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Properties
| Property Name | Value |
|---|
| TranscriptId | 590339 |
| Track | FilteredModels2 |
| ProteinId | 590253 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:534835..537590 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5769 ID=mRNA_5769|Name=jgi.p|Nanoce1779_2|590253|organism=Nannochloropsis oceanica|type=mRNA|length=2049bp
ACAGGTCGTCCGTCCAAGCACCCCTGATCCGTGTGGCCTTCGCGGGTACC
CAGCAGAAATATGAGCACCGGTGAGGTGCGTCCACCATCGGCAACCGCTT
TAAAGGGCGATTTCTCCTTTCGCACGACGAGTAATTTCAGCCGTCAGAGC
TCGAGAAACGTCGGCAGCAACAGTTCTCGGCCAGCGCCAATGCTGGGAAA
CTTGCGTCGCAGCCAATTTAATGTTTGTAATCGGCGCCTGGTGTCCAAGC
GTCCCATCCAAGAACGAGAAGACTTTCACATCATGCTTTTTGCTTCTTTC
TGCTTAATGATTAACAGCGGAATGATCAATGTCATTTGCTTGAGCTCCTA
TTTGAGTATACCGACAGCACATGTCACGGGATTGATTGCACGGTCCTCTT
CAGCAATCGCGGACGGAGATTGGGATTATCTATTCCTTCCCGGAACTGTA
TTTTCCTGCTTTTTGCTAGGCTCCATAGTGGGCGGCCTGAGTATTTCACA
CGCCAGCTTTTACCTCGGGCGTTCCTACGGGCGCGCCTTACTTATCGTCG
CCTCCCTGTTCGTTTCTGCTCTGGCTGTCAACCATGTCCACGGTGTACAG
CACTACTACATTTATGTTTGCGCAGTTGCGATGGGCCTGCAAAATTCACT
TACCAGTAAATACAGCGGGAACACGTTGCGGACCACGCATGCTACGGGGG
CCACCACTGACCTGGGCATCGCCATCGGTCACTTTATCAAAGGTCGGAGA
GAGGACACCTGGAAAATGTACGTGAGCGCTAAGGCCTAAAGTACGTGTTG
TTGGATTCTCCTCGTTATTTACTCCCGCCATCCTTTCCTCCTTCCCTCTC
TCCCTCATCTCTCTCAGTAAGTTACACGGCACGGCTATTTTGGGCTTCTT
GATTGGGGGTATCGTGGGGAGGTTTGCTTACATACGCTATCAGGAGCTGG
CGCTTGTGTTCAATGTGGTCATATTAACTGTGTTAGGTTGTGCTCACTTA
CTCTGGTTGTCCCGTCGGGAGCAACTCTCGCTTTGGAAGCTCATCAAGAG
GCGGACCGACGTAAAAGTTCACCATTCCTACTCCGACCCCCAATACACCA
CGCCACCGCCGTCTTCTACTGCTGCTGCCACTGCCCTTGTACATGCCGAC
AGCGGCTCAATAATACGCCCTCCCCATCCCCTTCCCCTTTCCAGTCTGGC
TTCTGGGGTTTCCTCCTCCGGATCCTTTCGAACCGTGAGTGTCATGGCGT
TGCAGCGAGTCGACAGCGGTGGCGGCAGCAGGCGAAGCCTGCCACTGGGC
CACCAGAACTCCTCCTCATCTACGCGCAAGGGCATGGGTAGTACAAGTAA
ATTGCGCCCGCCTGGGAGTGCGCCTATCTCTACCCACTCATCACTTTCGG
TGGCGTCGTCCTCCTTATCTGAAATCGGCCGGCTACCGTCCCTGCGCAAT
