCCTACGACCAAGTTCTCCT
GCCCCAGACACAAGGCAGTAAGCGACCTGTACTCCTTGTGCCTGGATGGT
GCGGTCGAACGCGGAGCTTTCGGAAGATGGCGGAACGGTTGGCGGCGGAG
GGGTACCCTGTTTATCCCGTGCCTTTGGGGTCGCAGCTTGGGTGCATTGA
TCGTAAGGCGAGCTTGCTAACCACGTTTTTAGACAGACACGGCTTGGAGG
ACGTGTATGTGGTGGCACATTCCATGGGGGGGCTGATAAGCGTGCGGAGT
ATGATGAAAGGAGAGACACGAATTAGACGGTTGATCACCATGGGGACGCC
TTTCCGCGGCACCCACGTCATCTACCTCGGGTACCTAGTCACGTTTGCCT
TGGTAATCGCCCTATCCTTCTGGCTGAGCCCCTTGGCAGGGACGATTTAT
TTGACGTTATTCATCCAGATCCCTTCTCTATGGCAGATGCAGCCCAGCTC
GGGTTTCCTCTCGGAGACACTCGAGTACCTCTCTCGTGTCGCGACGCCTG
TCCAGTGTGTCTATGCCGTCAGGGACCAGATTGTGATTCACAATTGGCGG
CAGGCCTGGAGTCCTACGCGGTTGGGGAGGACGGATGATTTGTGTTTACC
AGAGTATGGGCATATGAATTTGTTCATGGGTGCGTCCGGGATTGAGCTCG
TGGCACGGTTGCTGGCACACTATGAGGCCACTGCTGCTGCTACTGCTGCT
GCTGCTGCTCGGACTACTGCTCCGACTGAAGCCTCTGCTGTTCCTCTTTT
CTCGAAGAAAACAAATGAATGTAATCAGGAGGAGATTGGCGAGGAGGAGG
AGAAGGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAGAGGAGGAGCAGGAG
GAGGAGCAGGAGGGGGGGAGAGTGAATGCTCAGCAGCAGCGGCCGCAGCA
TTCGCTGGAAAAGCGATTGGAGGCGGCGAATGGTATGTGGGGAGGGAGGG
GGATCTTTGGGCATGCTACGGGAGCAGGGGGATCATTCCGTACCGGGAAA
AGAAGAATGATGGAGGATGAGTAAGGCGAAGGAGTGGGAGTAAGGAGGAA
GGCTTTGATGAAGATTTTTGTGTAAAATGGTCACAAAGAGTAGGGCAGAA
AGGGAGGGAGGGGGAAAAATATCCACACTCACGTCTCCAGAAGATTTCAT
CGTGTAATTGTTTCTGTGGACAAAGACGAAGGGGATAGAAAGACCAAGCC
AGATGAATGGAAGGAGAGAAGGAGGTATATATTTTTTATGGTTGCAAGAG
AGGCCAAGCTGAGGGTTTGCTGCTTGCTGGAGCTAGGAATGTGAGATCTG
GCTCTGGGCCAAATAATCACAACAATTTTGTGCTTGTACATGTGGAGGGG
TTGAAGTAGGGGGATGGGGTTTGGAATTAGGGGAAGAGGAGAGAGCAGGA
GCAGGACGAAGAGCAGTGGGCGCAAATGTGTGTTTGGCCTGCATGCTTTT
TAAATTATAAAAATGTATGATAGAACACGATTTTGCCACTTCTAACAAAT
GTTTATATTCTTGTATGGATGTTCAGATCGATCTACCTATTTTCCCTTCT
CCTCAGACCTCGTTGCCACGCCGCTATGTCGTGACTGCTCAAAAAAGGGA
AATGACGCCCTCGTATGGCACACTGATTCGTGGGTAGAATGAATGAAAAT
TGATGGGGAGGAAGACGAAGAGGGGGAAGGCAGTGAGGGGTAGATGGAGA
GAAGAATTCACGGCGGATTTTGACTGTGCGTACGCAGCTTCTCCTATCGA
CACTGATCGCAGCAACAAACAACGTAGATGCCGACCGAGACTGGCGTGGA
GATACTAGAAGGCGGGATAGTGAGAAATGGCAAAGAACAGGACGAAGCCT
GAAAGTTCAGTCCA

