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Properties
| Property Name | Value |
|---|
| TranscriptId | 577902 |
| Track | FilteredModels2 |
| ProteinId | 577816 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:1417781..1420093 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_577 ID=mRNA_577|Name=jgi.p|Nanoce1779_2|577816|organism=Nannochloropsis oceanica|type=mRNA|length=1792bp
GGCGGGTTTCCCAAGAAGCGAGAGCTCGGTCTGTGTCTTTCTCGTCAGGA
GAGTTCACGCATTTTTCAACCAAAAAGGATGTCACACCACTGTTGCATTC
ATTACAGCATTTGGTTGTTAGTATACCAAGCTTAAAGAGCGAATGGGTAG
TTTGTTTGGGTTGTCCAAGGTAATAGGACGTCCACCACGACTCTCTCCCG
CGTTAATCAGTGCCTTCTCCATCCATTTCATAGACATTTGCCACCACAAG
AAGGACGAGCAAAAAAAAAACACCGTGCAATCGTACTCACCATAAACACA
CTACCACATAATAATTGCCCAGCCGCTAGCACGACACGCATCGAGAGGGG
GCAACGGGTTCGCGAGTGCAGGCAATTCGGGTGGTGGAAAAGCACCAGGA
GCACTTGGATCGATCCATCATCGTCATCACACCACAACTCAGCCGCAACC
ACACTATTATGTCGTCCTCATCCTCCACCACCAGCACTACGCCCAACGCT
ACTAGCAGTATAAGCCCGTCCATCACCCAGGAAGGCAGCGCGGGCTTCTT
CCCGCCTGACGTTGTGCATGCCGCCAAAGATGTTTTATCATCCATCGTGG
GCTCGGCCATGTGCGTCTACACAGGGCAGCCATTTGACACCGTTAAAGTG
CGCATGCAAGCCCGACCTGACGCATTTATGTCCCCTATCCAGTGCTTCAT
GACCACCTTCAGAGAAGAAGGGCTACGGGCCTTGTGGAAAGGGAGCGTGC
CGGCCCTTGTTGGGGCTGTGAGTGAGAACGCGGTTGCTTTCAGTGTGAAT
CAACAACTCAAGCGCATCATTGCCGATATGGAGGGCTACGGCTTGAGCAC
TGGGGGAGGTGGAGCTGAGGCAGAGACAGAGAAGGAGGGAGGAGGGGTGG
AAGAGAGTTTAATCGTACCATTTTTGACCGGGGGGTTTACCGGGATCTTC
ACCTCAGCAGCCTTATGTCCGAGTGACGTGATAAAGTGCAAAGTCCAGGT
GTCGCGGGCTATGCTAAAGACGGGGGAGACTGCCATGGATGCCAAGGAGA
TGCTGGTGCATGTCCTAAAGCAGCAAGGGATCAAAGGCTTGTTCGTTGGG
TTGGGGGCTCAGTTTGCGCGAGATATCCCGTTCTACGCCTTCTTCTTCGG
TACCTACGAGCTCAGCCTTCGAACCCTCAAGATCTACACCTCCGTCCCGC
AGGAGGCAGCCTATCTGATTGCAGGCGGGCTAGCGGGCGTGGCGGGCTGG
GCGGCTGTAATGCCCATCGACATGGCCAAGAGCATTATTCAAACCTCATC
TAACCCCAAGAGACTCATTCCCACCATGCTGGACGTATCGCGGGCACGAG
GGCCACTAGCTTTGTACTCAGGTTTGGGTGTGGCCATCTTTCGTGCCTTC
CCCGCCAACGCCGCATTGTTTCTAGGATACGAATTGGCAAGAGAATTGTT
GGATTAAGCAAAACGAGGAGCAACGGGGGCTCACTGTTTGCGAAAGGCAA
TGGAAAGGGCAAGGGTTGGACGCTTGCCTTGTTAGGTCTGCATGAGAGTG