ACAGCTACTCCAGATACTACCCACAGCCACGGTAGCAGTAGTAGTAGTAG
TAATAGTAATAGTAGTAGTAGTAGTAGTAATATTAGTAGTAATGGTAATG
GTGGTGGTAGTAGTAGTAGTAGTAGTAGCAGTAGTAGCAGTAATTGCAGC
AGCAGCGGCAGCAGCGACAGTAGCAGTCCTCCCTTTCACCCCAACAACGC
ACAGACTAAGCAGATTTCTCACCCTGTCCCACCTCCACCGACTGCAAGCG
GAGAGCCCACCAGCTCTATCAACCTACTCGATGGTATGTATGCTGGTGCC
TCTTCTCAGATGATATCTTTCCGTGGCTTGCCCTCGGTGAATGAGGAAAT
TTCGCAGCGATTGGTGATGGTGGAGGTAGAGGTGGTTGAGGAGGATGAGG
ATGCCTTGCTCGCTTGTGGGGGGGACGTGGACGAGTACAGTGTTGGTGAT
GTAGCTGGAGAGGCAAGTGGGGACGAGTTTGATTATTTGAGGGACATGGC
CTATGGAAATTTGGTGGAGGTCGTCGTGGAAGAAGGGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGGGCGATCGGCTGCGGTGCAACGGCGGGAGTGAGG back to topprotein sequence of jgi.p|Nanoce1779_2|590253 >mRNA_5769-protein ID=mRNA_5769-protein|Name=jgi.p|Nanoce1779_2|590253|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp
MSTGEVRPPSATALKGDFSFRTTSNFSRQSSRNVGSNSSRPAPMLGNLRR
SQFNVCNRRLVSKRPIQEREDFHIMLFASFCLMINSGMINVICLSSYLSI
PTAHVTGLIARSSSAIADGDWDYLFLPGTVFSCFLLGSIVGGLSISHASF
YLGRSYGRALLIVASLFVSALAVNHVHGVQHYYIYVCAVAMGLQNSLTSK
YSGNTLRTTHATGATTDLGIAIGHFIKGRREDTWKMYVSAKA* back to topmRNA from alignment at scaffold_11:534835..537590- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5769 ID=mRNA_5769|Name=jgi.p|Nanoce1779_2|590253|organism=Nannochloropsis oceanica|type=mRNA|length=2756bp|location=Sequence derived from alignment at scaffold_11:534835..537590- (Nannochloropsis oceanica)
ACAGGTCGTCCGTCCAAGCACCCCTGATCCGTGTGGCCTTCGCGGGTACC
CAGCAGAAATATGAGCACCGGTGAGGTGCGTCCACCATCGGCAACCGCTT
TAAAGGGCGATTTCTCCTTTCGCACGACGAGTAATTTCAGCCGTCAGGTA
AGAAGACGGGCATTTGAGACAAAGAAGGGGTAGAGGAGCGGGAGGAGCTT
GTCGTGCATGGGGTGCCGAAAACCCAAAGTGGAGGAGGTGATAGGCACAT
AGAAATGATGCAATGCAGGCCAAGTGCATGTTCCGAAAACGACTCAATAA
TACATCGACAACGGTCTTCTCCGAGTCTATTTGCGTGGCGGTGACAGGCA
ACATAGAGACAGCGCTAGCGCAGTCATCATGAGTATGGCCGATGAAATCT
ATAAAGCCCAACGCATTTCCTTAATCATTCCATCCTTCACAATACATACA
GAGCTCGAGAAACGTCGGCAGCAACAGTTCTCGGCCAGCGCCAATGCTGG
