jgi.p|Nanoce1779_2|590258, mRNA_5771 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590258
Unique Name	mRNA_5771
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2239
Alignment location	scaffold_11:540467..543057 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590344
Track	FilteredModels2
ProteinId	590258

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:540467..543057 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590258	gene_5771	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590258	mRNA_5771-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5771	CDS_5771	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:540467..543057+
coding sequence from alignment at scaffold_11:540467..543057+

mRNA sequence

>mRNA_5771 ID=mRNA_5771|Name=jgi.p|Nanoce1779_2|590258|organism=Nannochloropsis oceanica|type=mRNA|length=2239bp
CGGCCCGGGACTCGACATGAAAAAGCGTATGTGCCGCCTCCGTTGCGTGG
CATTTCTTTTCGCCCACTGCTTCCCTCGAACCAGTAAAGACGAAGCTGCA
TAGTCACCGAAGAAGCACGTCATGTAGTCCAGCCGCAAGACGAGAGAGGC
CGCGGCCCCATCCGACGTTTCCGGTCTTATGGAGCACCAGCCGTGGGCTG
AAGAGGGAGTCCCCGTGCTACTATGCATCTTTTTTCAATTGGTAACCGTT
GTTTCCTTATCTTGCACGTCTATTTGTAAAAAAAGGCACCACGCTCTTAC
CTGACTTAAAATATAATGCTCACGAAAAAGCGCCAGAGGGCAAACAAAGA
CACCCCTATACTATATGATTGTTACTTGTTCTCATCACCTGTCTTACATC
GCACACACTCACATTAAGACCTCCAGCGCTGCGGCTGGTGTAGAAGTGGC
CCGGTGCAGCTCGCGCGACATCCTCGGATTCCAAGCCCTACCTTACAGAA
CGCCCCATCCGACTTTTCCGGTCTTATGGATCACCAGCCGCGGGCTAAAG
AGGGCGTCCCCATGCTACTAGGCATCGCCTTGGTGGTGGATGATGCCAAC
AAAGGTCAGCGGCTCGTATTCCGGTACCCAGCTCTGCGGGAATATGGGCT
TCGGCATGGCAAATCAGGGGGGCTTGTGATGAGCTGGGCACTCCAGCGGT
GCGCAGCTGAATTTCACCAGTTGACCCCCGAGGTTTTTGCACGACTCTTC
CGGCCAAAGGCTCCCTTGTGCGGTCGGCCTTTCCGGGTGTGCATTGATCG
CGTGCACTACTTGAGTTATCCTGTGCTTACGGCCAGCGCCACCAAGGAGA
CGGCGACGGACGACGTCCTCCTGTTTAATATCATCCTCGCCATCGCCCGC
CTGCCGCCCACCGCTCAGCATTCAAACCAACCACAGCCCCAGGAATCATC
GTCAGCAATCGCTGTGGCAGCTGCACTCAGGCGATTGTTGGTTTGGCGCC