Coding sequence (CDS) from alignment at scaffold_11:543636..546299+

>mRNA_5772 ID=mRNA_5772|Name=jgi.p|Nanoce1779_2|630549|organism=Nannochloropsis oceanica|type=CDS|length=2604bp|location=Sequence derived from alignment at scaffold_11:543636..546299+ (Nannochloropsis oceanica)
ATGGCGCCCTTTTTGTACAGCCCGCCACGAAATCTGGTCCGGGCCGAGGA
ATTTGTCGTGGCGGCAGGAGTGCGGAGGAGCAGTCGCTTCACCTTGTGGC
GGACAGTGTCCGGGCGGATAGGAGGGGAACCTCGATCGATCGCGCGCACA
GGACGAATGGATAAGGAGGAGCATGCACAGGCAGAGAAGGAAGAAGGCGA
GAGGGCGGCCAAGGAAGAGGAGATACACCAAGAGAAGCTTCGATTGGCAG
AGCTGGAGGCTGAAGGAAAGGGGCATCCGCCCATGGAGGTCAAGGTGGGC
TTCCAGCAACGGTGGCGAGAACGCTTTTTCCTGACCTCGTATGTGTTGGA
CGCCGTAATCTGCGCAGCCTACGACCAAGTTCTCCTGCCCCAGACACAAG
GCAGTAAGCGACCTGTACTCCTTGTGCCTGGATGGTGCGGTCGAACGCGG
AGCTTTCGGAAGATGGCGGAACGGTTGGCGGCGGAGGGGTACCCTGTTTA
TCCCGTGCCTTTGGGGTCGCAGCTTGGGTGCATTGATCGTAAGGCGAGCT
TGCTAACCACGTTTTTAGACAGACACGGCTTGGAGGACGTGTATGTGGTG
GCACATTCCATGGGGGGGCTGATAAGCGTGCGGAGTATGATGAAAGGAGA
GACACGAATTAGACGGTTGATCACCATGGGGACGCCTTTCCGCGGCACCC
ACGTCATCTACCTCGGGTACCTAGTCACGTTTGCCTTGGTAATCGCCCTA
TCCTTCTGGCTGAGCCCCTTGGCAGGGACGATTTATTTGACGTTATTCAT
CCAGATCCCTTCTCTATGGCAGATGCAGCCCAGCTCGGGTTTCCTCTCGG
AGACACTCGAGTACCTCTCTCGTGTCGCGACGCCTGTCCAGTGTGTCTAT
GCCGTCAGGGACCAGATTGTGATTCACAATTGGCGGCAGGCCTGGAGTCC
TACGCGGTTGGGGAGGACGGATGATTTGTGTTTACCAGAGTATGGGCATA
TGAATTTGTTCATGGGTGCGTCCGGGATTGAGCTCAAAACAAATGAATGT
AATCAGGAGGAGATTGGCGAGGAGGAGGAGAAGGAGGAGGAGGAAGAGGA
GGAAGAGGAGGAAGAGGAGGAGCAGGAGGAGGAGCAGGAGGGGGGGAGAG
TGAATGCTCAGCAGCAGCGGCCGCAGCATTCGCTGGAAAAGCGATTGGAG
GCGGCGAATGGTATGTGGGGAGGGAGGGGGATCTTTGGGCATGCTACGGG
AGCAGGGGGATCATTCCGTACCGGGAAAAGAAGAATGATGGAGGATGAGT
AAATGGCGCCCTTTTTGTACAGCCCGCCACGAAATCTGGTCCGGGCCGAG
GAATTTGTCGTGGCGGCAGGAGTGCGGAGGAGCAGTCGCTTCACCTTGTG
GCGGACAGTGTCCGGGCGGATAGGAGGGGAACCTCGATCGATCGCGCGCA
CAGGACGAATGGATAAGGAGGAGCATGCACAGGCAGAGAAGGAAGAAGGC
GAGAGGGCGGCCAAGGAAGAGGAGATACACCAAGAGAAGCTTCGATTGGC
AGAGCTGGAGGCTGAAGGAAAGGGGCATCCGCCCATGGAGGTCAAGGTGG
GCTTCCAGCAACGGTGGCGAGAACGCTTTTTCCTGACCTCGTATGTGTTG
GACGCCGTAATCTGCGCAGCCTACGACCAAGTTCTCCTGCCCCAGACACA
AGGCAGTAAGCGACCTGTACTCCTTGTGCCTGGATGGTGCGGTCGAACGC
GGAGCTTTCGGAAGATGGCGGAACGGTTGGCGGCGGAGGGGTACCCTGTT
TATCCCGTGCCTTTGGGGTCGCAGCTTGGGTGCATTGATCGTAAGGCGAG
CTTGCTAACCACGTTTTTAGACAGACACGGCTTGGAGGACGTGTATGTGG
TGGCACATTCCATGGGGGGGCTGATAAGCGTGCGGAGTATGATGAAAGGA
GAGACACGAATTAGACGGTTGATCACCATGGGGACGCCTTTCCGCGGCAC
CCACGTCATCTACCTCGGGTACCTAGTCACGTTTGCCTTGGTAATCGCCC
TATCCTTCTGGCTGAGCCCCTTGGCAGGGACGATTTATTTGACGTTATTC
ATCCAGATCCCTTCTCTATGGCAGATGCAGCCCAGCTCGGGTTTCCTCTC
GGAGACACTCGAGTACCTCTCTCGTGTCGCGACGCCTGTCCAGTGTGTCT
ATGCCGTCAGGGACCAGATTGTGATTCACAATTGGCGGCAGGCCTGGAGT
CCTACGCGGTTGGGGAGGACGGATGATTTGTGTTTACCAGAGTATGGGCA
TATGAATTTGTTCATGGGTGCGTCCGGGATTGAGCTCAAAACAAATGAAT
GTAATCAGGAGGAGATTGGCGAGGAGGAGGAGAAGGAGGAGGAGGAAGAG
GAGGAAGAGGAGGAAGAGGAGGAGCAGGAGGAGGAGCAGGAGGGGGGGAG
AGTGAATGCTCAGCAGCAGCGGCCGCAGCATTCGCTGGAAAAGCGATTGG
AGGCGGCGAATGGTATGTGGGGAGGGAGGGGGATCTTTGGGCATGCTACG
GGAGCAGGGGGATCATTCCGTACCGGGAAAAGAAGAATGATGGAGGATGA
GTAA

Synonyms

Publications