GAAACTTGCGTCGCAGCCAATTTAATGTTTGTAATCGGCGCCTGGTGTCC
AAGCGTCCCATCCAAGAACGAGAAGACTTTCACATCATGCTTTTTGCTTC
TTTCTGCTTAATGTACGTCGAAAGACTGGTGGTGTCTCCACATCCACTTT
GCTTTCATCCTTTAAGATATCTTTCTTTCATGTGTTTCTAACGTCAGATG
GGGAATATACATTTAAGACGAAGGGACGTAATTATGCACTTTTTGGATCA
AAGAACTCATAACCTCATAATACGCGCATGATGATAGGATTAACAGCGGA
ATGATCAATGTCATTTGCTTGAGCTCCTATTTGAGTATACCGACAGCACA
TGTCACGGGATTGATTGCACGGTCCTCTTCAGCAATCGCGGACGGAGATT
GGGATTATCTATTCCTTCCCGGAACTGTATTTTCCTGCTTTTTGCTAGGC
TCCATAGTGGGCGGCCTGAGTATTTCACACGCCAGCTTTTACCTCGGTAA
GTGCCTACGGAAAACGATTGATGGGTGAGTCGGGTGGTGATTAGGGATCG
ATAGATTAACTAAATGACTGATTATGGCATTTGATCAGCATCCTTTCCAC
CTGAGGGTAGATTAGAAGCTCGCGTGCGTAACATTGCTCCACCGTTTTTC
AACTGAAGACTTATCTCTCTCCGCTTCCATTGCTCTCTTCCTTTATCCCC
CTCTCTCTCTTCCCCCCCGAACAGGGCGTTCCTACGGGCGCGCCTTACTT
ATCGTCGCCTCCCTGTTCGTTTCTGCTCTGGCTGTCAACCATGTCCACGG
TGTACAGCACTACTACATTTATGTTTGCGCAGTTGCGATGGGCCTGCAAA
ATTCACTTACCAGTAAATACAGCGGGAACACGTTGCGGACCACGCATGCT
ACGGGGGCCACCACTGACCTGGGCATCGCCATCGGTCACTTTATCAAAGG
TCGGAGAGAGGACACCTGGAAAATGTACGTGAGCGCTAAGGCCTAAAGTA
CGTGTTGTTGGATTCTCCTCGTTATTTACTCCCGCCATCCTTTCCTCCTT
CCCTCTCTCCCTCATCTCTCTCAGTAAGTTACACGGCACGGCTATTTTGG
GCTTCTTGATTGGGGGTATCGTGGGGAGGTTTGCTTACATACGCTATCAG
GAGCTGGCGCTTGTGTTCAATGTGGTCATATTAACTGTGTTAGGTTGTGC
TCACTTACTCTGGTTGTCCCGTCGGGAGCAACTCTCGCTTTGGAAGCTCA
TCAAGAGGCGGACCGACGTAAAAGTTCACCATTCCTACTCCGACCCCCAA
TACACCACGCCACCGCCGTCTTCTACTGCTGCTGCCACTGCCCTTGTACA
TGCCGACAGCGGCTCAATAATACGCCCTCCCCATCCCCTTCCCCTTTCCA
GTCTGGCTTCTGGGGTTTCCTCCTCCGGATCCTTTCGAACCGTGAGTGTC
ATGGCGTTGCAGCGAGTCGACAGCGGTGGCGGCAGCAGGCGAAGCCTGCC
ACTGGGCCACCAGAACTCCTCCTCATCTACGCGCAAGGGCATGGGTAGTA
CAAGTAAATTGCGCCCGCCTGGGAGTGCGCCTATCTCTACCCACTCATCA
CTTTCGGTGGCGTCGTCCTCCTTATCTGAAATCGGCCGGCTACCGTCCCT
GCGCAATACAGCTACTCCAGATACTACCCACAGCCACGGTAGCAGTAGTA
GTAGTAGTAATAGTAATAGTAGTAGTAGTAGTAGTAATATTAGTAGTAAT
GGTAATGGTGGTGGTAGTAGTAGTAGTAGTAGTAGCAGTAGTAGCAGTAA
TTGCAGCAGCAGCGGCAGCAGCGACAGTAGCAGTCCTCCCTTTCACCCCA