GCGTGGGCCAGAAAGCGACAGCGGCGCATTGGATGAAAGAGGATGACAGG
GGCGACAAAGAAAGGCAGCTGCAGCACTTGGAAAATGTATTGGAGCTTCT
GACCAAGGCTTTGTTGCATGAAGAGCGTCGCTGTCGATATGTGAGCAAAG
AGGTCCGGAGGCTGTTGGATATTGGAGAGGATGCACAGGGGGGGGAGGGC
CTTGGCACGGCGGAGGACGCCCAGACGATGCTTGACACGATGATGGAGGA
AAGCGCTCTGGCAAGTGATCTAAAAGAGGCCTTTCATGGGCTTGAGGACG
GTGGGGGACTTGATGTTGCCGTAAATGGTTGGATCCGCCTTAGCTTGCCG
GGGTGGCTGCCCACCCGGCGAGGCAGAGGAGGCCAGGAGAAGGAGGACGA
GGACAAGGAGGAGGACGAGGAGGAGGACGAGCTGGTCTTGGTGGATGCGA
GGCCGGAGCGTGTTCAGCCCGACCATACCCTGCTTCTGCTAATGAGTGAG
GAGACTATTCTGGCGAAGCTACCTAAGGACGGGTCAGAGCAGCTGGCTAT
GTTTGTGCAAGCTGCCAACCCACTAAAGACGCTGAAGGAGATCTCGGCAG
CGACCCGCATTGCCCTACCACAACTGCGCCTGTTGACGGCCCACCTCGTG
CATTGGCGACTTGCACGTGTCATTCGTACCATTTCATTGCAAAGTATTTA
TGCGATCAAACCCACGGCGCCGACGCAGGTGTTTTCCATGCATGCCATGG
CATTTGAGCAGCGTTTCCCCATCTCCTCCTTTTTTAGCGTGCTCGGCTCG
TTCGGGGCGGGTAAGAGTCTGCAAGGTCTCCTGGAAGGCTTAACTGAGGA
CGGCCAAGTCGAGCGCCTGGCGCAACTGGTGTGGCTCCTACAGCAGGATA
TTGTACATGAGATTGAGCTTTTTGAGGGACAGGGGCTGGAAAAGATGTGA
TGAGCATGGGAAAGAAGTTGTGACGCTCTCATCGATTATCAACATGGTGG
GCGGCGTGTACTATACATGAACGTGTACAGAAGATTCGAATCAAGAGATG
AGAAGAAATGAAACGAAAGCGCAGGCATTTGCATGATGCGTAGGAATTGA
TTTACGTATCCTTTTCATTGTATGATTTCTACACGTCTGGAGAGTGGATG
AATATTCGACCATGTAATGTAAAAAATGCTACACGGCGAGAGTCGACGAC
TCCGATAATATGGAATGAAAACAAAGACCATTTTGGTCT

protein sequence of jgi.p|Nanoce1779_2|590258

>mRNA_5771-protein ID=mRNA_5771-protein|Name=jgi.p|Nanoce1779_2|590258|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MDHQPRAKEGVPMLLGIALVVDDANKGQRLVFRYPALREYGLRHGKSGGL
VMSWALQRCAAEFHQLTPEVFARLFRPKAPLCGRPFRVCIDRVHYLSYPV
LTASATKETATDDVLLFNIILAIARLPPTAQHSNQPQPQESSSAIAVAAA
LRRLLVWRRVGQKATAAHWMKEDDRGDKERQLQHLENVLELLTKALLHEE
RRCRYVSKEVRRLLDIGEDAQGGEGLGTAEDAQTMLDTMMEESALASDLK
EAFHGLEDGGGLDVAVNGWIRLSLPGWLPTRRGRGGQEKEDEDKEEDEEE
DELVLVDARPERVQPDHTLLLLMSEETILAKLPKDGSEQLAMFVQAANPL
KTLKEISAATRIALPQLRLLTAHLVHWRLARVIRTISLQSIYAIKPTAPT
QVFSMHAMAFEQRFPISSFFSVLGSFGAGKSLQGLLEGLTEDGQVERLAQ
LVWLLQQDIVHEIELFEGQGLEKM*