GGATAGAGAGAGGGCAAGAAGGAAAATAGAGGAAGAGGAGGGAGGGGAGA
ATTATTTTTCTACATGTGGTGGGATGTGTGTATATCTAACTGCTGATATC
TTATGATGCATACAACGACTGAAGCGGCAGGATGGACGAGAAGGCCAGAA
CTGTGGCAAAAGCCAATGCAAATATGAGAATGTGAACGTGTATGCGAGTG
TGGCATCCAATTGTGATAGTGGAATAACAGTCTAGGCATGGC back to topprotein sequence of jgi.p|Nanoce1779_2|577816 >mRNA_577-protein ID=mRNA_577-protein|Name=jgi.p|Nanoce1779_2|577816|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MSSSSSTTSTTPNATSSISPSITQEGSAGFFPPDVVHAAKDVLSSIVGSA
MCVYTGQPFDTVKVRMQARPDAFMSPIQCFMTTFREEGLRALWKGSVPAL
VGAVSENAVAFSVNQQLKRIIADMEGYGLSTGGGGAEAETEKEGGGVEES
LIVPFLTGGFTGIFTSAALCPSDVIKCKVQVSRAMLKTGETAMDAKEMLV
HVLKQQGIKGLFVGLGAQFARDIPFYAFFFGTYELSLRTLKIYTSVPQEA
AYLIAGGLAGVAGWAAVMPIDMAKSIIQTSSNPKRLIPTMLDVSRARGPL
ALYSGLGVAIFRAFPANAALFLGYELARELLD* back to topmRNA from alignment at scaffold_3:1417781..1420093- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_577 ID=mRNA_577|Name=jgi.p|Nanoce1779_2|577816|organism=Nannochloropsis oceanica|type=mRNA|length=2313bp|location=Sequence derived from alignment at scaffold_3:1417781..1420093- (Nannochloropsis oceanica)
GGCGGGTTTCCCAAGAAGCGAGAGCTCGGTCTGTGTCTTTCTCGTCAGGA
GAGTTCACGCATTTTTCAACCAAAAAGGATGTCACACCACTGTTGCATTC
ATTACAGCATTTGGTTGTTAGTATACCAAGCTTAAAGAGCGAATGGGTAG
TTTGTTTGGGTTGTCCAAGGTAATAGGACGTCCACCACGACTCTCTCCCG
CGTTAATCAGTGCCTTCTCCATCCATTTCATAGACATTTGCCACCACAAG
AAGGACGAGCAAAAAAAAAACACCGTGCAATCGTACTCACCATAAACACA
CTACCACATAATAATTGCCCAGCCGCTAGCACGACACGCATCGAGAGGGG
GCAACGGGTTCGCGAGTGCAGGCAATTCGGGTGGTGGAAAAGCACCAGGA
GCACTTGGATCGATCCATCATCGTCATCACACCACAACTCAGCCGCAACC
ACACTATTATGTCGTCCTCATCCTCCACCACCAGCACTACGCCCAACGCT
ACTAGCAGTATAAGCCCGTCCATCACCCAGGAAGGCAGCGCGGGCTTCTT
CCCGCCTGACGTTGTGCATGCCGCCAAAGATGTTTTATCATCCATCGTGG
GCTCGGCCATGTGCGTCTACACAGGGCAGCCATTTGACACCGGTAAGTGG
AGAGATGGCAGGAAGGGGATAAGACGGGGAAGGAGGATTGCGGGCGGCAT
TAATGACGCTTGTGACAATGAAGATTGTACCTCCCTTGCTCACTCTTCCT
CTCCCCTCCTCCCATCCTGCTCTCCCCCCCCATCCACAGTTAAAGTGCGC
ATGCAAGCCCGACCTGACGCATTTATGTCCCCTATCCAGTGCTTCATGAC
