jgi.p|Nanoce1779_2|528581, mRNA_5770 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|528581
Unique Name	mRNA_5770
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1359
Alignment location	scaffold_11:538730..540175 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	528667
Track	FilteredModels2
ProteinId	528581

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:538730..540175 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|528581	gene_5770	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|528581	mRNA_5770-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5770	CDS_5770	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:538730..540175+
coding sequence from alignment at scaffold_11:538730..540175+

mRNA sequence

>mRNA_5770 ID=mRNA_5770|Name=jgi.p|Nanoce1779_2|528581|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp
ATGCAAAACTGCTTCGGGCTGACGATCCTCCACGCTTACATCAATCTCCC
TTTTATCGTCATGAAAGAAGAGGGGCTCCGTCGACAGATGGAACAGACGA
GACGGGAGCTGGGCGAGGCGACGCGAGAGGTGGAAGATGCCATGACGCGT
GAATCCTGGGGGGCATATATAGCCACTTTTGGGAAGAAGGAAAAGGAGGG
CGGAGCGCCAATAAAGGCGCCGATGCTCATCACACGCTCCATTGGCGGTG
GTGGCGTGGAAGAGCACAAGACTTCCCCTTTCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCTT
TTCAGCCATCACCACCACCGACAACAATACCACGTCCTTTCCCAGGACAG
CCAAGCATCAAAATATACTTCGAGGAGGTCCCGCATCGACGTCTGCACGG
CCACAGCAGCGGCAGCAGCAGCAGCCGCCAATACCACTGGCGGACGTGGA
CGACTTCAAATTTCAACCTAACGAGCAGAGTGAGCTTGACCTCTTTCTAG
CCGACGGGGAGGGAACCGAGGAAGAGGGTGCACTAGACGAGGAGCAAAAA
GAGGCGGAGGGACGACGGTTGAGCTTGACGTCTTGCTTGAAGCCGGGTTC
GCTTGGGTCGCTCAGCAAAGCGGAGCGCCGCGCAGCTGGCATAGCGGTGG
GCAATGGTGCAGGATATGGGAGCGACGGTGAGGACGAGGAGGAGGAAGTC
GAAGGGCAGGATGCGGTCGTGGCTGAAATCGGGGAACAACGCTATGTAGG
CCTAAGGCCTGTGACACTCTCATCCCAATCTTTGTCTCCTTCGACCAGCG
TCCCAGAGCAAGTCAATATGTTGTCCAGTGCTACAGGGAGAAGGGGGAAG
AAGGACGAGGAGAATGCAGAGAAGGAGCCTAAAGAAGACGATGAGTTTGA
TGTGCCGGCAGGCCTTCCAAATAATTCTTTTGTGGGCGATCTGTCTTGGG
ACGAGGAGGAGGAGGAATGCGGCATAGGTGTCATGGGCATGGGTTGTAGT
ACCAACAGGAGCAGCAAGACACCCTTGAATTCTTCCGCCACTGCTGGAAC
TGATGCTTCATTGACTTCTGCAACCACCTCCAAGACCAACGTTGTGTTGA
GTGAGGCGGCACGGGCTGCCATCGCTGCAACCATGCAAGAATTGGGAGAG
GTAGTGCGGCCAGGAGGTGAAGAGGTCGGGGAGGCAATCGAGGGGGGGGA
GCGGCGAAAACACCGGCATCAAGACAAAAGCAAGTCAGAAGGCTCGTCAT
CGTCACATCGTAAGCACAAAAAGAAAAGCAGTGGCGGCCGGCTGGCAGAT
AAGTTGTAG

protein sequence of jgi.p|Nanoce1779_2|528581

>mRNA_5770-protein ID=mRNA_5770-protein|Name=jgi.p|Nanoce1779_2|528581|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MQNCFGLTILHAYINLPFIVMKEEGLRRQMEQTRRELGEATREVEDAMTR
ESWGAYIATFGKKEKEGGAPIKAPMLITRSIGGGGVEEHKTSPFSSSSSS
SSSSSSSSSSSPSSSSFSAITTTDNNTTSFPRTAKHQNILRGGPASTSAR
PQQRQQQQPPIPLADVDDFKFQPNEQSELDLFLADGEGTEEEGALDEEQK
EAEGRRLSLTSCLKPGSLGSLSKAERRAAGIAVGNGAGYGSDGEDEEEEV
EGQDAVVAEIGEQRYVGLRPVTLSSQSLSPSTSVPEQVNMLSSATGRRGK
KDEENAEKEPKEDDEFDVPAGLPNNSFVGDLSWDEEEEECGIGVMGMGCS
TNRSSKTPLNSSATAGTDASLTSATTSKTNVVLSEAARAAIAATMQELGE
VVRPGGEEVGEAIEGGERRKHRHQDKSKSEGSSSSHRKHKKKSSGGRLAD
KL*