mRNA from alignment at scaffold_11:540467..543057+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5771 ID=mRNA_5771|Name=jgi.p|Nanoce1779_2|590258|organism=Nannochloropsis oceanica|type=mRNA|length=2591bp|location=Sequence derived from alignment at scaffold_11:540467..543057+ (Nannochloropsis oceanica)
CGGCCCGGGACTCGACATGAAAAAGCGTATGTGCCGCCTCCGTTGCGTGG
CATTTCTTTTCGCCCACTGCTTCCCTCGAACCAGTAAAGACGAAGCTGCA
TAGTCACCGAAGAAGCACGTCATGTAGTCCAGCCGCAAGACGAGAGAGGC
CGCGGCCCCATCCGACGTTTCCGGTCTTATGGAGCACCAGCCGTGGGCTG
AAGAGGGAGTCCCCGTGCTACTATGCATCTTTTTTCAATTGGTAACCGTT
GTTTCCTTATCTTGCACGTCTATTTGTAAAAAAAGGCACCACGCTCTTAC
CTGACTTAAAATATAATGCTCACGAAAAAGCGCCAGAGGGCAAACAAAGA
CACCCCTATACTATATGATTGTTACTTGTTCTCATCACCTGTCTTACATC
GCACACACTCACATTAAGACCTCCAGCGCTGCGGCTGGTGTAGAAGTGGC
CCGGTGCAGCTCGCGCGACATCCTCGGATTCCAAGCCCTACCTTACAGAA
CGCCCCATCCGACTTTTCCGGTCTTATGGATCACCAGCCGCGGGCTAAAG
AGGGCGTCCCCATGCTACTAGGCATCGCCTTGGTGGTGGATGATGCCAAC
AAAGGTCAGCGGCTCGTATTCCGGTACCCAGCTCTGCGGGAATATGGGCT
TCGGCATGGCAAATCAGGGGGGCTTGTGATGAGCTGGGCACTCCAGCGGT
GCGCAGCTGAATTTCACCAGTTGACCCCCGAGGTTTTTGCACGACTCTTC
CGGCCAAAGGCTCCCTTGTGCGGTCGGCCTTTCCGGGTGTGCATTGATCG
CGTGCACTACTTGAGTTATCCTGTGCTTACGGCCAGCGCCACCAAGGAGA
CGGCGACGGACGACGTCCTCCTGTTTAATATCATCCTCGCCATCGCCCGC
CTGCCGCCCACCGCTCAGCATTCAAACCAACCACAGCCCCAGGAATCATC
GTCAGCAATCGCTGTGGCAGCTGCACTCAGGCGATTGTTGGTTTGGCGCC
GCGTGGGCCAGAAAGCGACAGCGGCGCATTGGATGAAAGAGGATGACAGG
GGCGACAAAGAAAGGCAGCTGCAGCACTTGGAAAATGTATTGGAGCTTCT
GACCAAGGCTTTGTTGCATGAAGAGCGTCGCTGTCGATATGTGAGCAAAG
AGGTCCGGAGGCTGTTGGATATTGGAGAGGATGCACAGGGGGGGGAGGGC
CTTGGCACGGCGGAGGACGCCCAGACGATGCTTGACACGATGATGGAGGA
AAGCGCTCTGGCAAGTGATCTAAAAGAGGCCTTTCATGGGCTTGAGGACG
GTGGGGGACTTGATGTTGCCGTAAATGGTTGGATCCGCCTTAGCTTGCCG
GGGTGGCTGCCCACCCGGCGAGGCAGAGGAGGCCAGGAGAAGGAGGACGA
GGACAAGGAGGAGGACGAGGAGGAGGACGAGCTGGTCTTGGTGGATGCGA
GGCCGGAGCGTGTTCAGCCCGACCATACCCTGCTTCTGCTAATGAGTGAG
GAGACTATTCTGGCGAAGCTACCTAAGGACGGGTCAGAGCAGCTGGCTAT