CACCTTCAGAGAAGAAGGGCTACGGGCCTTGTGGAAAGGGAGCGTGCCGG
CCCTTGTTGGGGCTGTGAGTGAGAACGCGGTTGCTTTCAGTGTGAATCAA
CAACTCAAGCGCATCATTGCCGATATGGAGGGCTACGGCTTGAGCACTGG
GGGAGGTGGAGCTGAGGCAGAGACAGAGAAGGAGGGAGGAGGGGTGGAAG
AGAGTTTAATCGTACCATTTTTGACCGGGGGGTTTACCGGGATCTTCACC
TCAGCAGCCTTATGTCCGAGTGACGTGATAAAGTGCAAAGTCCAGGTGTC
GCGGGCTATGCTAAAGACGGGGGAGACTGCCATGGATGCCAAGGAGATGC
TGGTGCATGTCCTAAAGCAGCAAGGGATCAAAGGCTTGTTCGTTGGGTTG
GGGGCTCAGTTTGCGCGAGATATCCCGTTCTACGCCTTCTTCTTCGGTAC
CTACGAGCTCAGCCTTCGAACCCTCAAGATCTACACCTCCGTCCCGCAGG
AGGCAGCCTATCTGATTGCAGGTGCGTGTTAATTGTCATCTTCTTCCCTC
TCTCCTTCTTCTTCTCCCCCCTTTCTACCCCTTGTGAAATCGATCGCATC
TTTTGGGGGCCTCGACTCAGCCCTCATTCCTTCCCCCTCTCCTCCCTCCC
TCCTTCCCTCCCTCCTTCCCTCCCTCCCCAGGCGGGCTAGCGGGCGTGGC
GGGCTGGGCGGCTGTAATGCCCATCGACATGGCCAAGAGCATTATTCAAA
CCTCATCTAACCCCAAGAGACTCATTCCCACCATGCTGGACGTATCGCGG
GCACGAGGGCCACTAGCTTTGTACTCAGGTAAGCGAGGAAGGAGTGAGGG
AAGGAGGAATAGAAGGTTCATGCTCTAAAATAAACAGGAGGCTGGTCGTG
GAAGGACTGCAAAGGTGGTGTTTCATGCGGCTGTTGTTGGATCAACCTGT
ACGGTATTATCCCTTGCTTTCCCCCTTACCTTGCTCATCTCGTCTTCCCT
CCCTTCCTCTTCCTCCCCCCCTCCTTACTCTATTTCTTCAAGGTTTGGGT
GTGGCCATCTTTCGTGCCTTCCCCGCCAACGCCGCATTGTTTCTAGGATA
CGAATTGGCAAGAGAATTGTTGGATTAAGCAAAACGAGGAGCAACGGGGG
CTCACTGTTTGCGAAAGGCAATGGAAAGGGCAAGGGTTGGACGCTTGCCT
TGTTAGGTCTGCATGAGAGTGGGATAGAGAGAGGGCAAGAAGGAAAATAG
AGGAAGAGGAGGGAGGGGAGAATTATTTTTCTACATGTGGTGGGATGTGT
GTATATCTAACTGCTGATATCTTATGATGCATACAACGACTGAAGCGGCA
GGATGGACGAGAAGGCCAGAACTGTGGCAAAAGCCAATGCAAATATGAGA
ATGTGAACGTGTATGCGAGTGTGGCATCCAATTGTGATAGTGGAATAACA
GTCTAGGCATGGC back to topCoding sequence (CDS) from alignment at scaffold_3:1417781..1420093- >mRNA_577 ID=mRNA_577|Name=jgi.p|Nanoce1779_2|577816|organism=Nannochloropsis oceanica|type=CDS|length=3996bp|location=Sequence derived from alignment at scaffold_3:1417781..1420093- (Nannochloropsis oceanica)
GTTTGGGTGTGGCCATCTTTCGTGCCTTCCCCGCCAACGCCGCATTGTTT
CTAGGATACGAATTGGCAAGAGAATTGTTGGATTAAGCGGGCTAGCGGGC
GTGGCGGGCTGGGCGGCTGTAATGCCCATCGACATGGCCAAGAGCATTAT
TCAAACCTCATCTAACCCCAAGAGACTCATTCCCACCATGCTGGACGTAT