mRNA from alignment at scaffold_11:538730..540175+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5770 ID=mRNA_5770|Name=jgi.p|Nanoce1779_2|528581|organism=Nannochloropsis oceanica|type=mRNA|length=1446bp|location=Sequence derived from alignment at scaffold_11:538730..540175+ (Nannochloropsis oceanica)
ATGCAAAACTGCTTCGGGCTGACGATCCTCCACGCTTACATCAATCTCCC
TTTTATCGTCATGAAAGAAGAGGGGCTCCGTCGACAGATGGAACAGACGA
GACGGGAGCTGGGCGAGGCGACGCGAGAGGTGGAAGATGCCATGACGCGT
GAATCCTGGGGGGCATATATAGCCACTTTTGGGAAGAAGGAAAAGGAGGG
CGGAGTTGGGCAGGGGAAGAGGCAGCAGCAGCACTACCACCACCATCAGC
ATGATAAAGAAGAAAGACAAGCAAAGCTGCAGGTTGCCAAGGCGCCAATA
AAGGCGCCGATGCTCATCACACGCTCCATTGGCGGTGGTGGCGTGGAAGA
GCACAAGACTTCCCCTTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCT
CCTCCTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCTTTTCAGCCATCACC
ACCACCGACAACAATACCACGTCCTTTCCCAGGACAGCCAAGCATCAAAA
TATACTTCGAGGAGGTCCCGCATCGACGTCTGCACGGCCACAGCAGCGGC
AGCAGCAGCAGCCGCCAATACCACTGGCGGACGTGGACGACTTCAAATTT
CAACCTAACGAGCAGAGTGAGCTTGACCTCTTTCTAGCCGACGGGGAGGG
AACCGAGGAAGAGGGTGCACTAGACGAGGAGCAAAAAGAGGCGGAGGGAC
GACGGTTGAGCTTGACGTCTTGCTTGAAGCCGGGTTCGCTTGGGTCGCTC
AGCAAAGCGGAGCGCCGCGCAGCTGGCATAGCGGTGGGCAATGGTGCAGG
ATATGGGAGCGACGGTGAGGACGAGGAGGAGGAAGTCGAAGGGCAGGATG
CGGTCGTGGCTGAAATCGGGGAACAACGCTATGTAGGCCTAAGGCCTGTG
ACACTCTCATCCCAATCTTTGTCTCCTTCGACCAGCGTCCCAGAGCAAGT
CAATATGTTGTCCAGTGCTACAGGGAGAAGGGGGAAGAAGGACGAGGAGA
ATGCAGAGAAGGAGCCTAAAGAAGACGATGAGTTTGATGTGCCGGCAGGC
CTTCCAAATAATTCTTTTGTGGGCGATCTGTCTTGGGACGAGGAGGAGGA
GGAATGCGGCATAGGTGTCATGGGCATGGGTTGTAGTACCAACAGGAGCA
GCAAGACACCCTTGAATTCTTCCGCCACTGCTGGAACTGATGCTTCATTG
ACTTCTGCAACCACCTCCAAGACCAACGTTGTGTTGAGTGAGGCGGCACG
GGCTGCCATCGCTGCAACCATGCAAGAATTGGGAGAGGTAGTGCGGCCAG
GAGGTGAAGAGGTCGGGGAGGCAATCGAGGGGGGGGAGCGGCGAAAACAC
CGGCATCAAGACAAAAGCAAGTCAGAAGGCTCGTCATCGTCACATCGTAA
GCACAAAAAGAAAAGCAGTGGCGGCCGGCTGGCAGATAAGTTGTAG