ACAACGCACAGACTAAGCAGATTTCTCACCCTGTCCCACCTCCACCGACT
GCAAGCGGAGAGCCCACCAGCTCTATCAACCTACTCGATGGTATGTATGC
TGGTGCCTCTTCTCAGATGATATCTTTCCGTGGCTTGCCCTCGGTGAATG
AGGAAATTTCGCAGCGATTGGTGATGGTGGAGGTAGAGGTGGTTGAGGAG
GATGAGGATGCCTTGCTCGCTTGTGGGGGGGACGTGGACGAGTACAGTGT
TGGTGATGTAGCTGGAGAGGCAAGTGGGGACGAGTTTGATTATTTGAGGG
ACATGGCCTATGGAAATTTGGTGGAGGTCGTCGTGGAAGAAGGGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGGGCGATCGGCTGCGGTGCAACGGCGGGA
GTGAGG back to topCoding sequence (CDS) from alignment at scaffold_11:534835..537590- >mRNA_5769 ID=mRNA_5769|Name=jgi.p|Nanoce1779_2|590253|organism=Nannochloropsis oceanica|type=CDS|length=2916bp|location=Sequence derived from alignment at scaffold_11:534835..537590- (Nannochloropsis oceanica)
GGCGTTCCTACGGGCGCGCCTTACTTATCGTCGCCTCCCTGTTCGTTTCT
GCTCTGGCTGTCAACCATGTCCACGGTGTACAGCACTACTACATTTATGT
TTGCGCAGTTGCGATGGGCCTGCAAAATTCACTTACCAGTAAATACAGCG
GGAACACGTTGCGGACCACGCATGCTACGGGGGCCACCACTGACCTGGGC
ATCGCCATCGGTCACTTTATCAAAGGTCGGAGAGAGGACACCTGGAAAAT
GTACGTGAGCGCTAAGGCCTAAGATTAACAGCGGAATGATCAATGTCATT
TGCTTGAGCTCCTATTTGAGTATACCGACAGCACATGTCACGGGATTGAT
TGCACGGTCCTCTTCAGCAATCGCGGACGGAGATTGGGATTATCTATTCC
TTCCCGGAACTGTATTTTCCTGCTTTTTGCTAGGCTCCATAGTGGGCGGC
CTGAGTATTTCACACGCCAGCTTTTACCTCGAGCTCGAGAAACGTCGGCA
GCAACAGTTCTCGGCCAGCGCCAATGCTGGGAAACTTGCGTCGCAGCCAA
TTTAATGTTTGTAATCGGCGCCTGGTGTCCAAGCGTCCCATCCAAGAACG
AGAAGACTTTCACATCATGCTTTTTGCTTCTTTCTGCTTAATATGAGCAC
CGGTGAGGTGCGTCCACCATCGGCAACCGCTTTAAAGGGCGATTTCTCCT
TTCGCACGACGAGTAATTTCAGCCGTCAGGGCGTTCCTACGGGCGCGCCT
TACTTATCGTCGCCTCCCTGTTCGTTTCTGCTCTGGCTGTCAACCATGTC
CACGGTGTACAGCACTACTACATTTATGTTTGCGCAGTTGCGATGGGCCT
GCAAAATTCACTTACCAGTAAATACAGCGGGAACACGTTGCGGACCACGC
ATGCTACGGGGGCCACCACTGACCTGGGCATCGCCATCGGTCACTTTATC
AAAGGTCGGAGAGAGGACACCTGGAAAATGTACGTGAGCGCTAAGGCCTA
AGATTAACAGCGGAATGATCAATGTCATTTGCTTGAGCTCCTATTTGAGT
ATACCGACAGCACATGTCACGGGATTGATTGCACGGTCCTCTTCAGCAAT
CGCGGACGGAGATTGGGATTATCTATTCCTTCCCGGAACTGTATTTTCCT