CGCGGGCACGAGGGCCACTAGCTTTGTACTCAGTTAAAGTGCGCATGCAA
GCCCGACCTGACGCATTTATGTCCCCTATCCAGTGCTTCATGACCACCTT
CAGAGAAGAAGGGCTACGGGCCTTGTGGAAAGGGAGCGTGCCGGCCCTTG
TTGGGGCTGTGAGTGAGAACGCGGTTGCTTTCAGTGTGAATCAACAACTC
AAGCGCATCATTGCCGATATGGAGGGCTACGGCTTGAGCACTGGGGGAGG
TGGAGCTGAGGCAGAGACAGAGAAGGAGGGAGGAGGGGTGGAAGAGAGTT
TAATCGTACCATTTTTGACCGGGGGGTTTACCGGGATCTTCACCTCAGCA
GCCTTATGTCCGAGTGACGTGATAAAGTGCAAAGTCCAGGTGTCGCGGGC
TATGCTAAAGACGGGGGAGACTGCCATGGATGCCAAGGAGATGCTGGTGC
ATGTCCTAAAGCAGCAAGGGATCAAAGGCTTGTTCGTTGGGTTGGGGGCT
CAGTTTGCGCGAGATATCCCGTTCTACGCCTTCTTCTTCGGTACCTACGA
GCTCAGCCTTCGAACCCTCAAGATCTACACCTCCGTCCCGCAGGAGGCAG
CCTATCTGATTGCAGATGTCGTCCTCATCCTCCACCACCAGCACTACGCC
CAACGCTACTAGCAGTATAAGCCCGTCCATCACCCAGGAAGGCAGCGCGG
GCTTCTTCCCGCCTGACGTTGTGCATGCCGCCAAAGATGTTTTATCATCC
ATCGTGGGCTCGGCCATGTGCGTCTACACAGGGCAGCCATTTGACACCGG
TTTGGGTGTGGCCATCTTTCGTGCCTTCCCCGCCAACGCCGCATTGTTTC
TAGGATACGAATTGGCAAGAGAATTGTTGGATTAAGCGGGCTAGCGGGCG
TGGCGGGCTGGGCGGCTGTAATGCCCATCGACATGGCCAAGAGCATTATT
CAAACCTCATCTAACCCCAAGAGACTCATTCCCACCATGCTGGACGTATC
GCGGGCACGAGGGCCACTAGCTTTGTACTCAGTTAAAGTGCGCATGCAAG
CCCGACCTGACGCATTTATGTCCCCTATCCAGTGCTTCATGACCACCTTC
AGAGAAGAAGGGCTACGGGCCTTGTGGAAAGGGAGCGTGCCGGCCCTTGT
TGGGGCTGTGAGTGAGAACGCGGTTGCTTTCAGTGTGAATCAACAACTCA
AGCGCATCATTGCCGATATGGAGGGCTACGGCTTGAGCACTGGGGGAGGT
GGAGCTGAGGCAGAGACAGAGAAGGAGGGAGGAGGGGTGGAAGAGAGTTT
AATCGTACCATTTTTGACCGGGGGGTTTACCGGGATCTTCACCTCAGCAG
CCTTATGTCCGAGTGACGTGATAAAGTGCAAAGTCCAGGTGTCGCGGGCT
ATGCTAAAGACGGGGGAGACTGCCATGGATGCCAAGGAGATGCTGGTGCA
TGTCCTAAAGCAGCAAGGGATCAAAGGCTTGTTCGTTGGGTTGGGGGCTC
AGTTTGCGCGAGATATCCCGTTCTACGCCTTCTTCTTCGGTACCTACGAG
CTCAGCCTTCGAACCCTCAAGATCTACACCTCCGTCCCGCAGGAGGCAGC
CTATCTGATTGCAGATGTCGTCCTCATCCTCCACCACCAGCACTACGCCC
AACGCTACTAGCAGTATAAGCCCGTCCATCACCCAGGAAGGCAGCGCGGG
CTTCTTCCCGCCTGACGTTGTGCATGCCGCCAAAGATGTTTTATCATCCA
TCGTGGGCTCGGCCATGTGCGTCTACACAGGGCAGCCATTTGACACCGGT
TTGGGTGTGGCCATCTTTCGTGCCTTCCCCGCCAACGCCGCATTGTTTCT
AGGATACGAATTGGCAAGAGAATTGTTGGATTAAGCGGGCTAGCGGGCGT
GGCGGGCTGGGCGGCTGTAATGCCCATCGACATGGCCAAGAGCATTATTC