GTTTGTGCAAGCTGCCAACCCACTAAAGACGCTGAAGGAGATCTCGGCAG
CGACCCGCATTGCCCTACCACAACTGCGCCTGTTGACGGCCCACCTCGTG
CATTGGCGACTTGCACGTGTCATTCGTACCATTTCATTGCAAAGTATTTA
TGCGGTGAGTGGGTGGTTTGAGTGTTGACGGCCATGAGTGTGTGGATCGA
CGGGAATCGTCTTGTGATGCCTATGTGGCCTCACAAAAAAATAACACAAC
AATTTCCTACCACAGTAGAGTCAGTAAATGAGCAATACGCTAATTTCAAA
GCTAACCCTCAGAACGACCTTCACGCTCTCTCTATTTCCTTGTCCACTGC
TCAATGTGCAATAGATCAAACCCACGGCGCCGACGCAGGTGTTTTCCATG
CATGCCATGGCATTTGAGCAGCGTTTCCCCATCTCCTCCTTTTTTAGCGT
GCTCGGCTCGTTCGGGGCGGGTAAGAGTCTGCAAGGTCTCCTGGAAGGCT
TAACTGAGGTAAAAAGAGGCCGCGGGATGATGGTTTGAAAAGGAGAAGGC
GATGTGCCATGACTTAGTCGGCTGGAATATGGAAGGAGGGTAGCATTCTA
TAGCTATCCGCTGCTTTTAATCACACTCCAATTATTGTCCTACCGTCCAG
GACGGCCAAGTCGAGCGCCTGGCGCAACTGGTGTGGCTCCTACAGCAGGA
TATTGTACATGAGATTGAGCTTTTTGAGGGACAGGGGCTGGAAAAGATGT
GATGAGCATGGGAAAGAAGTTGTGACGCTCTCATCGATTATCAACATGGT
GGGCGGCGTGTACTATACATGAACGTGTACAGAAGATTCGAATCAAGAGA
TGAGAAGAAATGAAACGAAAGCGCAGGCATTTGCATGATGCGTAGGAATT
GATTTACGTATCCTTTTCATTGTATGATTTCTACACGTCTGGAGAGTGGA
TGAATATTCGACCATGTAATGTAAAAAATGCTACACGGCGAGAGTCGACG
ACTCCGATAATATGGAATGAAAACAAAGACCATTTTGGTCT

Coding sequence (CDS) from alignment at scaffold_11:540467..543057+

>mRNA_5771 ID=mRNA_5771|Name=jgi.p|Nanoce1779_2|590258|organism=Nannochloropsis oceanica|type=CDS|length=4275bp|location=Sequence derived from alignment at scaffold_11:540467..543057+ (Nannochloropsis oceanica)
ATGGATCACCAGCCGCGGGCTAAAGAGGGCGTCCCCATGCTACTAGGCAT
CGCCTTGGTGGTGGATGATGCCAACAAAGGTCAGCGGCTCGTATTCCGGT
ACCCAGCTCTGCGGGAATATGGGCTTCGGCATGGCAAATCAGGGGGGCTT
GTGATGAGCTGGGCACTCCAGCGGTGCGCAGCTGAATTTCACCAGTTGAC
CCCCGAGGTTTTTGCACGACTCTTCCGGCCAAAGGCTCCCTTGTGCGGTC
GGCCTTTCCGGGTGTGCATTGATCGCGTGCACTACTTGAGTTATCCTGTG
CTTACGGCCAGCGCCACCAAGGAGACGGCGACGGACGACGTCCTCCTGTT
TAATATCATCCTCGCCATCGCCCGCCTGCCGCCCACCGCTCAGCATTCAA
ACCAACCACAGCCCCAGGAATCATCGTCAGCAATCGCTGTGGCAGCTGCA
CTCAGGCGATTGTTGGTTTGGCGCCGCGTGGGCCAGAAAGCGACAGCGGC
GCATTGGATGAAAGAGGATGACAGGGGCGACAAAGAAAGGCAGCTGCAGC