GCTTTTTGCTAGGCTCCATAGTGGGCGGCCTGAGTATTTCACACGCCAGC
TTTTACCTCGAGCTCGAGAAACGTCGGCAGCAACAGTTCTCGGCCAGCGC
CAATGCTGGGAAACTTGCGTCGCAGCCAATTTAATGTTTGTAATCGGCGC
CTGGTGTCCAAGCGTCCCATCCAAGAACGAGAAGACTTTCACATCATGCT
TTTTGCTTCTTTCTGCTTAATATGAGCACCGGTGAGGTGCGTCCACCATC
GGCAACCGCTTTAAAGGGCGATTTCTCCTTTCGCACGACGAGTAATTTCA
GCCGTCAGGGCGTTCCTACGGGCGCGCCTTACTTATCGTCGCCTCCCTGT
TCGTTTCTGCTCTGGCTGTCAACCATGTCCACGGTGTACAGCACTACTAC
ATTTATGTTTGCGCAGTTGCGATGGGCCTGCAAAATTCACTTACCAGTAA
ATACAGCGGGAACACGTTGCGGACCACGCATGCTACGGGGGCCACCACTG
ACCTGGGCATCGCCATCGGTCACTTTATCAAAGGTCGGAGAGAGGACACC
TGGAAAATGTACGTGAGCGCTAAGGCCTAAGATTAACAGCGGAATGATCA
ATGTCATTTGCTTGAGCTCCTATTTGAGTATACCGACAGCACATGTCACG
GGATTGATTGCACGGTCCTCTTCAGCAATCGCGGACGGAGATTGGGATTA
TCTATTCCTTCCCGGAACTGTATTTTCCTGCTTTTTGCTAGGCTCCATAG
TGGGCGGCCTGAGTATTTCACACGCCAGCTTTTACCTCGAGCTCGAGAAA
CGTCGGCAGCAACAGTTCTCGGCCAGCGCCAATGCTGGGAAACTTGCGTC
GCAGCCAATTTAATGTTTGTAATCGGCGCCTGGTGTCCAAGCGTCCCATC
CAAGAACGAGAAGACTTTCACATCATGCTTTTTGCTTCTTTCTGCTTAAT
ATGAGCACCGGTGAGGTGCGTCCACCATCGGCAACCGCTTTAAAGGGCGA
TTTCTCCTTTCGCACGACGAGTAATTTCAGCCGTCAGGGCGTTCCTACGG
GCGCGCCTTACTTATCGTCGCCTCCCTGTTCGTTTCTGCTCTGGCTGTCA
ACCATGTCCACGGTGTACAGCACTACTACATTTATGTTTGCGCAGTTGCG
ATGGGCCTGCAAAATTCACTTACCAGTAAATACAGCGGGAACACGTTGCG
GACCACGCATGCTACGGGGGCCACCACTGACCTGGGCATCGCCATCGGTC
ACTTTATCAAAGGTCGGAGAGAGGACACCTGGAAAATGTACGTGAGCGCT
AAGGCCTAAGATTAACAGCGGAATGATCAATGTCATTTGCTTGAGCTCCT
ATTTGAGTATACCGACAGCACATGTCACGGGATTGATTGCACGGTCCTCT
TCAGCAATCGCGGACGGAGATTGGGATTATCTATTCCTTCCCGGAACTGT
ATTTTCCTGCTTTTTGCTAGGCTCCATAGTGGGCGGCCTGAGTATTTCAC
ACGCCAGCTTTTACCTCGAGCTCGAGAAACGTCGGCAGCAACAGTTCTCG
GCCAGCGCCAATGCTGGGAAACTTGCGTCGCAGCCAATTTAATGTTTGTA
ATCGGCGCCTGGTGTCCAAGCGTCCCATCCAAGAACGAGAAGACTTTCAC
ATCATGCTTTTTGCTTCTTTCTGCTTAATATGAGCACCGGTGAGGTGCGT
CCACCATCGGCAACCGCTTTAAAGGGCGATTTCTCCTTTCGCACGACGAG
TAATTTCAGCCGTCAG back to top
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