AAACCTCATCTAACCCCAAGAGACTCATTCCCACCATGCTGGACGTATCG
CGGGCACGAGGGCCACTAGCTTTGTACTCAGTTAAAGTGCGCATGCAAGC
CCGACCTGACGCATTTATGTCCCCTATCCAGTGCTTCATGACCACCTTCA
GAGAAGAAGGGCTACGGGCCTTGTGGAAAGGGAGCGTGCCGGCCCTTGTT
GGGGCTGTGAGTGAGAACGCGGTTGCTTTCAGTGTGAATCAACAACTCAA
GCGCATCATTGCCGATATGGAGGGCTACGGCTTGAGCACTGGGGGAGGTG
GAGCTGAGGCAGAGACAGAGAAGGAGGGAGGAGGGGTGGAAGAGAGTTTA
ATCGTACCATTTTTGACCGGGGGGTTTACCGGGATCTTCACCTCAGCAGC
CTTATGTCCGAGTGACGTGATAAAGTGCAAAGTCCAGGTGTCGCGGGCTA
TGCTAAAGACGGGGGAGACTGCCATGGATGCCAAGGAGATGCTGGTGCAT
GTCCTAAAGCAGCAAGGGATCAAAGGCTTGTTCGTTGGGTTGGGGGCTCA
GTTTGCGCGAGATATCCCGTTCTACGCCTTCTTCTTCGGTACCTACGAGC
TCAGCCTTCGAACCCTCAAGATCTACACCTCCGTCCCGCAGGAGGCAGCC
TATCTGATTGCAGATGTCGTCCTCATCCTCCACCACCAGCACTACGCCCA
ACGCTACTAGCAGTATAAGCCCGTCCATCACCCAGGAAGGCAGCGCGGGC
TTCTTCCCGCCTGACGTTGTGCATGCCGCCAAAGATGTTTTATCATCCAT
CGTGGGCTCGGCCATGTGCGTCTACACAGGGCAGCCATTTGACACCGGTT
TGGGTGTGGCCATCTTTCGTGCCTTCCCCGCCAACGCCGCATTGTTTCTA
GGATACGAATTGGCAAGAGAATTGTTGGATTAAGCGGGCTAGCGGGCGTG
GCGGGCTGGGCGGCTGTAATGCCCATCGACATGGCCAAGAGCATTATTCA
AACCTCATCTAACCCCAAGAGACTCATTCCCACCATGCTGGACGTATCGC
GGGCACGAGGGCCACTAGCTTTGTACTCAGTTAAAGTGCGCATGCAAGCC
CGACCTGACGCATTTATGTCCCCTATCCAGTGCTTCATGACCACCTTCAG
AGAAGAAGGGCTACGGGCCTTGTGGAAAGGGAGCGTGCCGGCCCTTGTTG
GGGCTGTGAGTGAGAACGCGGTTGCTTTCAGTGTGAATCAACAACTCAAG
CGCATCATTGCCGATATGGAGGGCTACGGCTTGAGCACTGGGGGAGGTGG
AGCTGAGGCAGAGACAGAGAAGGAGGGAGGAGGGGTGGAAGAGAGTTTAA
TCGTACCATTTTTGACCGGGGGGTTTACCGGGATCTTCACCTCAGCAGCC
TTATGTCCGAGTGACGTGATAAAGTGCAAAGTCCAGGTGTCGCGGGCTAT
GCTAAAGACGGGGGAGACTGCCATGGATGCCAAGGAGATGCTGGTGCATG
TCCTAAAGCAGCAAGGGATCAAAGGCTTGTTCGTTGGGTTGGGGGCTCAG
TTTGCGCGAGATATCCCGTTCTACGCCTTCTTCTTCGGTACCTACGAGCT
CAGCCTTCGAACCCTCAAGATCTACACCTCCGTCCCGCAGGAGGCAGCCT
ATCTGATTGCAGATGTCGTCCTCATCCTCCACCACCAGCACTACGCCCAA
CGCTACTAGCAGTATAAGCCCGTCCATCACCCAGGAAGGCAGCGCGGGCT
TCTTCCCGCCTGACGTTGTGCATGCCGCCAAAGATGTTTTATCATCCATC
GTGGGCTCGGCCATGTGCGTCTACACAGGGCAGCCATTTGACACCG back to top
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