Coding sequence (CDS) from alignment at scaffold_11:538730..540175+

>mRNA_5770 ID=mRNA_5770|Name=jgi.p|Nanoce1779_2|528581|organism=Nannochloropsis oceanica|type=CDS|length=2718bp|location=Sequence derived from alignment at scaffold_11:538730..540175+ (Nannochloropsis oceanica)
ATGCAAAACTGCTTCGGGCTGACGATCCTCCACGCTTACATCAATCTCCC
TTTTATCGTCATGAAAGAAGAGGGGCTCCGTCGACAGATGGAACAGACGA
GACGGGAGCTGGGCGAGGCGACGCGAGAGGTGGAAGATGCCATGACGCGT
GAATCCTGGGGGGCATATATAGCCACTTTTGGGAAGAAGGAAAAGGAGGG
CGGAGCGCCAATAAAGGCGCCGATGCTCATCACACGCTCCATTGGCGGTG
GTGGCGTGGAAGAGCACAAGACTTCCCCTTTCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCTT
TTCAGCCATCACCACCACCGACAACAATACCACGTCCTTTCCCAGGACAG
CCAAGCATCAAAATATACTTCGAGGAGGTCCCGCATCGACGTCTGCACGG
CCACAGCAGCGGCAGCAGCAGCAGCCGCCAATACCACTGGCGGACGTGGA
CGACTTCAAATTTCAACCTAACGAGCAGAGTGAGCTTGACCTCTTTCTAG
CCGACGGGGAGGGAACCGAGGAAGAGGGTGCACTAGACGAGGAGCAAAAA
GAGGCGGAGGGACGACGGTTGAGCTTGACGTCTTGCTTGAAGCCGGGTTC
GCTTGGGTCGCTCAGCAAAGCGGAGCGCCGCGCAGCTGGCATAGCGGTGG
GCAATGGTGCAGGATATGGGAGCGACGGTGAGGACGAGGAGGAGGAAGTC
GAAGGGCAGGATGCGGTCGTGGCTGAAATCGGGGAACAACGCTATGTAGG
CCTAAGGCCTGTGACACTCTCATCCCAATCTTTGTCTCCTTCGACCAGCG
TCCCAGAGCAAGTCAATATGTTGTCCAGTGCTACAGGGAGAAGGGGGAAG
AAGGACGAGGAGAATGCAGAGAAGGAGCCTAAAGAAGACGATGAGTTTGA
TGTGCCGGCAGGCCTTCCAAATAATTCTTTTGTGGGCGATCTGTCTTGGG
ACGAGGAGGAGGAGGAATGCGGCATAGGTGTCATGGGCATGGGTTGTAGT
ACCAACAGGAGCAGCAAGACACCCTTGAATTCTTCCGCCACTGCTGGAAC
TGATGCTTCATTGACTTCTGCAACCACCTCCAAGACCAACGTTGTGTTGA
GTGAGGCGGCACGGGCTGCCATCGCTGCAACCATGCAAGAATTGGGAGAG
GTAGTGCGGCCAGGAGGTGAAGAGGTCGGGGAGGCAATCGAGGGGGGGGA
GCGGCGAAAACACCGGCATCAAGACAAAAGCAAGTCAGAAGGCTCGTCAT
CGTCACATCGTAAGCACAAAAAGAAAAGCAGTGGCGGCCGGCTGGCAGAT
AAGTTGTAGATGCAAAACTGCTTCGGGCTGACGATCCTCCACGCTTACAT
CAATCTCCCTTTTATCGTCATGAAAGAAGAGGGGCTCCGTCGACAGATGG
AACAGACGAGACGGGAGCTGGGCGAGGCGACGCGAGAGGTGGAAGATGCC
ATGACGCGTGAATCCTGGGGGGCATATATAGCCACTTTTGGGAAGAAGGA
AAAGGAGGGCGGAGCGCCAATAAAGGCGCCGATGCTCATCACACGCTCCA
TTGGCGGTGGTGGCGTGGAAGAGCACAAGACTTCCCCTTTCTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTC
CTCCTCCTTTTCAGCCATCACCACCACCGACAACAATACCACGTCCTTTC
CCAGGACAGCCAAGCATCAAAATATACTTCGAGGAGGTCCCGCATCGACG
TCTGCACGGCCACAGCAGCGGCAGCAGCAGCAGCCGCCAATACCACTGGC
GGACGTGGACGACTTCAAATTTCAACCTAACGAGCAGAGTGAGCTTGACC
TCTTTCTAGCCGACGGGGAGGGAACCGAGGAAGAGGGTGCACTAGACGAG
GAGCAAAAAGAGGCGGAGGGACGACGGTTGAGCTTGACGTCTTGCTTGAA
GCCGGGTTCGCTTGGGTCGCTCAGCAAAGCGGAGCGCCGCGCAGCTGGCA
TAGCGGTGGGCAATGGTGCAGGATATGGGAGCGACGGTGAGGACGAGGAG
GAGGAAGTCGAAGGGCAGGATGCGGTCGTGGCTGAAATCGGGGAACAACG
CTATGTAGGCCTAAGGCCTGTGACACTCTCATCCCAATCTTTGTCTCCTT
CGACCAGCGTCCCAGAGCAAGTCAATATGTTGTCCAGTGCTACAGGGAGA
AGGGGGAAGAAGGACGAGGAGAATGCAGAGAAGGAGCCTAAAGAAGACGA
TGAGTTTGATGTGCCGGCAGGCCTTCCAAATAATTCTTTTGTGGGCGATC
TGTCTTGGGACGAGGAGGAGGAGGAATGCGGCATAGGTGTCATGGGCATG
GGTTGTAGTACCAACAGGAGCAGCAAGACACCCTTGAATTCTTCCGCCAC
TGCTGGAACTGATGCTTCATTGACTTCTGCAACCACCTCCAAGACCAACG
TTGTGTTGAGTGAGGCGGCACGGGCTGCCATCGCTGCAACCATGCAAGAA
TTGGGAGAGGTAGTGCGGCCAGGAGGTGAAGAGGTCGGGGAGGCAATCGA
GGGGGGGGAGCGGCGAAAACACCGGCATCAAGACAAAAGCAAGTCAGAAG
GCTCGTCATCGTCACATCGTAAGCACAAAAAGAAAAGCAGTGGCGGCCGG
CTGGCAGATAAGTTGTAG

Synonyms

Publications