ACTTGGAAAATGTATTGGAGCTTCTGACCAAGGCTTTGTTGCATGAAGAG
CGTCGCTGTCGATATGTGAGCAAAGAGGTCCGGAGGCTGTTGGATATTGG
AGAGGATGCACAGGGGGGGGAGGGCCTTGGCACGGCGGAGGACGCCCAGA
CGATGCTTGACACGATGATGGAGGAAAGCGCTCTGGCAAGTGATCTAAAA
GAGGCCTTTCATGGGCTTGAGGACGGTGGGGGACTTGATGTTGCCGTAAA
TGGTTGGATCCGCCTTAGCTTGCCGGGGTGGCTGCCCACCCGGCGAGGCA
GAGGAGGCCAGGAGAAGGAGGACGAGGACAAGGAGGAGGACGAGGAGGAG
GACGAGCTGGTCTTGGTGGATGCGAGGCCGGAGCGTGTTCAGCCCGACCA
TACCCTGCTTCTGCTAATGAGTGAGGAGACTATTCTGGCGAAGCTACCTA
AGGACGGGTCAGAGCAGCTGGCTATGTTTGTGCAAGCTGCCAACCCACTA
AAGACGCTGAAGGAGATCTCGGCAGCGACCCGCATTGCCCTACCACAACT
GCGCCTGTTGACGGCCCACCTCGTGCATTGGCGACTTGCACGTGTCATTC
GTACCATTTCATTGCAAAGTATTTATGCGATCAAACCCACGGCGCCGACG
CAGGTGTTTTCCATGCATGCCATGGCATTTGAGCAGCGTTTCCCCATCTC
CTCCTTTTTTAGCGTGCTCGGCTCGTTCGGGGCGGGTAAGAGTCTGCAAG
GTCTCCTGGAAGGCTTAACTGAGGACGGCCAAGTCGAGCGCCTGGCGCAA
CTGGTGTGGCTCCTACAGCAGGATATTGTACATGAGATTGAGCTTTTTGA
GGGACAGGGGCTGGAAAAGATGTGAATGGATCACCAGCCGCGGGCTAAAG
AGGGCGTCCCCATGCTACTAGGCATCGCCTTGGTGGTGGATGATGCCAAC
AAAGGTCAGCGGCTCGTATTCCGGTACCCAGCTCTGCGGGAATATGGGCT
TCGGCATGGCAAATCAGGGGGGCTTGTGATGAGCTGGGCACTCCAGCGGT
GCGCAGCTGAATTTCACCAGTTGACCCCCGAGGTTTTTGCACGACTCTTC
CGGCCAAAGGCTCCCTTGTGCGGTCGGCCTTTCCGGGTGTGCATTGATCG
CGTGCACTACTTGAGTTATCCTGTGCTTACGGCCAGCGCCACCAAGGAGA
CGGCGACGGACGACGTCCTCCTGTTTAATATCATCCTCGCCATCGCCCGC
CTGCCGCCCACCGCTCAGCATTCAAACCAACCACAGCCCCAGGAATCATC
GTCAGCAATCGCTGTGGCAGCTGCACTCAGGCGATTGTTGGTTTGGCGCC
GCGTGGGCCAGAAAGCGACAGCGGCGCATTGGATGAAAGAGGATGACAGG
GGCGACAAAGAAAGGCAGCTGCAGCACTTGGAAAATGTATTGGAGCTTCT
GACCAAGGCTTTGTTGCATGAAGAGCGTCGCTGTCGATATGTGAGCAAAG
AGGTCCGGAGGCTGTTGGATATTGGAGAGGATGCACAGGGGGGGGAGGGC
CTTGGCACGGCGGAGGACGCCCAGACGATGCTTGACACGATGATGGAGGA
AAGCGCTCTGGCAAGTGATCTAAAAGAGGCCTTTCATGGGCTTGAGGACG
GTGGGGGACTTGATGTTGCCGTAAATGGTTGGATCCGCCTTAGCTTGCCG
GGGTGGCTGCCCACCCGGCGAGGCAGAGGAGGCCAGGAGAAGGAGGACGA
GGACAAGGAGGAGGACGAGGAGGAGGACGAGCTGGTCTTGGTGGATGCGA
GGCCGGAGCGTGTTCAGCCCGACCATACCCTGCTTCTGCTAATGAGTGAG
GAGACTATTCTGGCGAAGCTACCTAAGGACGGGTCAGAGCAGCTGGCTAT
GTTTGTGCAAGCTGCCAACCCACTAAAGACGCTGAAGGAGATCTCGGCAG
CGACCCGCATTGCCCTACCACAACTGCGCCTGTTGACGGCCCACCTCGTG
CATTGGCGACTTGCACGTGTCATTCGTACCATTTCATTGCAAAGTATTTA
TGCGATCAAACCCACGGCGCCGACGCAGGTGTTTTCCATGCATGCCATGG
CATTTGAGCAGCGTTTCCCCATCTCCTCCTTTTTTAGCGTGCTCGGCTCG
TTCGGGGCGGGTAAGAGTCTGCAAGGTCTCCTGGAAGGCTTAACTGAGGA
CGGCCAAGTCGAGCGCCTGGCGCAACTGGTGTGGCTCCTACAGCAGGATA
TTGTACATGAGATTGAGCTTTTTGAGGGACAGGGGCTGGAAAAGATGTGA
ATGGATCACCAGCCGCGGGCTAAAGAGGGCGTCCCCATGCTACTAGGCAT
CGCCTTGGTGGTGGATGATGCCAACAAAGGTCAGCGGCTCGTATTCCGGT
ACCCAGCTCTGCGGGAATATGGGCTTCGGCATGGCAAATCAGGGGGGCTT
GTGATGAGCTGGGCACTCCAGCGGTGCGCAGCTGAATTTCACCAGTTGAC
CCCCGAGGTTTTTGCACGACTCTTCCGGCCAAAGGCTCCCTTGTGCGGTC
GGCCTTTCCGGGTGTGCATTGATCGCGTGCACTACTTGAGTTATCCTGTG
CTTACGGCCAGCGCCACCAAGGAGACGGCGACGGACGACGTCCTCCTGTT
TAATATCATCCTCGCCATCGCCCGCCTGCCGCCCACCGCTCAGCATTCAA
ACCAACCACAGCCCCAGGAATCATCGTCAGCAATCGCTGTGGCAGCTGCA
CTCAGGCGATTGTTGGTTTGGCGCCGCGTGGGCCAGAAAGCGACAGCGGC
GCATTGGATGAAAGAGGATGACAGGGGCGACAAAGAAAGGCAGCTGCAGC
ACTTGGAAAATGTATTGGAGCTTCTGACCAAGGCTTTGTTGCATGAAGAG
CGTCGCTGTCGATATGTGAGCAAAGAGGTCCGGAGGCTGTTGGATATTGG
AGAGGATGCACAGGGGGGGGAGGGCCTTGGCACGGCGGAGGACGCCCAGA
CGATGCTTGACACGATGATGGAGGAAAGCGCTCTGGCAAGTGATCTAAAA
GAGGCCTTTCATGGGCTTGAGGACGGTGGGGGACTTGATGTTGCCGTAAA
TGGTTGGATCCGCCTTAGCTTGCCGGGGTGGCTGCCCACCCGGCGAGGCA
GAGGAGGCCAGGAGAAGGAGGACGAGGACAAGGAGGAGGACGAGGAGGAG
GACGAGCTGGTCTTGGTGGATGCGAGGCCGGAGCGTGTTCAGCCCGACCA
TACCCTGCTTCTGCTAATGAGTGAGGAGACTATTCTGGCGAAGCTACCTA
AGGACGGGTCAGAGCAGCTGGCTATGTTTGTGCAAGCTGCCAACCCACTA
AAGACGCTGAAGGAGATCTCGGCAGCGACCCGCATTGCCCTACCACAACT
GCGCCTGTTGACGGCCCACCTCGTGCATTGGCGACTTGCACGTGTCATTC
GTACCATTTCATTGCAAAGTATTTATGCGATCAAACCCACGGCGCCGACG
CAGGTGTTTTCCATGCATGCCATGGCATTTGAGCAGCGTTTCCCCATCTC
CTCCTTTTTTAGCGTGCTCGGCTCGTTCGGGGCGGGTAAGAGTCTGCAAG
GTCTCCTGGAAGGCTTAACTGAGGACGGCCAAGTCGAGCGCCTGGCGCAA
CTGGTGTGGCTCCTACAGCAGGATATTGTACATGAGATTGAGCTTTTTGA
GGGACAGGGGCTGGAAAAGATGTGA

Synonyms

Publications